RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 CEP162Q5TB80 1403 aa38.66■■■■□ 3.78
ATPAF1-213ENST00000574428 CEP170Q5SW79 1584 aa38.65■■■■□ 3.78
ATPAF1-213ENST00000574428 RANGAP1P46060 587 aaPredicted RBP38.62■■■■□ 3.77
ATPAF1-213ENST00000574428 NUP160Q12769 1436 aa38.59■■■■□ 3.77
ATPAF1-213ENST00000574428 IQGAP2Q13576 1575 aa38.52■■■■□ 3.76
ATPAF1-213ENST00000574428 CLIP1P30622 1438 aa38.52■■■■□ 3.76
ATPAF1-213ENST00000574428 KIAA0586Q9BVV6 1533 aa38.52■■■■□ 3.76
ATPAF1-213ENST00000574428 ARHGAP35Q9NRY4 1499 aa38.36■■■■□ 3.73
ATPAF1-213ENST00000574428 UGGT2Q9NYU1 1516 aa38.32■■■■□ 3.72
ATPAF1-213ENST00000574428 EFCAB5A4FU69 1503 aa38.3■■■■□ 3.72
ATPAF1-213ENST00000574428 CLASP1Q7Z460 1538 aa38.3■■■■□ 3.72
ATPAF1-213ENST00000574428 SAMD9Q5K651 1589 aa38.28■■■■□ 3.72
ATPAF1-213ENST00000574428 ARAP1Q96P48 1450 aa38.25■■■■□ 3.71
ATPAF1-213ENST00000574428 P3H3Q8IVL6 736 aa38.24■■■■□ 3.71
ATPAF1-213ENST00000574428 JPH4Q96JJ6 628 aa38.24■■■■□ 3.71
ATPAF1-213ENST00000574428 OSCARQ8IYS5 282 aa38.21■■■■□ 3.71
ATPAF1-213ENST00000574428 DISP1Q96F81 1524 aa38.18■■■■□ 3.7
ATPAF1-213ENST00000574428 FHOD3Q2V2M9 1422 aa38.18■■■■□ 3.7
ATPAF1-213ENST00000574428 SHROOM2Q13796 1616 aa38.17■■■■□ 3.7
ATPAF1-213ENST00000574428 KIAA0556O60303 1618 aa38.14■■■■□ 3.7
ATPAF1-213ENST00000574428 PRG4Q92954 1404 aaPredicted RBP38.09■■■■□ 3.69
ATPAF1-213ENST00000574428 VPS8Q8N3P4 1428 aa38.07■■■■□ 3.69
ATPAF1-213ENST00000574428 CARMIL2Q6F5E8 1435 aa38.06■■■■□ 3.68
ATPAF1-213ENST00000574428 ERCC6L2Q5T890 1561 aa37.98■■■■□ 3.67
ATPAF1-213ENST00000574428 FMN1Q68DA7 1419 aa37.93■■■■□ 3.66
ATPAF1-213ENST00000574428 TTBK1Q5TCY1 1321 aaPredicted RBP37.93■■■■□ 3.66
ATPAF1-213ENST00000574428 PCF11O94913 1555 aaKnown RBP37.87■■■■□ 3.65
ATPAF1-213ENST00000574428 CASKIN1Q8WXD9 1431 aa37.78■■■■□ 3.64
ATPAF1-213ENST00000574428 PTPRGP23470 1445 aa37.77■■■■□ 3.64
ATPAF1-213ENST00000574428 FYCO1Q9BQS8 1478 aa37.76■■■■□ 3.64
ATPAF1-213ENST00000574428 ATP1B4Q9UN42 357 aaPredicted RBP37.73■■■■□ 3.63
ATPAF1-213ENST00000574428 PLB1Q6P1J6 1458 aa37.7■■■■□ 3.63
ATPAF1-213ENST00000574428 RAPGEF6Q8TEU7 1601 aa37.68■■■■□ 3.62
ATPAF1-213ENST00000574428 HECW1Q76N89 1606 aa37.65■■■■□ 3.62
ATPAF1-213ENST00000574428 ABCA8O94911 1581 aa37.63■■■■□ 3.62
ATPAF1-213ENST00000574428 ARHGEF11O15085 1522 aa37.63■■■■□ 3.61
ATPAF1-213ENST00000574428 APLP2Q06481 763 aa37.63■■■■□ 3.61
ATPAF1-213ENST00000574428 LRRIQ1Q96JM4 1722 aa37.61■■■■□ 3.61
ATPAF1-213ENST00000574428 PPARGC1BQ86YN6 1023 aaKnown RBP37.58■■■■□ 3.61
ATPAF1-213ENST00000574428 NUP153P49790 1475 aaKnown RBP37.57■■■■□ 3.61
ATPAF1-213ENST00000574428 TIAM1Q13009 1591 aa37.55■■■■□ 3.6
ATPAF1-213ENST00000574428 UACAQ9BZF9 1416 aa37.54■■■■□ 3.6
ATPAF1-213ENST00000574428 ARID3CA6NKF2 412 aa37.53■■■■□ 3.6
ATPAF1-213ENST00000574428 CFAP43Q8NDM7 1665 aa37.53■■■■□ 3.6
ATPAF1-213ENST00000574428 RIMBP3CA6NJZ7 1639 aa37.52■■■■□ 3.6
ATPAF1-213ENST00000574428 RIMBP3BA6NNM3 1639 aa37.52■■■■□ 3.6
ATPAF1-213ENST00000574428 RIMBP3Q9UFD9 1639 aa37.52■■■■□ 3.6
ATPAF1-213ENST00000574428 EPRSP07814 1512 aaKnown RBP37.51■■■■□ 3.6
ATPAF1-213ENST00000574428 MAP3K1Q13233 1512 aa37.5■■■■□ 3.59
ATPAF1-213ENST00000574428 CDK13Q14004 1512 aaKnown RBP37.49■■■■□ 3.59
ATPAF1-213ENST00000574428 CCDC18Q5T9S5 1454 aa37.48■■■■□ 3.59
ATPAF1-213ENST00000574428 ABCC2Q92887 1545 aa37.46■■■■□ 3.59
ATPAF1-213ENST00000574428 KANK4Q5T7N3 995 aaPredicted RBP37.43■■■■□ 3.58
ATPAF1-213ENST00000574428 UHRF1BP1LA0JNW5 1464 aa37.4■■■■□ 3.58
ATPAF1-213ENST00000574428 ADCY10Q96PN6 1610 aa37.37■■■■□ 3.57
ATPAF1-213ENST00000574428 LRRC9Q6ZRR7 1453 aa37.36■■■■□ 3.57
ATPAF1-213ENST00000574428 ATP10BO94823 1461 aa37.35■■■■□ 3.57
ATPAF1-213ENST00000574428 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.34■■■■□ 3.57
ATPAF1-213ENST00000574428 HNRNPUL2Q1KMD3 747 aaKnown RBP37.34■■■■□ 3.57
ATPAF1-213ENST00000574428 MAGI3Q5TCQ9 1506 aa37.3■■■■□ 3.56
ATPAF1-213ENST00000574428 MTUS2Q5JR59 1369 aa37.27■■■■□ 3.56
ATPAF1-213ENST00000574428 CYB5RLQ6IPT4 315 aa37.26■■■■□ 3.56
ATPAF1-213ENST00000574428 KDM5BQ9UGL1 1544 aa37.24■■■■□ 3.55
ATPAF1-213ENST00000574428 ZCCHC11Q5TAX3 1644 aaKnown RBP37.24■■■■□ 3.55
ATPAF1-213ENST00000574428 EHBP1L1Q8N3D4 1523 aa37.22■■■■□ 3.55
ATPAF1-213ENST00000574428 CDK11AQ9UQ88 783 aaPredicted RBP37.19■■■■□ 3.54
ATPAF1-213ENST00000574428 TROQ12816 1431 aaPredicted RBP37.12■■■■□ 3.53
ATPAF1-213ENST00000574428 PLEKHD1A6NEE1 506 aa37.11■■■■□ 3.53
ATPAF1-213ENST00000574428 SUPT6HQ7KZ85 1726 aaKnown RBP37.09■■■■□ 3.53
ATPAF1-213ENST00000574428 NCOA2Q15596 1464 aa37.04■■■■□ 3.52
ATPAF1-213ENST00000574428 NPM1P06748 294 aaKnown RBP eCLIP37.04■■■■□ 3.52
ATPAF1-213ENST00000574428 KIF14Q15058 1648 aa37.01■■■■□ 3.52
ATPAF1-213ENST00000574428 PHLDB1Q86UU1 1377 aa36.99■■■■□ 3.51
ATPAF1-213ENST00000574428 DNAJC5Q9H3Z4 198 aa36.99■■■■□ 3.51
ATPAF1-213ENST00000574428 ASXL2Q76L83 1435 aa36.94■■■■□ 3.5
ATPAF1-213ENST00000574428 WDR7Q9Y4E6 1490 aa36.93■■■■□ 3.5
ATPAF1-213ENST00000574428 TRIM26Q12899 539 aaPredicted RBP36.92■■■■□ 3.5
ATPAF1-213ENST00000574428 KCNH8Q96L42 1107 aa36.89■■■■□ 3.5
ATPAF1-213ENST00000574428 MYOM3Q5VTT5 1437 aa36.85■■■■□ 3.49
ATPAF1-213ENST00000574428 ABCC10Q5T3U5 1492 aa36.84■■■■□ 3.49
ATPAF1-213ENST00000574428 CCNB3Q8WWL7 1395 aa36.82■■■■□ 3.48
ATPAF1-213ENST00000574428 MAPKBP1O60336 1514 aa36.82■■■■□ 3.48
ATPAF1-213ENST00000574428 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.8■■■■□ 3.48
ATPAF1-213ENST00000574428 TTC37Q6PGP7 1564 aa36.8■■■■□ 3.48
ATPAF1-213ENST00000574428 RRBP1Q9P2E9 1410 aaKnown RBP36.79■■■■□ 3.48
ATPAF1-213ENST00000574428 FGD6Q6ZV73 1430 aa36.78■■■■□ 3.48
ATPAF1-213ENST00000574428 PCGF6Q9BYE7 350 aa36.75■■■■□ 3.47
ATPAF1-213ENST00000574428 GPATCH8Q9UKJ3 1502 aaKnown RBP36.75■■■■□ 3.47
ATPAF1-213ENST00000574428 ITSN2Q9NZM3 1697 aa36.73■■■■□ 3.47
ATPAF1-213ENST00000574428 CDC42BPAQ5VT25 1732 aa36.72■■■■□ 3.47
ATPAF1-213ENST00000574428 MIA2Q96PC5 1412 aa36.67■■■■□ 3.46
ATPAF1-213ENST00000574428 ABCA9Q8IUA7 1624 aa36.66■■■■□ 3.46
ATPAF1-213ENST00000574428 PTPN23Q9H3S7 1636 aa36.66■■■■□ 3.46
ATPAF1-213ENST00000574428 PREX2Q70Z35 1606 aa36.65■■■■□ 3.46
ATPAF1-213ENST00000574428 MYO5CQ9NQX4 1742 aa36.64■■■■□ 3.46
ATPAF1-213ENST00000574428 FAM50AQ14320 339 aaKnown RBP36.63■■■■□ 3.46
ATPAF1-213ENST00000574428 CFDP1Q9UEE9 299 aaPredicted RBP36.63■■■■□ 3.45
ATPAF1-213ENST00000574428 CDC42BPBQ9Y5S2 1711 aa36.6■■■■□ 3.45
ATPAF1-213ENST00000574428 TCOF1Q13428 1488 aaKnown RBP36.58■■■■□ 3.45
ATPAF1-213ENST00000574428 PLCH2O75038 1416 aa36.55■■■■□ 3.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms