RNA–Protein interactions for RNA: ENST00000594828.7

LSM4-204, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 807 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-204ENST00000594828 CUL7Q14999 1698 aa40.43■■■■■ 4.06
LSM4-204ENST00000594828 RUSC2Q8N2Y8 1516 aa40.38■■■■■ 4.06
LSM4-204ENST00000594828 CARMIL1Q5VZK9 1371 aa40.35■■■■■ 4.05
LSM4-204ENST00000594828 KIAA0586Q9BVV6 1533 aa40.3■■■■■ 4.04
LSM4-204ENST00000594828 RAPGEF2Q9Y4G8 1499 aa40■■■■□ 3.99
LSM4-204ENST00000594828 NPM1P06748 294 aaKnown RBP eCLIP39.96■■■■□ 3.99
LSM4-204ENST00000594828 IQGAP2Q13576 1575 aa39.93■■■■□ 3.98
LSM4-204ENST00000594828 CARMIL2Q6F5E8 1435 aa39.91■■■■□ 3.98
LSM4-204ENST00000594828 PTPRGP23470 1445 aa39.88■■■■□ 3.97
LSM4-204ENST00000594828 ADCY10Q96PN6 1610 aa39.85■■■■□ 3.97
LSM4-204ENST00000594828 TTBK1Q5TCY1 1321 aaPredicted RBP39.84■■■■□ 3.97
LSM4-204ENST00000594828 TNIKQ9UKE5 1360 aa39.83■■■■□ 3.97
LSM4-204ENST00000594828 MAPKBP1O60336 1514 aa39.73■■■■□ 3.95
LSM4-204ENST00000594828 DISP1Q96F81 1524 aa39.72■■■■□ 3.95
LSM4-204ENST00000594828 KIF13AQ9H1H9 1805 aa39.71■■■■□ 3.95
LSM4-204ENST00000594828 UGGT2Q9NYU1 1516 aa39.7■■■■□ 3.95
LSM4-204ENST00000594828 FAM69CQ0P6D2 419 aa39.69■■■■□ 3.94
LSM4-204ENST00000594828 ABCC10Q5T3U5 1492 aa39.68■■■■□ 3.94
LSM4-204ENST00000594828 PRXQ9BXM0 1461 aa39.68■■■■□ 3.94
LSM4-204ENST00000594828 CTTNBP2Q8WZ74 1663 aa39.57■■■■□ 3.93
LSM4-204ENST00000594828 UACAQ9BZF9 1416 aa39.57■■■■□ 3.92
LSM4-204ENST00000594828 ABCC2Q92887 1545 aa39.56■■■■□ 3.92
LSM4-204ENST00000594828 CSRNP3Q8WYN3 585 aa39.56■■■■□ 3.92
LSM4-204ENST00000594828 KIAA0556O60303 1618 aa39.55■■■■□ 3.92
LSM4-204ENST00000594828 DIP2BQ9P265 1576 aa39.55■■■■□ 3.92
LSM4-204ENST00000594828 UHRF1BP1LA0JNW5 1464 aa39.54■■■■□ 3.92
LSM4-204ENST00000594828 GOLGA3Q08378 1498 aa39.45■■■■□ 3.91
LSM4-204ENST00000594828 EEA1Q15075 1411 aa39.4■■■■□ 3.9
LSM4-204ENST00000594828 ASXL2Q76L83 1435 aa39.4■■■■□ 3.9
LSM4-204ENST00000594828 PLB1Q6P1J6 1458 aa39.38■■■■□ 3.9
LSM4-204ENST00000594828 KDM5BQ9UGL1 1544 aa39.35■■■■□ 3.89
LSM4-204ENST00000594828 FAM9AQ8IZU1 332 aaPredicted RBP39.3■■■■□ 3.88
LSM4-204ENST00000594828 TSPOAP1O95153 1857 aa39.26■■■■□ 3.87
LSM4-204ENST00000594828 ZCCHC11Q5TAX3 1644 aaKnown RBP39.24■■■■□ 3.87
LSM4-204ENST00000594828 GLI2P10070 1586 aa39.21■■■■□ 3.87
LSM4-204ENST00000594828 P3H3Q8IVL6 736 aa39.21■■■■□ 3.87
LSM4-204ENST00000594828 ABCA8O94911 1581 aa39.18■■■■□ 3.86
LSM4-204ENST00000594828 CHIC1Q5VXU3 224 aa39.18■■■■□ 3.86
LSM4-204ENST00000594828 EPRSP07814 1512 aaKnown RBP39.15■■■■□ 3.86
LSM4-204ENST00000594828 KDM6BO15054 1643 aa39.11■■■■□ 3.85
LSM4-204ENST00000594828 AEBP2Q6ZN18 517 aaPredicted RBP39.11■■■■□ 3.85
LSM4-204ENST00000594828 WDR7Q9Y4E6 1490 aa39.07■■■■□ 3.85
LSM4-204ENST00000594828 SAMD9Q5K651 1589 aa39.05■■■■□ 3.84
LSM4-204ENST00000594828 RANGAP1P46060 587 aaPredicted RBP39.04■■■■□ 3.84
LSM4-204ENST00000594828 PPRC1Q5VV67 1664 aaKnown RBP39.02■■■■□ 3.84
LSM4-204ENST00000594828 KIF21BO75037 1637 aa39.01■■■■□ 3.84
LSM4-204ENST00000594828 MAP3K4Q9Y6R4 1608 aa39■■■■□ 3.83
LSM4-204ENST00000594828 KCNH8Q96L42 1107 aa38.97■■■■□ 3.83
LSM4-204ENST00000594828 ARID3CA6NKF2 412 aa38.95■■■■□ 3.83
LSM4-204ENST00000594828 TEX14Q8IWB6 1497 aa38.91■■■■□ 3.82
LSM4-204ENST00000594828 ATP10BO94823 1461 aa38.9■■■■□ 3.82
LSM4-204ENST00000594828 EHMT2Q96KQ7 1210 aa38.86■■■■□ 3.81
LSM4-204ENST00000594828 FHOD3Q2V2M9 1422 aa38.85■■■■□ 3.81
LSM4-204ENST00000594828 UBTFP17480 764 aaKnown RBP38.84■■■■□ 3.81
LSM4-204ENST00000594828 RAPGEF6Q8TEU7 1601 aa38.84■■■■□ 3.81
LSM4-204ENST00000594828 CD109Q6YHK3 1445 aa38.82■■■■□ 3.81
LSM4-204ENST00000594828 COL17A1Q9UMD9 1497 aaPredicted RBP38.79■■■■□ 3.8
LSM4-204ENST00000594828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.78■■■■□ 3.8
LSM4-204ENST00000594828 HNRNPUL2Q1KMD3 747 aaKnown RBP38.78■■■■□ 3.8
LSM4-204ENST00000594828 CFAP43Q8NDM7 1665 aa38.78■■■■□ 3.8
LSM4-204ENST00000594828 EFCAB5A4FU69 1503 aa38.77■■■■□ 3.8
LSM4-204ENST00000594828 MAGI3Q5TCQ9 1506 aa38.75■■■■□ 3.79
LSM4-204ENST00000594828 NUP153P49790 1475 aaKnown RBP38.72■■■■□ 3.79
LSM4-204ENST00000594828 KDM4FA0A1W2PPD8 638 aa38.61■■■■□ 3.77
LSM4-204ENST00000594828 PLEKHD1A6NEE1 506 aa38.57■■■■□ 3.76
LSM4-204ENST00000594828 ABCA9Q8IUA7 1624 aa38.56■■■■□ 3.76
LSM4-204ENST00000594828 ARHGAP35Q9NRY4 1499 aa38.5■■■■□ 3.75
LSM4-204ENST00000594828 FMN1Q68DA7 1419 aa38.46■■■■□ 3.75
LSM4-204ENST00000594828 PHLDB1Q86UU1 1377 aa38.44■■■■□ 3.74
LSM4-204ENST00000594828 ARAP3Q8WWN8 1544 aa38.43■■■■□ 3.74
LSM4-204ENST00000594828 ATP1B4Q9UN42 357 aaPredicted RBP38.43■■■■□ 3.74
LSM4-204ENST00000594828 CDK13Q14004 1512 aaKnown RBP38.37■■■■□ 3.73
LSM4-204ENST00000594828 NEO1Q92859 1461 aa38.36■■■■□ 3.73
LSM4-204ENST00000594828 ADGRL1O94910 1474 aa38.35■■■■□ 3.73
LSM4-204ENST00000594828 HECW1Q76N89 1606 aa38.31■■■■□ 3.72
LSM4-204ENST00000594828 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38.28■■■■□ 3.724e-7■■■□□ 15.9
LSM4-204ENST00000594828 RAPGEF3O95398 923 aa38.28■■■■□ 3.72
LSM4-204ENST00000594828 CDK11AQ9UQ88 783 aaPredicted RBP38.26■■■■□ 3.72
LSM4-204ENST00000594828 TTC37Q6PGP7 1564 aa38.19■■■■□ 3.7
LSM4-204ENST00000594828 FANCAO15360 1455 aa38.18■■■■□ 3.7
LSM4-204ENST00000594828 AKNAQ7Z591 1439 aa38.17■■■■□ 3.7
LSM4-204ENST00000594828 CFAP74Q9C0B2 1584 aa38.11■■■■□ 3.69
LSM4-204ENST00000594828 DENND4BO75064 1496 aaPredicted RBP38.1■■■■□ 3.69
LSM4-204ENST00000594828 PLCH2O75038 1416 aa38.09■■■■□ 3.69
LSM4-204ENST00000594828 FRMPD1Q5SYB0 1578 aa38.08■■■■□ 3.69
LSM4-204ENST00000594828 CASKIN1Q8WXD9 1431 aa38.08■■■■□ 3.69
LSM4-204ENST00000594828 CLIP1P30622 1438 aa38.07■■■■□ 3.69
LSM4-204ENST00000594828 TROQ12816 1431 aaPredicted RBP38.06■■■■□ 3.68
LSM4-204ENST00000594828 LRRIQ1Q96JM4 1722 aa38.04■■■■□ 3.68
LSM4-204ENST00000594828 PCF11O94913 1555 aaKnown RBP38.02■■■■□ 3.68
LSM4-204ENST00000594828 KIF14Q15058 1648 aa37.99■■■■□ 3.67
LSM4-204ENST00000594828 CCDC18Q5T9S5 1454 aa37.99■■■■□ 3.67
LSM4-204ENST00000594828 EFCAB2Q5VUJ9 269 aa37.99■■■■□ 3.67
LSM4-204ENST00000594828 RICTORQ6R327 1708 aa37.98■■■■□ 3.67
LSM4-204ENST00000594828 MYO5CQ9NQX4 1742 aa37.95■■■■□ 3.67
LSM4-204ENST00000594828 SCAPERQ9BY12 1400 aa37.94■■■■□ 3.66
LSM4-204ENST00000594828 FYCO1Q9BQS8 1478 aa37.92■■■■□ 3.66
LSM4-204ENST00000594828 ARID4BQ4LE39 1312 aaPredicted RBP37.91■■■■□ 3.66
LSM4-204ENST00000594828 ZMYM4Q5VZL5 1548 aa37.87■■■■□ 3.65
LSM4-204ENST00000594828 ARHGEF40Q8TER5 1519 aa37.87■■■■□ 3.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms