RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 CUL7Q14999 1698 aa16.07■□□□□ 0.16
DDX39A-220ENST00000593008 JPH4Q96JJ6 628 aa16.05■□□□□ 0.16
DDX39A-220ENST00000593008 EHMT2Q96KQ7 1210 aa16.03■□□□□ 0.16
DDX39A-220ENST00000593008 PRG4Q92954 1404 aaPredicted RBP16.02■□□□□ 0.16
DDX39A-220ENST00000593008 SHROOM2Q13796 1616 aa16.02■□□□□ 0.16
DDX39A-220ENST00000593008 EEA1Q15075 1411 aa16.01■□□□□ 0.15
DDX39A-220ENST00000593008 CSRNP3Q8WYN3 585 aa16■□□□□ 0.15
DDX39A-220ENST00000593008 PRXQ9BXM0 1461 aa15.99■□□□□ 0.15
DDX39A-220ENST00000593008 KIAA0586Q9BVV6 1533 aa15.99■□□□□ 0.15
DDX39A-220ENST00000593008 RAPGEF2Q9Y4G8 1499 aa15.97■□□□□ 0.15
DDX39A-220ENST00000593008 TRHP20396 242 aaPredicted RBP15.95■□□□□ 0.14
DDX39A-220ENST00000593008 KIF21BO75037 1637 aa15.94■□□□□ 0.14
DDX39A-220ENST00000593008 TTBK1Q5TCY1 1321 aaPredicted RBP15.91■□□□□ 0.14
DDX39A-220ENST00000593008 IQGAP2Q13576 1575 aa15.87■□□□□ 0.13
DDX39A-220ENST00000593008 GOLGA3Q08378 1498 aa15.86■□□□□ 0.13
DDX39A-220ENST00000593008 LOC105371045A0A1W2PR82 267 aa15.86■□□□□ 0.13
DDX39A-220ENST00000593008 CARMIL2Q6F5E8 1435 aa15.84■□□□□ 0.13
DDX39A-220ENST00000593008 PTPRGP23470 1445 aa15.82■□□□□ 0.12
DDX39A-220ENST00000593008 DISP1Q96F81 1524 aa15.8■□□□□ 0.12
DDX39A-220ENST00000593008 TNIKQ9UKE5 1360 aa15.8■□□□□ 0.12
DDX39A-220ENST00000593008 CTTNBP2Q8WZ74 1663 aa15.79■□□□□ 0.12
DDX39A-220ENST00000593008 UGGT2Q9NYU1 1516 aa15.78■□□□□ 0.12
DDX39A-220ENST00000593008 NPM1P06748 294 aaKnown RBP eCLIP15.77■□□□□ 0.12
DDX39A-220ENST00000593008 ADCY10Q96PN6 1610 aa15.76■□□□□ 0.11
DDX39A-220ENST00000593008 UBTFP17480 764 aaKnown RBP15.76■□□□□ 0.11
DDX39A-220ENST00000593008 RANGAP1P46060 587 aaPredicted RBP15.76■□□□□ 0.11
DDX39A-220ENST00000593008 KIAA0556O60303 1618 aa15.73■□□□□ 0.11
DDX39A-220ENST00000593008 P3H3Q8IVL6 736 aa15.71■□□□□ 0.11
DDX39A-220ENST00000593008 UACAQ9BZF9 1416 aa15.69■□□□□ 0.1
DDX39A-220ENST00000593008 FAM69CQ0P6D2 419 aa15.67■□□□□ 0.1
DDX39A-220ENST00000593008 ABCC2Q92887 1545 aa15.66■□□□□ 0.1
DDX39A-220ENST00000593008 MAPKBP1O60336 1514 aa15.65■□□□□ 0.1
DDX39A-220ENST00000593008 UHRF1BP1LA0JNW5 1464 aa15.65■□□□□ 0.1
DDX39A-220ENST00000593008 PLB1Q6P1J6 1458 aa15.65■□□□□ 0.1
DDX39A-220ENST00000593008 SAMD9Q5K651 1589 aa15.64■□□□□ 0.09
DDX39A-220ENST00000593008 CEP162Q5TB80 1403 aa15.64■□□□□ 0.09
DDX39A-220ENST00000593008 ABCC10Q5T3U5 1492 aa15.63■□□□□ 0.09
DDX39A-220ENST00000593008 ARHGAP35Q9NRY4 1499 aa15.63■□□□□ 0.09
DDX39A-220ENST00000593008 FHOD3Q2V2M9 1422 aa15.61■□□□□ 0.09
DDX39A-220ENST00000593008 ASXL2Q76L83 1435 aa15.6■□□□□ 0.09
DDX39A-220ENST00000593008 ARID3CA6NKF2 412 aa15.6■□□□□ 0.09
DDX39A-220ENST00000593008 CLIP1P30622 1438 aa15.6■□□□□ 0.09
DDX39A-220ENST00000593008 KIF13AQ9H1H9 1805 aa15.59■□□□□ 0.09
DDX39A-220ENST00000593008 DIP2BQ9P265 1576 aa15.58■□□□□ 0.09
DDX39A-220ENST00000593008 KDM5BQ9UGL1 1544 aa15.58■□□□□ 0.08
DDX39A-220ENST00000593008 ABCA8O94911 1581 aa15.57■□□□□ 0.08
DDX39A-220ENST00000593008 EFCAB5A4FU69 1503 aa15.56■□□□□ 0.08
DDX39A-220ENST00000593008 ZCCHC11Q5TAX3 1644 aaKnown RBP15.55■□□□□ 0.08
DDX39A-220ENST00000593008 KCNH8Q96L42 1107 aa15.5■□□□□ 0.07
DDX39A-220ENST00000593008 EPRSP07814 1512 aaKnown RBP15.49■□□□□ 0.07
DDX39A-220ENST00000593008 WDR7Q9Y4E6 1490 aa15.48■□□□□ 0.07
DDX39A-220ENST00000593008 ATP10BO94823 1461 aa15.47■□□□□ 0.07
DDX39A-220ENST00000593008 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.47■□□□□ 0.07
DDX39A-220ENST00000593008 TSPOAP1O95153 1857 aa15.47■□□□□ 0.07
DDX39A-220ENST00000593008 HNRNPUL2Q1KMD3 747 aaKnown RBP15.47■□□□□ 0.07
DDX39A-220ENST00000593008 PCF11O94913 1555 aaKnown RBP15.46■□□□□ 0.07
DDX39A-220ENST00000593008 RAPGEF6Q8TEU7 1601 aa15.46■□□□□ 0.06
DDX39A-220ENST00000593008 GLI2P10070 1586 aa15.45■□□□□ 0.06
DDX39A-220ENST00000593008 NUP153P49790 1475 aaKnown RBP15.44■□□□□ 0.06
DDX39A-220ENST00000593008 ATP1B4Q9UN42 357 aaPredicted RBP15.42■□□□□ 0.06
DDX39A-220ENST00000593008 AEBP2Q6ZN18 517 aaPredicted RBP15.4■□□□□ 0.06
DDX39A-220ENST00000593008 VPS8Q8N3P4 1428 aa15.39■□□□□ 0.05
DDX39A-220ENST00000593008 LRRIQ1Q96JM4 1722 aa15.39■□□□□ 0.05
DDX39A-220ENST00000593008 MAP3K4Q9Y6R4 1608 aa15.39■□□□□ 0.05
DDX39A-220ENST00000593008 PPRC1Q5VV67 1664 aaKnown RBP15.38■□□□□ 0.05
DDX39A-220ENST00000593008 FMN1Q68DA7 1419 aa15.37■□□□□ 0.05
DDX39A-220ENST00000593008 CD109Q6YHK3 1445 aa15.37■□□□□ 0.05
DDX39A-220ENST00000593008 KDM6BO15054 1643 aa15.37■□□□□ 0.05
DDX39A-220ENST00000593008 CDK13Q14004 1512 aaKnown RBP15.37■□□□□ 0.05
DDX39A-220ENST00000593008 CASKIN1Q8WXD9 1431 aa15.34■□□□□ 0.05
DDX39A-220ENST00000593008 PLEKHD1A6NEE1 506 aa15.34■□□□□ 0.05
DDX39A-220ENST00000593008 HECW1Q76N89 1606 aa15.34■□□□□ 0.05
DDX39A-220ENST00000593008 TEX14Q8IWB6 1497 aa15.33■□□□□ 0.05
DDX39A-220ENST00000593008 FYCO1Q9BQS8 1478 aa15.33■□□□□ 0.05
DDX39A-220ENST00000593008 COL17A1Q9UMD9 1497 aaPredicted RBP15.32■□□□□ 0.04
DDX39A-220ENST00000593008 MAGI3Q5TCQ9 1506 aa15.3■□□□□ 0.04
DDX39A-220ENST00000593008 CFAP43Q8NDM7 1665 aa15.3■□□□□ 0.04
DDX39A-220ENST00000593008 ABCA9Q8IUA7 1624 aa15.27■□□□□ 0.03
DDX39A-220ENST00000593008 TIAM1Q13009 1591 aa15.24■□□□□ 0.03
DDX39A-220ENST00000593008 CDK11AQ9UQ88 783 aaPredicted RBP15.23■□□□□ 0.03
DDX39A-220ENST00000593008 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.22■□□□□ 0.032e-7■□□□□ 10.7
DDX39A-220ENST00000593008 PPARGC1BQ86YN6 1023 aaKnown RBP15.22■□□□□ 0.03
DDX39A-220ENST00000593008 CCDC18Q5T9S5 1454 aa15.21■□□□□ 0.03
DDX39A-220ENST00000593008 TTC37Q6PGP7 1564 aa15.2■□□□□ 0.02
DDX39A-220ENST00000593008 RAPGEF3O95398 923 aa15.19■□□□□ 0.02
DDX39A-220ENST00000593008 KANK4Q5T7N3 995 aaPredicted RBP15.19■□□□□ 0.02
DDX39A-220ENST00000593008 TROQ12816 1431 aaPredicted RBP15.18■□□□□ 0.02
DDX39A-220ENST00000593008 KIF14Q15058 1648 aa15.18■□□□□ 0.02
DDX39A-220ENST00000593008 ARAP3Q8WWN8 1544 aa15.17■□□□□ 0.02
DDX39A-220ENST00000593008 NEO1Q92859 1461 aa15.17■□□□□ 0.02
DDX39A-220ENST00000593008 FANCAO15360 1455 aa15.16■□□□□ 0.02
DDX39A-220ENST00000593008 PHLDB1Q86UU1 1377 aa15.16■□□□□ 0.02
DDX39A-220ENST00000593008 LRRC9Q6ZRR7 1453 aa15.14■□□□□ 0.01
DDX39A-220ENST00000593008 KDM4FA0A1W2PPD8 638 aa15.14■□□□□ 0.01
DDX39A-220ENST00000593008 PLCH2O75038 1416 aa15.14■□□□□ 0.01
DDX39A-220ENST00000593008 AKNAQ7Z591 1439 aa15.14■□□□□ 0.01
DDX39A-220ENST00000593008 EHBP1L1Q8N3D4 1523 aa15.13■□□□□ 0.01
DDX39A-220ENST00000593008 MAP3K1Q13233 1512 aa15.12■□□□□ 0.01
DDX39A-220ENST00000593008 MTUS2Q5JR59 1369 aa15.11■□□□□ 0.01
DDX39A-220ENST00000593008 DENND4BO75064 1496 aaPredicted RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms