RNA–Protein interactions for RNA: ENST00000570475.5

USP43-202, Transcript of ubiquitin specific peptidase 43, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP43, Length 3,500 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-202ENST00000570475 PRXQ9BXM0 1461 aa21.53■■□□□ 1.04
USP43-202ENST00000570475 HNRNPUQ00839 825 aaKnown RBP eCLIP21.52■■□□□ 1.04
USP43-202ENST00000570475 SETD5Q9C0A6 1442 aa21.51■■□□□ 1.03
USP43-202ENST00000570475 RRP7BPQ9NSQ0 103 aa21.51■■□□□ 1.03
USP43-202ENST00000570475 ARHGAP35Q9NRY4 1499 aa21.49■■□□□ 1.03
USP43-202ENST00000570475 SENP3-EIF4A1A0A087X0R7 540 aa21.48■■□□□ 1.03
USP43-202ENST00000570475 TOP2BQ02880 1626 aa21.48■■□□□ 1.03
USP43-202ENST00000570475 IGF1RP08069 1367 aa21.46■■□□□ 1.03
USP43-202ENST00000570475 ERICH6Q7L0X2 663 aa21.46■■□□□ 1.03
USP43-202ENST00000570475 CUX1P39880 1505 aa21.46■■□□□ 1.03
USP43-202ENST00000570475 PHLDB1Q86UU1 1377 aa21.46■■□□□ 1.03
USP43-202ENST00000570475 MTUS2Q5JR59 1369 aa21.44■■□□□ 1.02
USP43-202ENST00000570475 FHOD3Q2V2M9 1422 aa21.43■■□□□ 1.02
USP43-202ENST00000570475 RRBP1Q9P2E9 1410 aaKnown RBP21.42■■□□□ 1.02
USP43-202ENST00000570475 ZNF326Q5BKZ1 582 aaKnown RBP21.41■■□□□ 1.02
USP43-202ENST00000570475 PPP1R15AO75807 674 aaPredicted RBP21.39■■□□□ 1.02
USP43-202ENST00000570475 FAM9BQ8IZU0 186 aa21.39■■□□□ 1.01
USP43-202ENST00000570475 PEG3Q9GZU2 1588 aa21.38■■□□□ 1.01
USP43-202ENST00000570475 ERICH3Q5RHP9 1530 aa21.35■■□□□ 1.01
USP43-202ENST00000570475 FOXD1Q16676 465 aa21.34■■□□□ 1.01
USP43-202ENST00000570475 ANP32EQ9BTT0 268 aa21.31■■□□□ 1
USP43-202ENST00000570475 FHAD1B1AJZ9 1412 aa21.28■■□□□ 1
USP43-202ENST00000570475 CADPSQ9ULU8 1353 aa21.27■■□□□ 1
USP43-202ENST00000570475 WDR97A6NE52 1622 aa21.27■■□□□ 1
USP43-202ENST00000570475 NCAPD3P42695 1498 aa21.26■□□□□ 0.99
USP43-202ENST00000570475 RBM19Q9Y4C8 960 aaKnown RBP21.26■□□□□ 0.99
USP43-202ENST00000570475 FGD5Q6ZNL6 1462 aa21.26■□□□□ 0.99
USP43-202ENST00000570475 TDRD9Q8NDG6 1382 aaKnown RBP21.25■□□□□ 0.99
USP43-202ENST00000570475 LRRC9Q6ZRR7 1453 aa21.25■□□□□ 0.99
USP43-202ENST00000570475 CDK11AQ9UQ88 783 aaPredicted RBP21.25■□□□□ 0.99
USP43-202ENST00000570475 RAD54L2Q9Y4B4 1467 aa21.24■□□□□ 0.99
USP43-202ENST00000570475 CFTRP13569 1480 aa21.23■□□□□ 0.99
USP43-202ENST00000570475 ZNF777Q9ULD5 760 aaPredicted RBP21.21■□□□□ 0.99
USP43-202ENST00000570475 MRS2Q9HD23 443 aa21.19■□□□□ 0.98
USP43-202ENST00000570475 HSPA5P11021 654 aaKnown RBP21.19■□□□□ 0.98
USP43-202ENST00000570475 EIF4G2P78344 907 aaKnown RBP eCLIP21.16■□□□□ 0.98
USP43-202ENST00000570475 CCER2I3L3R5 266 aa21.16■□□□□ 0.98
USP43-202ENST00000570475 BIVM-ERCC5R4GMW8 1640 aa21.15■□□□□ 0.98
USP43-202ENST00000570475 MAPKBP1O60336 1514 aa21.15■□□□□ 0.98
USP43-202ENST00000570475 TIAM1Q13009 1591 aa21.13■□□□□ 0.97
USP43-202ENST00000570475 FBLN2P98095 1184 aa21.13■□□□□ 0.97
USP43-202ENST00000570475 TIMELESSQ9UNS1 1208 aa21.13■□□□□ 0.97
USP43-202ENST00000570475 B4GALNT3Q6L9W6 998 aa21.09■□□□□ 0.97
USP43-202ENST00000570475 SALL2Q9Y467 1007 aaPredicted RBP21.09■□□□□ 0.97
USP43-202ENST00000570475 FANCD2Q9BXW9 1451 aa21.07■□□□□ 0.96
USP43-202ENST00000570475 SLC4A1APQ9BWU0 796 aaKnown RBP21.07■□□□□ 0.96
USP43-202ENST00000570475 L3MBTL2Q969R5 705 aa21.05■□□□□ 0.96
USP43-202ENST00000570475 CCDC18Q5T9S5 1454 aa21.05■□□□□ 0.96
USP43-202ENST00000570475 CCDC184Q52MB2 194 aa21.05■□□□□ 0.96
USP43-202ENST00000570475 FGD6Q6ZV73 1430 aa21.02■□□□□ 0.96
USP43-202ENST00000570475 NESP48681 1621 aa21.02■□□□□ 0.96
USP43-202ENST00000570475 MPHOSPH9Q99550 1183 aa21.01■□□□□ 0.95
USP43-202ENST00000570475 HMGXB3Q12766 1538 aa21.01■□□□□ 0.95
USP43-202ENST00000570475 KDM2AQ9Y2K7 1162 aa21■□□□□ 0.95
USP43-202ENST00000570475 PCF11O94913 1555 aaKnown RBP20.99■□□□□ 0.95
USP43-202ENST00000570475 FMN1Q68DA7 1419 aa20.98■□□□□ 0.95
USP43-202ENST00000570475 WASHC2AQ641Q2 1341 aa20.98■□□□□ 0.95
USP43-202ENST00000570475 DNAJC5BQ9UF47 199 aa20.96■□□□□ 0.95
USP43-202ENST00000570475 NBR1Q14596 966 aa20.92■□□□□ 0.94
USP43-202ENST00000570475 PTPRKQ15262 1439 aa20.92■□□□□ 0.94
USP43-202ENST00000570475 CASKIN1Q8WXD9 1431 aa20.91■□□□□ 0.94
USP43-202ENST00000570475 ZNF644Q9H582 1327 aaPredicted RBP20.91■□□□□ 0.94
USP43-202ENST00000570475 C11orf95C9JLR9 678 aaPredicted RBP20.89■□□□□ 0.94
USP43-202ENST00000570475 UACAQ9BZF9 1416 aa20.89■□□□□ 0.93
USP43-202ENST00000570475 POLA1P09884 1462 aaPredicted RBP20.87■□□□□ 0.93
USP43-202ENST00000570475 NCOA2Q15596 1464 aa20.87■□□□□ 0.93
USP43-202ENST00000570475 PPP4R2Q9NY27 417 aa20.87■□□□□ 0.93
USP43-202ENST00000570475 NPM2Q86SE8 214 aaKnown RBP20.86■□□□□ 0.93
USP43-202ENST00000570475 BCL11AQ9H165 835 aa20.86■□□□□ 0.93
USP43-202ENST00000570475 CCDC136Q96JN2 1154 aa20.86■□□□□ 0.93
USP43-202ENST00000570475 TMC1Q8TDI8 760 aa20.85■□□□□ 0.93
USP43-202ENST00000570475 PRKRIP1Q9H875 184 aaPredicted RBP20.85■□□□□ 0.93
USP43-202ENST00000570475 AQRO60306 1485 aaKnown RBP eCLIP20.84■□□□□ 0.93
USP43-202ENST00000570475 FYCO1Q9BQS8 1478 aa20.84■□□□□ 0.93
USP43-202ENST00000570475 MYOM3Q5VTT5 1437 aa20.83■□□□□ 0.93
USP43-202ENST00000570475 NAIPQ13075 1403 aa20.83■□□□□ 0.92
USP43-202ENST00000570475 NBPF8Q3BBV2 869 aa20.82■□□□□ 0.92
USP43-202ENST00000570475 CFDP1Q9UEE9 299 aaPredicted RBP20.82■□□□□ 0.92
USP43-202ENST00000570475 MSH5O43196 834 aa20.81■□□□□ 0.92
USP43-202ENST00000570475 TOPBP1Q92547 1522 aa20.8■□□□□ 0.92
USP43-202ENST00000570475 HFM1A2PYH4 1435 aa20.8■□□□□ 0.92
USP43-202ENST00000570475 MAP3K1Q13233 1512 aa20.77■□□□□ 0.92
USP43-202ENST00000570475 RGL3Q3MIN7 710 aa20.77■□□□□ 0.91
USP43-202ENST00000570475 GAPVD1Q14C86 1478 aa20.75■□□□□ 0.91
USP43-202ENST00000570475 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.75■□□□□ 0.91
USP43-202ENST00000570475 PKD2Q13563 968 aa20.74■□□□□ 0.91
USP43-202ENST00000570475 CC2D2AQ9P2K1 1620 aa20.73■□□□□ 0.91
USP43-202ENST00000570475 KIF7Q2M1P5 1343 aa20.72■□□□□ 0.91
USP43-202ENST00000570475 CARD11Q9BXL7 1154 aa20.72■□□□□ 0.91
USP43-202ENST00000570475 CCDC7Q96M83 1385 aa20.7■□□□□ 0.9
USP43-202ENST00000570475 CHMP7Q8WUX9 453 aaPredicted RBP20.7■□□□□ 0.9
USP43-202ENST00000570475 ABCA10Q8WWZ4 1543 aa20.68■□□□□ 0.9
USP43-202ENST00000570475 ANP32AP39687 249 aaKnown RBP20.66■□□□□ 0.9
USP43-202ENST00000570475 DCAF11Q8TEB1 546 aa20.66■□□□□ 0.9
USP43-202ENST00000570475 PDS5BQ9NTI5 1447 aa20.66■□□□□ 0.9
USP43-202ENST00000570475 EFCAB5A4FU69 1503 aa20.65■□□□□ 0.9
USP43-202ENST00000570475 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.64■□□□□ 0.9
USP43-202ENST00000570475 RTL5Q5HYW3 569 aaPredicted RBP20.64■□□□□ 0.9
USP43-202ENST00000570475 CNTLNQ9NXG0 1405 aa20.63■□□□□ 0.89
USP43-202ENST00000570475 PTPN23Q9H3S7 1636 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms