RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 KIF27Q86VH2 1401 aa37.03■■■■□ 3.52
VPS53-216ENST00000574029 CUL7Q14999 1698 aa37■■■■□ 3.51
VPS53-216ENST00000574029 KIF13AQ9H1H9 1805 aa36.96■■■■□ 3.51
VPS53-216ENST00000574029 KIAA0586Q9BVV6 1533 aa36.95■■■■□ 3.51
VPS53-216ENST00000574029 ADCY10Q96PN6 1610 aa36.82■■■■□ 3.49
VPS53-216ENST00000574029 MAPKBP1O60336 1514 aa36.8■■■■□ 3.48
VPS53-216ENST00000574029 NPM1P06748 294 aaKnown RBP eCLIP36.78■■■■□ 3.48
VPS53-216ENST00000574029 CARMIL1Q5VZK9 1371 aa36.78■■■■□ 3.48
VPS53-216ENST00000574029 ABCC10Q5T3U5 1492 aa36.76■■■■□ 3.48
VPS53-216ENST00000574029 AEBP2Q6ZN18 517 aaPredicted RBP36.75■■■■□ 3.47
VPS53-216ENST00000574029 FAM69CQ0P6D2 419 aa36.69■■■■□ 3.46
VPS53-216ENST00000574029 DIP2BQ9P265 1576 aa36.68■■■■□ 3.46
VPS53-216ENST00000574029 PTPRGP23470 1445 aa36.6■■■■□ 3.45
VPS53-216ENST00000574029 IQGAP2Q13576 1575 aa36.59■■■■□ 3.45
VPS53-216ENST00000574029 CARMIL2Q6F5E8 1435 aa36.57■■■■□ 3.44
VPS53-216ENST00000574029 TNIKQ9UKE5 1360 aa36.54■■■■□ 3.44
VPS53-216ENST00000574029 ABCC2Q92887 1545 aa36.44■■■■□ 3.42
VPS53-216ENST00000574029 RAPGEF2Q9Y4G8 1499 aa36.44■■■■□ 3.42
VPS53-216ENST00000574029 TTBK1Q5TCY1 1321 aaPredicted RBP36.44■■■■□ 3.42
VPS53-216ENST00000574029 DISP1Q96F81 1524 aa36.43■■■■□ 3.42
VPS53-216ENST00000574029 TSPOAP1O95153 1857 aa36.4■■■■□ 3.42
VPS53-216ENST00000574029 UHRF1BP1LA0JNW5 1464 aa36.4■■■■□ 3.42
VPS53-216ENST00000574029 KDM6BO15054 1643 aa36.37■■■■□ 3.41
VPS53-216ENST00000574029 UGGT2Q9NYU1 1516 aa36.37■■■■□ 3.41
VPS53-216ENST00000574029 UACAQ9BZF9 1416 aa36.34■■■■□ 3.41
VPS53-216ENST00000574029 ASXL2Q76L83 1435 aa36.32■■■■□ 3.4
VPS53-216ENST00000574029 PLB1Q6P1J6 1458 aa36.31■■■■□ 3.4
VPS53-216ENST00000574029 GLI2P10070 1586 aa36.27■■■■□ 3.4
VPS53-216ENST00000574029 KIAA0556O60303 1618 aa36.26■■■■□ 3.4
VPS53-216ENST00000574029 KDM5BQ9UGL1 1544 aa36.23■■■■□ 3.39
VPS53-216ENST00000574029 PPRC1Q5VV67 1664 aaKnown RBP36.2■■■■□ 3.39
VPS53-216ENST00000574029 CTTNBP2Q8WZ74 1663 aa36.2■■■■□ 3.39
VPS53-216ENST00000574029 ZCCHC11Q5TAX3 1644 aaKnown RBP36.15■■■■□ 3.38
VPS53-216ENST00000574029 EPRSP07814 1512 aaKnown RBP36.11■■■■□ 3.37
VPS53-216ENST00000574029 MAP3K4Q9Y6R4 1608 aa36.08■■■■□ 3.37
VPS53-216ENST00000574029 PRXQ9BXM0 1461 aa36.06■■■■□ 3.36
VPS53-216ENST00000574029 GOLGA3Q08378 1498 aa36.05■■■■□ 3.36
VPS53-216ENST00000574029 KDM4FA0A1W2PPD8 638 aa36.03■■■■□ 3.36
VPS53-216ENST00000574029 WDR7Q9Y4E6 1490 aa35.96■■■■□ 3.35
VPS53-216ENST00000574029 ABCA8O94911 1581 aa35.95■■■■□ 3.35
VPS53-216ENST00000574029 TEX14Q8IWB6 1497 aa35.94■■■■□ 3.34
VPS53-216ENST00000574029 COL17A1Q9UMD9 1497 aaPredicted RBP35.92■■■■□ 3.34
VPS53-216ENST00000574029 CFAP43Q8NDM7 1665 aa35.79■■■■□ 3.32
VPS53-216ENST00000574029 MAGI3Q5TCQ9 1506 aa35.75■■■■□ 3.31
VPS53-216ENST00000574029 CD109Q6YHK3 1445 aa35.74■■■■□ 3.31
VPS53-216ENST00000574029 ADGRL1O94910 1474 aa35.73■■■■□ 3.31
VPS53-216ENST00000574029 CSRNP3Q8WYN3 585 aa35.72■■■■□ 3.31
VPS53-216ENST00000574029 KCNH8Q96L42 1107 aa35.72■■■■□ 3.31
VPS53-216ENST00000574029 SAMD9Q5K651 1589 aa35.68■■■■□ 3.3
VPS53-216ENST00000574029 P3H3Q8IVL6 736 aa35.66■■■■□ 3.3
VPS53-216ENST00000574029 FAM9AQ8IZU1 332 aaPredicted RBP35.66■■■■□ 3.3
VPS53-216ENST00000574029 ATP10BO94823 1461 aa35.64■■■■□ 3.3
VPS53-216ENST00000574029 EEA1Q15075 1411 aa35.57■■■■□ 3.29
VPS53-216ENST00000574029 ARID3CA6NKF2 412 aa35.55■■■■□ 3.28
VPS53-216ENST00000574029 RAPGEF6Q8TEU7 1601 aa35.54■■■■□ 3.28
VPS53-216ENST00000574029 ABCA9Q8IUA7 1624 aa35.5■■■■□ 3.27
VPS53-216ENST00000574029 ARAP3Q8WWN8 1544 aa35.48■■■■□ 3.27
VPS53-216ENST00000574029 NUP153P49790 1475 aaKnown RBP35.4■■■■□ 3.26
VPS53-216ENST00000574029 PHLDB1Q86UU1 1377 aa35.38■■■■□ 3.26
VPS53-216ENST00000574029 FHOD3Q2V2M9 1422 aa35.37■■■■□ 3.25
VPS53-216ENST00000574029 KIF21BO75037 1637 aa35.35■■■■□ 3.25
VPS53-216ENST00000574029 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.33■■■■□ 3.25
VPS53-216ENST00000574029 RANGAP1P46060 587 aaPredicted RBP35.33■■■■□ 3.25
VPS53-216ENST00000574029 HNRNPUL2Q1KMD3 747 aaKnown RBP35.33■■■■□ 3.25
VPS53-216ENST00000574029 NEO1Q92859 1461 aa35.3■■■■□ 3.24
VPS53-216ENST00000574029 HECW2Q9P2P5 1572 aa35.28■■■■□ 3.24
VPS53-216ENST00000574029 EFCAB5A4FU69 1503 aa35.27■■■■□ 3.24
VPS53-216ENST00000574029 RAPGEF3O95398 923 aa35.2■■■■□ 3.23
VPS53-216ENST00000574029 FRMPD1Q5SYB0 1578 aa35.18■■■■□ 3.22
VPS53-216ENST00000574029 PLEKHD1A6NEE1 506 aa35.18■■■■□ 3.22
VPS53-216ENST00000574029 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.11■■■■□ 3.21
VPS53-216ENST00000574029 ADAMTSL3P82987 1691 aa35.11■■■■□ 3.21
VPS53-216ENST00000574029 CFAP74Q9C0B2 1584 aa35.06■■■■□ 3.2
VPS53-216ENST00000574029 RICTORQ6R327 1708 aa35.05■■■■□ 3.2
VPS53-216ENST00000574029 TTC37Q6PGP7 1564 aa35.04■■■■□ 3.2
VPS53-216ENST00000574029 AKNAQ7Z591 1439 aa35.04■■■■□ 3.2
VPS53-216ENST00000574029 FANCAO15360 1455 aa35.03■■■■□ 3.2
VPS53-216ENST00000574029 DENND4BO75064 1496 aaPredicted RBP35.03■■■■□ 3.2
VPS53-216ENST00000574029 CDK13Q14004 1512 aaKnown RBP35.03■■■■□ 3.2
VPS53-216ENST00000574029 BCORL1Q5H9F3 1711 aa35.01■■■■□ 3.2
VPS53-216ENST00000574029 ILDR1Q86SU0 546 aaPredicted RBP35■■■■□ 3.19
VPS53-216ENST00000574029 PTPRMP28827 1452 aa35■■■■□ 3.19
VPS53-216ENST00000574029 UBTFP17480 764 aaKnown RBP34.99■■■■□ 3.19
VPS53-216ENST00000574029 ARHGEF40Q8TER5 1519 aa34.99■■■■□ 3.19
VPS53-216ENST00000574029 CHIC1Q5VXU3 224 aa34.96■■■■□ 3.19
VPS53-216ENST00000574029 FMN1Q68DA7 1419 aa34.95■■■■□ 3.19
VPS53-216ENST00000574029 ARHGAP35Q9NRY4 1499 aa34.94■■■■□ 3.18
VPS53-216ENST00000574029 EHMT2Q96KQ7 1210 aa34.93■■■■□ 3.18
VPS53-216ENST00000574029 HECW1Q76N89 1606 aa34.92■■■■□ 3.18
VPS53-216ENST00000574029 MADDQ8WXG6 1647 aa34.92■■■■□ 3.18
VPS53-216ENST00000574029 ZMYM4Q5VZL5 1548 aa34.91■■■■□ 3.18
VPS53-216ENST00000574029 ARID4BQ4LE39 1312 aaPredicted RBP34.91■■■■□ 3.18
VPS53-216ENST00000574029 PLCH2O75038 1416 aa34.88■■■■□ 3.17
VPS53-216ENST00000574029 MAGI2Q86UL8 1455 aa34.83■■■■□ 3.17
VPS53-216ENST00000574029 ZFYVE16Q7Z3T8 1539 aa34.82■■■■□ 3.16
VPS53-216ENST00000574029 ATP1B4Q9UN42 357 aaPredicted RBP34.82■■■■□ 3.16
VPS53-216ENST00000574029 YEATS2Q9ULM3 1422 aa34.8■■■■□ 3.16
VPS53-216ENST00000574029 MYO5CQ9NQX4 1742 aa34.79■■■■□ 3.16
VPS53-216ENST00000574029 SCAPERQ9BY12 1400 aa34.79■■■■□ 3.16
VPS53-216ENST00000574029 RIMS1Q86UR5 1692 aaKnown RBP34.79■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms