RNA–Protein interactions for RNA: ENST00000593026.1

DDX39A-221, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 657 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-221ENST00000593026 RIMBP3CA6NJZ7 1639 aa24.75■■□□□ 1.55
DDX39A-221ENST00000593026 RIMBP3BA6NNM3 1639 aa24.75■■□□□ 1.55
DDX39A-221ENST00000593026 RIMBP3Q9UFD9 1639 aa24.75■■□□□ 1.55
DDX39A-221ENST00000593026 SHROOM2Q13796 1616 aa24.72■■□□□ 1.55
DDX39A-221ENST00000593026 KIF21BO75037 1637 aa24.68■■□□□ 1.54
DDX39A-221ENST00000593026 JPH4Q96JJ6 628 aa24.67■■□□□ 1.54
DDX39A-221ENST00000593026 IQGAP2Q13576 1575 aa24.67■■□□□ 1.54
DDX39A-221ENST00000593026 CTTNBP2Q8WZ74 1663 aa24.66■■□□□ 1.54
DDX39A-221ENST00000593026 PRG4Q92954 1404 aaPredicted RBP24.62■■□□□ 1.53
DDX39A-221ENST00000593026 ERCC6L2Q5T890 1561 aa24.61■■□□□ 1.53
DDX39A-221ENST00000593026 ARAP1Q96P48 1450 aa24.58■■□□□ 1.53
DDX39A-221ENST00000593026 GOLGA3Q08378 1498 aa24.56■■□□□ 1.52
DDX39A-221ENST00000593026 CYB5RLQ6IPT4 315 aa24.53■■□□□ 1.52
DDX39A-221ENST00000593026 UGGT2Q9NYU1 1516 aa24.52■■□□□ 1.52
DDX39A-221ENST00000593026 EHMT2Q96KQ7 1210 aa24.52■■□□□ 1.52
DDX39A-221ENST00000593026 CARMIL2Q6F5E8 1435 aa24.5■■□□□ 1.51
DDX39A-221ENST00000593026 UBTFP17480 764 aaKnown RBP24.46■■□□□ 1.51
DDX39A-221ENST00000593026 DISP1Q96F81 1524 aa24.45■■□□□ 1.51
DDX39A-221ENST00000593026 KIAA0556O60303 1618 aa24.43■■□□□ 1.5
DDX39A-221ENST00000593026 TNIKQ9UKE5 1360 aa24.39■■□□□ 1.49
DDX39A-221ENST00000593026 PTPRGP23470 1445 aa24.35■■□□□ 1.49
DDX39A-221ENST00000593026 RANGAP1P46060 587 aaPredicted RBP24.34■■□□□ 1.49
DDX39A-221ENST00000593026 SAMD9Q5K651 1589 aa24.33■■□□□ 1.49
DDX39A-221ENST00000593026 TTBK1Q5TCY1 1321 aaPredicted RBP24.33■■□□□ 1.48
DDX39A-221ENST00000593026 EFCAB5A4FU69 1503 aa24.28■■□□□ 1.48
DDX39A-221ENST00000593026 P3H3Q8IVL6 736 aa24.27■■□□□ 1.48
DDX39A-221ENST00000593026 ADCY10Q96PN6 1610 aa24.22■■□□□ 1.47
DDX39A-221ENST00000593026 FHOD3Q2V2M9 1422 aa24.2■■□□□ 1.46
DDX39A-221ENST00000593026 UACAQ9BZF9 1416 aa24.2■■□□□ 1.46
DDX39A-221ENST00000593026 LOC105371045A0A1W2PR82 267 aa24.17■■□□□ 1.46
DDX39A-221ENST00000593026 ARHGAP35Q9NRY4 1499 aa24.17■■□□□ 1.46
DDX39A-221ENST00000593026 ABCC2Q92887 1545 aa24.16■■□□□ 1.46
DDX39A-221ENST00000593026 UHRF1BP1LA0JNW5 1464 aa24.16■■□□□ 1.46
DDX39A-221ENST00000593026 PLB1Q6P1J6 1458 aa24.15■■□□□ 1.46
DDX39A-221ENST00000593026 TRHP20396 242 aaPredicted RBP24.15■■□□□ 1.46
DDX39A-221ENST00000593026 ABCA8O94911 1581 aa24.13■■□□□ 1.45
DDX39A-221ENST00000593026 NPM1P06748 294 aaKnown RBP eCLIP24.12■■□□□ 1.45
DDX39A-221ENST00000593026 CLIP1P30622 1438 aa24.11■■□□□ 1.45
DDX39A-221ENST00000593026 CEP162Q5TB80 1403 aa24.07■■□□□ 1.44
DDX39A-221ENST00000593026 RAPGEF6Q8TEU7 1601 aa24.06■■□□□ 1.44
DDX39A-221ENST00000593026 KDM5BQ9UGL1 1544 aa24.05■■□□□ 1.44
DDX39A-221ENST00000593026 FMN1Q68DA7 1419 aa24.04■■□□□ 1.44
DDX39A-221ENST00000593026 MAPKBP1O60336 1514 aa24.03■■□□□ 1.44
DDX39A-221ENST00000593026 ZCCHC11Q5TAX3 1644 aaKnown RBP24.02■■□□□ 1.44
DDX39A-221ENST00000593026 NUP153P49790 1475 aaKnown RBP23.96■■□□□ 1.43
DDX39A-221ENST00000593026 ARID3CA6NKF2 412 aa23.94■■□□□ 1.42
DDX39A-221ENST00000593026 ASXL2Q76L83 1435 aa23.93■■□□□ 1.42
DDX39A-221ENST00000593026 HECW1Q76N89 1606 aa23.93■■□□□ 1.42
DDX39A-221ENST00000593026 ATP10BO94823 1461 aa23.92■■□□□ 1.42
DDX39A-221ENST00000593026 PCF11O94913 1555 aaKnown RBP23.9■■□□□ 1.42
DDX39A-221ENST00000593026 ATP1B4Q9UN42 357 aaPredicted RBP23.89■■□□□ 1.41
DDX39A-221ENST00000593026 ABCC10Q5T3U5 1492 aa23.87■■□□□ 1.41
DDX39A-221ENST00000593026 CASKIN1Q8WXD9 1431 aa23.87■■□□□ 1.41
DDX39A-221ENST00000593026 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.87■■□□□ 1.41
DDX39A-221ENST00000593026 HNRNPUL2Q1KMD3 747 aaKnown RBP23.87■■□□□ 1.41
DDX39A-221ENST00000593026 DIP2BQ9P265 1576 aa23.86■■□□□ 1.41
DDX39A-221ENST00000593026 WDR7Q9Y4E6 1490 aa23.86■■□□□ 1.41
DDX39A-221ENST00000593026 FYCO1Q9BQS8 1478 aa23.85■■□□□ 1.41
DDX39A-221ENST00000593026 KIF13AQ9H1H9 1805 aa23.84■■□□□ 1.41
DDX39A-221ENST00000593026 EPRSP07814 1512 aaKnown RBP23.84■■□□□ 1.41
DDX39A-221ENST00000593026 CDK13Q14004 1512 aaKnown RBP23.83■■□□□ 1.41
DDX39A-221ENST00000593026 FAM69CQ0P6D2 419 aa23.82■■□□□ 1.4
DDX39A-221ENST00000593026 LRRIQ1Q96JM4 1722 aa23.79■■□□□ 1.4
DDX39A-221ENST00000593026 CCDC18Q5T9S5 1454 aa23.77■■□□□ 1.4
DDX39A-221ENST00000593026 VPS8Q8N3P4 1428 aa23.76■■□□□ 1.39
DDX39A-221ENST00000593026 GLI2P10070 1586 aa23.76■■□□□ 1.39
DDX39A-221ENST00000593026 PLEKHD1A6NEE1 506 aa23.75■■□□□ 1.39
DDX39A-221ENST00000593026 KCNH8Q96L42 1107 aa23.74■■□□□ 1.39
DDX39A-221ENST00000593026 CDK11AQ9UQ88 783 aaPredicted RBP23.71■■□□□ 1.39
DDX39A-221ENST00000593026 MAP3K4Q9Y6R4 1608 aa23.67■■□□□ 1.38
DDX39A-221ENST00000593026 TSPOAP1O95153 1857 aa23.65■■□□□ 1.38
DDX39A-221ENST00000593026 CFAP43Q8NDM7 1665 aa23.65■■□□□ 1.38
DDX39A-221ENST00000593026 ABCA9Q8IUA7 1624 aa23.64■■□□□ 1.38
DDX39A-221ENST00000593026 TROQ12816 1431 aaPredicted RBP23.64■■□□□ 1.37
DDX39A-221ENST00000593026 CD109Q6YHK3 1445 aa23.6■■□□□ 1.37
DDX39A-221ENST00000593026 MAGI3Q5TCQ9 1506 aa23.6■■□□□ 1.37
DDX39A-221ENST00000593026 KIF14Q15058 1648 aa23.59■■□□□ 1.37
DDX39A-221ENST00000593026 PPRC1Q5VV67 1664 aaKnown RBP23.58■■□□□ 1.37
DDX39A-221ENST00000593026 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.58■■□□□ 1.36
DDX39A-221ENST00000593026 TIAM1Q13009 1591 aa23.56■■□□□ 1.36
DDX39A-221ENST00000593026 TTC37Q6PGP7 1564 aa23.56■■□□□ 1.36
DDX39A-221ENST00000593026 TEX14Q8IWB6 1497 aa23.56■■□□□ 1.36
DDX39A-221ENST00000593026 MTUS2Q5JR59 1369 aa23.55■■□□□ 1.36
DDX39A-221ENST00000593026 MAP3K1Q13233 1512 aa23.52■■□□□ 1.36
DDX39A-221ENST00000593026 EHBP1L1Q8N3D4 1523 aa23.52■■□□□ 1.36
DDX39A-221ENST00000593026 APLP2Q06481 763 aa23.49■■□□□ 1.35
DDX39A-221ENST00000593026 MYO5CQ9NQX4 1742 aa23.47■■□□□ 1.35
DDX39A-221ENST00000593026 LRRC9Q6ZRR7 1453 aa23.44■■□□□ 1.34
DDX39A-221ENST00000593026 PLCH2O75038 1416 aa23.43■■□□□ 1.34
DDX39A-221ENST00000593026 KDM6BO15054 1643 aa23.43■■□□□ 1.34
DDX39A-221ENST00000593026 NEO1Q92859 1461 aa23.42■■□□□ 1.34
DDX39A-221ENST00000593026 CFAP74Q9C0B2 1584 aa23.41■■□□□ 1.34
DDX39A-221ENST00000593026 ARAP3Q8WWN8 1544 aa23.41■■□□□ 1.34
DDX39A-221ENST00000593026 SUPT6HQ7KZ85 1726 aaKnown RBP23.41■■□□□ 1.34
DDX39A-221ENST00000593026 FANCAO15360 1455 aa23.41■■□□□ 1.34
DDX39A-221ENST00000593026 KANK4Q5T7N3 995 aaPredicted RBP23.39■■□□□ 1.33
DDX39A-221ENST00000593026 PREX2Q70Z35 1606 aa23.39■■□□□ 1.33
DDX39A-221ENST00000593026 PHLDB1Q86UU1 1377 aa23.39■■□□□ 1.33
DDX39A-221ENST00000593026 CDC42BPAQ5VT25 1732 aa23.38■■□□□ 1.33
DDX39A-221ENST00000593026 ARHGAP5Q13017 1502 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms