RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 JPH4Q96JJ6 628 aa34.79■■■■□ 3.16
SS18-224ENST00000584083 PRG4Q92954 1404 aaPredicted RBP34.73■■■■□ 3.15
SS18-224ENST00000584083 KIAA0586Q9BVV6 1533 aa34.69■■■■□ 3.14
SS18-224ENST00000584083 TRHP20396 242 aaPredicted RBP34.64■■■■□ 3.14
SS18-224ENST00000584083 RAPGEF2Q9Y4G8 1499 aa34.57■■■■□ 3.12
SS18-224ENST00000584083 IQGAP2Q13576 1575 aa34.47■■■■□ 3.11
SS18-224ENST00000584083 CARMIL2Q6F5E8 1435 aa34.37■■■■□ 3.09
SS18-224ENST00000584083 PRXQ9BXM0 1461 aa34.33■■■■□ 3.09
SS18-224ENST00000584083 TTBK1Q5TCY1 1321 aaPredicted RBP34.3■■■■□ 3.08
SS18-224ENST00000584083 CTTNBP2Q8WZ74 1663 aa34.29■■■■□ 3.08
SS18-224ENST00000584083 PTPRGP23470 1445 aa34.29■■■■□ 3.08
SS18-224ENST00000584083 CSRNP3Q8WYN3 585 aa34.28■■■■□ 3.08
SS18-224ENST00000584083 TNIKQ9UKE5 1360 aa34.26■■■■□ 3.08
SS18-224ENST00000584083 NPM1P06748 294 aaKnown RBP eCLIP34.26■■■■□ 3.08
SS18-224ENST00000584083 UGGT2Q9NYU1 1516 aa34.25■■■■□ 3.07
SS18-224ENST00000584083 ADCY10Q96PN6 1610 aa34.24■■■■□ 3.07
SS18-224ENST00000584083 DISP1Q96F81 1524 aa34.22■■■■□ 3.07
SS18-224ENST00000584083 EEA1Q15075 1411 aa34.21■■■■□ 3.07
SS18-224ENST00000584083 CHIC1Q5VXU3 224 aa34.17■■■■□ 3.06
SS18-224ENST00000584083 FAM9AQ8IZU1 332 aaPredicted RBP34.16■■■■□ 3.06
SS18-224ENST00000584083 KIAA0556O60303 1618 aa34.13■■■■□ 3.05
SS18-224ENST00000584083 MAPKBP1O60336 1514 aa34.06■■■■□ 3.04
SS18-224ENST00000584083 KIF13AQ9H1H9 1805 aa34.06■■■■□ 3.04
SS18-224ENST00000584083 GOLGA3Q08378 1498 aa34.06■■■■□ 3.04
SS18-224ENST00000584083 UACAQ9BZF9 1416 aa34.02■■■■□ 3.04
SS18-224ENST00000584083 UHRF1BP1LA0JNW5 1464 aa33.99■■■■□ 3.03
SS18-224ENST00000584083 ABCC2Q92887 1545 aa33.99■■■■□ 3.03
SS18-224ENST00000584083 ABCC10Q5T3U5 1492 aa33.96■■■■□ 3.03
SS18-224ENST00000584083 FAM69CQ0P6D2 419 aa33.96■■■■□ 3.03
SS18-224ENST00000584083 DIP2BQ9P265 1576 aa33.9■■■■□ 3.02
SS18-224ENST00000584083 KIF21BO75037 1637 aa33.9■■■■□ 3.02
SS18-224ENST00000584083 P3H3Q8IVL6 736 aa33.87■■■■□ 3.01
SS18-224ENST00000584083 PLB1Q6P1J6 1458 aa33.84■■■■□ 3.01
SS18-224ENST00000584083 ASXL2Q76L83 1435 aa33.83■■■■□ 3.01
SS18-224ENST00000584083 KDM5BQ9UGL1 1544 aa33.83■■■■□ 3.01
SS18-224ENST00000584083 RANGAP1P46060 587 aaPredicted RBP33.81■■■■□ 3
SS18-224ENST00000584083 ZCCHC11Q5TAX3 1644 aaKnown RBP33.8■■■■□ 3
SS18-224ENST00000584083 EHMT2Q96KQ7 1210 aa33.78■■■■□ 3
SS18-224ENST00000584083 ABCA8O94911 1581 aa33.77■■■■□ 3
SS18-224ENST00000584083 SAMD9Q5K651 1589 aa33.77■■■■□ 3
SS18-224ENST00000584083 TSPOAP1O95153 1857 aa33.75■■■□□ 2.99
SS18-224ENST00000584083 UBTFP17480 764 aaKnown RBP33.71■■■□□ 2.99
SS18-224ENST00000584083 GLI2P10070 1586 aa33.64■■■□□ 2.98
SS18-224ENST00000584083 EPRSP07814 1512 aaKnown RBP33.61■■■□□ 2.97
SS18-224ENST00000584083 FHOD3Q2V2M9 1422 aa33.6■■■□□ 2.97
SS18-224ENST00000584083 WDR7Q9Y4E6 1490 aa33.59■■■□□ 2.97
SS18-224ENST00000584083 ARID3CA6NKF2 412 aa33.59■■■□□ 2.97
SS18-224ENST00000584083 EFCAB5A4FU69 1503 aa33.58■■■□□ 2.97
SS18-224ENST00000584083 RAPGEF6Q8TEU7 1601 aa33.56■■■□□ 2.96
SS18-224ENST00000584083 ATP10BO94823 1461 aa33.51■■■□□ 2.96
SS18-224ENST00000584083 KCNH8Q96L42 1107 aa33.51■■■□□ 2.95
SS18-224ENST00000584083 MAP3K4Q9Y6R4 1608 aa33.5■■■□□ 2.95
SS18-224ENST00000584083 KDM6BO15054 1643 aa33.49■■■□□ 2.95
SS18-224ENST00000584083 PPRC1Q5VV67 1664 aaKnown RBP33.48■■■□□ 2.95
SS18-224ENST00000584083 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.44■■■□□ 2.94
SS18-224ENST00000584083 HNRNPUL2Q1KMD3 747 aaKnown RBP33.44■■■□□ 2.94
SS18-224ENST00000584083 NUP153P49790 1475 aaKnown RBP33.4■■■□□ 2.94
SS18-224ENST00000584083 TEX14Q8IWB6 1497 aa33.37■■■□□ 2.93
SS18-224ENST00000584083 CFAP43Q8NDM7 1665 aa33.36■■■□□ 2.93
SS18-224ENST00000584083 ARHGAP35Q9NRY4 1499 aa33.36■■■□□ 2.93
SS18-224ENST00000584083 CD109Q6YHK3 1445 aa33.35■■■□□ 2.93
SS18-224ENST00000584083 FMN1Q68DA7 1419 aa33.28■■■□□ 2.92
SS18-224ENST00000584083 ATP1B4Q9UN42 357 aaPredicted RBP33.26■■■□□ 2.91
SS18-224ENST00000584083 MAGI3Q5TCQ9 1506 aa33.26■■■□□ 2.91
SS18-224ENST00000584083 PLEKHD1A6NEE1 506 aa33.24■■■□□ 2.91
SS18-224ENST00000584083 ABCA9Q8IUA7 1624 aa33.2■■■□□ 2.91
SS18-224ENST00000584083 COL17A1Q9UMD9 1497 aaPredicted RBP33.19■■■□□ 2.9
SS18-224ENST00000584083 HECW1Q76N89 1606 aa33.17■■■□□ 2.9
SS18-224ENST00000584083 CDK13Q14004 1512 aaKnown RBP33.17■■■□□ 2.9
SS18-224ENST00000584083 AEBP2Q6ZN18 517 aaPredicted RBP33.15■■■□□ 2.9
SS18-224ENST00000584083 CLIP1P30622 1438 aa33.08■■■□□ 2.89
SS18-224ENST00000584083 CDK11AQ9UQ88 783 aaPredicted RBP33.03■■■□□ 2.88
SS18-224ENST00000584083 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33■■■□□ 2.87
SS18-224ENST00000584083 LRRIQ1Q96JM4 1722 aa32.99■■■□□ 2.87
SS18-224ENST00000584083 PHLDB1Q86UU1 1377 aa32.99■■■□□ 2.87
SS18-224ENST00000584083 PCF11O94913 1555 aaKnown RBP32.99■■■□□ 2.87
SS18-224ENST00000584083 ARAP3Q8WWN8 1544 aa32.98■■■□□ 2.87
SS18-224ENST00000584083 CASKIN1Q8WXD9 1431 aa32.97■■■□□ 2.87
SS18-224ENST00000584083 NEO1Q92859 1461 aa32.97■■■□□ 2.87
SS18-224ENST00000584083 TTC37Q6PGP7 1564 aa32.96■■■□□ 2.87
SS18-224ENST00000584083 CCDC18Q5T9S5 1454 aa32.89■■■□□ 2.86
SS18-224ENST00000584083 FYCO1Q9BQS8 1478 aa32.88■■■□□ 2.85
SS18-224ENST00000584083 TROQ12816 1431 aaPredicted RBP32.88■■■□□ 2.85
SS18-224ENST00000584083 CFAP74Q9C0B2 1584 aa32.87■■■□□ 2.85
SS18-224ENST00000584083 FANCAO15360 1455 aa32.86■■■□□ 2.85
SS18-224ENST00000584083 KDM4FA0A1W2PPD8 638 aa32.86■■■□□ 2.85
SS18-224ENST00000584083 KIF14Q15058 1648 aa32.85■■■□□ 2.85
SS18-224ENST00000584083 RAPGEF3O95398 923 aa32.85■■■□□ 2.85
SS18-224ENST00000584083 CEP162Q5TB80 1403 aa32.84■■■□□ 2.85
SS18-224ENST00000584083 LOC105371045A0A1W2PR82 267 aa32.83■■■□□ 2.85
SS18-224ENST00000584083 AKNAQ7Z591 1439 aa32.83■■■□□ 2.85
SS18-224ENST00000584083 MYO5CQ9NQX4 1742 aa32.81■■■□□ 2.84
SS18-224ENST00000584083 PLCH2O75038 1416 aa32.8■■■□□ 2.84
SS18-224ENST00000584083 DENND4BO75064 1496 aaPredicted RBP32.76■■■□□ 2.84
SS18-224ENST00000584083 ADGRL1O94910 1474 aa32.76■■■□□ 2.84
SS18-224ENST00000584083 FRMPD1Q5SYB0 1578 aa32.75■■■□□ 2.83
SS18-224ENST00000584083 EFCAB2Q5VUJ9 269 aa32.72■■■□□ 2.83
SS18-224ENST00000584083 RICTORQ6R327 1708 aa32.71■■■□□ 2.83
SS18-224ENST00000584083 ARHGAP5Q13017 1502 aa32.67■■■□□ 2.82
SS18-224ENST00000584083 SCAPERQ9BY12 1400 aa32.65■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms