RNA–Protein interactions for RNA: ENST00000570475.5

USP43-202, Transcript of ubiquitin specific peptidase 43, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP43, Length 3,500 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-202ENST00000570475 NISCHQ9Y2I1 1504 aa29.5■■■□□ 2.31
USP43-202ENST00000570475 SHROOM4Q9ULL8 1493 aa26.86■■□□□ 1.89
USP43-202ENST00000570475 SUPT5HO00267 1087 aaKnown RBP26.64■■□□□ 1.86
USP43-202ENST00000570475 DCAF8L2P0C7V8 631 aa26.46■■□□□ 1.83
USP43-202ENST00000570475 PCGF6Q9BYE7 350 aa25.42■■□□□ 1.66
USP43-202ENST00000570475 CHIC1Q5VXU3 224 aa25.27■■□□□ 1.64
USP43-202ENST00000570475 EHMT2Q96KQ7 1210 aa25.12■■□□□ 1.61
USP43-202ENST00000570475 LOC105371045A0A1W2PR82 267 aa25.04■■□□□ 1.6
USP43-202ENST00000570475 HRCP23327 699 aa25.01■■□□□ 1.59
USP43-202ENST00000570475 PPARGC1BQ86YN6 1023 aaKnown RBP24.99■■□□□ 1.59
USP43-202ENST00000570475 MYO15BQ96JP2 1530 aa24.9■■□□□ 1.58
USP43-202ENST00000570475 FAM9AQ8IZU1 332 aaPredicted RBP24.85■■□□□ 1.57
USP43-202ENST00000570475 ZCCHC6Q5VYS8 1495 aaKnown RBP24.82■■□□□ 1.56
USP43-202ENST00000570475 TRIM41Q8WV44 630 aa24.46■■□□□ 1.51
USP43-202ENST00000570475 TRIM26Q12899 539 aaPredicted RBP24.35■■□□□ 1.49
USP43-202ENST00000570475 TTBK1Q5TCY1 1321 aaPredicted RBP24.28■■□□□ 1.48
USP43-202ENST00000570475 CCDC180Q9P1Z9 1646 aa24.28■■□□□ 1.48
USP43-202ENST00000570475 DCAF1Q9Y4B6 1507 aa23.96■■□□□ 1.43
USP43-202ENST00000570475 ZEB1P37275 1124 aaPredicted RBP23.86■■□□□ 1.41
USP43-202ENST00000570475 SCRIBQ14160 1630 aa23.83■■□□□ 1.41
USP43-202ENST00000570475 CCER1Q8TC90 406 aaPredicted RBP23.82■■□□□ 1.4
USP43-202ENST00000570475 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.8■■□□□ 1.4
USP43-202ENST00000570475 ABCC9O60706 1549 aa23.72■■□□□ 1.39
USP43-202ENST00000570475 RSF1Q96T23 1441 aaPredicted RBP23.72■■□□□ 1.39
USP43-202ENST00000570475 RANGAP1P46060 587 aaPredicted RBP23.6■■□□□ 1.37
USP43-202ENST00000570475 UBTFP17480 764 aaKnown RBP23.53■■□□□ 1.36
USP43-202ENST00000570475 RB1CC1Q8TDY2 1594 aa23.44■■□□□ 1.34
USP43-202ENST00000570475 CECR2Q9BXF3 1484 aa23.41■■□□□ 1.34
USP43-202ENST00000570475 SCAF1Q9H7N4 1312 aaKnown RBP23.38■■□□□ 1.33
USP43-202ENST00000570475 YTHDC1Q96MU7 727 aaKnown RBP23.36■■□□□ 1.33
USP43-202ENST00000570475 HNRNPUL2Q1KMD3 747 aaKnown RBP23.26■■□□□ 1.31
USP43-202ENST00000570475 DIEXFQ68CQ4 756 aaKnown RBP23.26■■□□□ 1.31
USP43-202ENST00000570475 PABPN1Q86U42 306 aaKnown RBP eCLIP23.23■■□□□ 1.31
USP43-202ENST00000570475 CENPBP07199 599 aaPredicted RBP23.16■■□□□ 1.3
USP43-202ENST00000570475 MROH2BQ7Z745 1585 aa23.16■■□□□ 1.3
USP43-202ENST00000570475 APLP2Q06481 763 aa23.14■■□□□ 1.29
USP43-202ENST00000570475 NEUROD1Q13562 356 aa23.12■■□□□ 1.29
USP43-202ENST00000570475 GTF3C3Q9Y5Q9 886 aa23.1■■□□□ 1.29
USP43-202ENST00000570475 ACIN1Q9UKV3 1341 aaKnown RBP23.04■■□□□ 1.28
USP43-202ENST00000570475 PELP1Q8IZL8 1130 aaKnown RBP23.04■■□□□ 1.28
USP43-202ENST00000570475 CSRNP3Q8WYN3 585 aa22.99■■□□□ 1.27
USP43-202ENST00000570475 WIZO95785 1651 aa22.99■■□□□ 1.27
USP43-202ENST00000570475 ABCC8Q09428 1581 aa22.89■■□□□ 1.26
USP43-202ENST00000570475 SOGA1O94964 1423 aa22.87■■□□□ 1.25
USP43-202ENST00000570475 CCDC88BA6NC98 1476 aa22.85■■□□□ 1.25
USP43-202ENST00000570475 CEP162Q5TB80 1403 aa22.84■■□□□ 1.25
USP43-202ENST00000570475 ZNF316A6NFI3 1004 aaPredicted RBP22.82■■□□□ 1.24
USP43-202ENST00000570475 ITGAEP38570 1179 aa22.81■■□□□ 1.24
USP43-202ENST00000570475 NACADO15069 1562 aa22.79■■□□□ 1.24
USP43-202ENST00000570475 RUSC2Q8N2Y8 1516 aa22.69■■□□□ 1.22
USP43-202ENST00000570475 MIER1Q8N108 512 aa22.68■■□□□ 1.22
USP43-202ENST00000570475 BAZ1AQ9NRL2 1556 aaPredicted RBP22.63■■□□□ 1.21
USP43-202ENST00000570475 ATP1B4Q9UN42 357 aaPredicted RBP22.61■■□□□ 1.21
USP43-202ENST00000570475 TNIKQ9UKE5 1360 aa22.59■■□□□ 1.21
USP43-202ENST00000570475 WRNQ14191 1432 aaPredicted RBP eCLIP22.47■■□□□ 1.19
USP43-202ENST00000570475 CLIP1P30622 1438 aa22.46■■□□□ 1.19
USP43-202ENST00000570475 GOLGA3Q08378 1498 aa22.44■■□□□ 1.18
USP43-202ENST00000570475 TOP2AP11388 1531 aaKnown RBP22.39■■□□□ 1.17
USP43-202ENST00000570475 SMARCA2P51531 1590 aa22.31■■□□□ 1.16
USP43-202ENST00000570475 EEA1Q15075 1411 aa22.31■■□□□ 1.16
USP43-202ENST00000570475 SMARCA4P51532 1647 aa22.3■■□□□ 1.16
USP43-202ENST00000570475 P3H3Q8IVL6 736 aa22.26■■□□□ 1.15
USP43-202ENST00000570475 BCANQ96GW7 911 aa22.23■■□□□ 1.15
USP43-202ENST00000570475 CEP164Q9UPV0 1460 aa22.23■■□□□ 1.15
USP43-202ENST00000570475 KANK4Q5T7N3 995 aaPredicted RBP22.23■■□□□ 1.15
USP43-202ENST00000570475 FAM50AQ14320 339 aaKnown RBP22.22■■□□□ 1.15
USP43-202ENST00000570475 RAPGEF2Q9Y4G8 1499 aa22.17■■□□□ 1.14
USP43-202ENST00000570475 HIRIP3Q9BW71 556 aaPredicted RBP22.14■■□□□ 1.13
USP43-202ENST00000570475 VPS8Q8N3P4 1428 aa22.13■■□□□ 1.13
USP43-202ENST00000570475 BAZ1BQ9UIG0 1483 aaKnown RBP22.1■■□□□ 1.13
USP43-202ENST00000570475 EIF4G1Q04637 1599 aaKnown RBP22.05■■□□□ 1.12
USP43-202ENST00000570475 DDX10Q13206 875 aaKnown RBP22.03■■□□□ 1.12
USP43-202ENST00000570475 SYNJ1O43426 1573 aa21.99■■□□□ 1.11
USP43-202ENST00000570475 KCNH8Q96L42 1107 aa21.98■■□□□ 1.11
USP43-202ENST00000570475 SIN3AQ96ST3 1273 aa21.95■■□□□ 1.1
USP43-202ENST00000570475 ATAD2BQ9ULI0 1458 aa21.92■■□□□ 1.1
USP43-202ENST00000570475 DHX57Q6P158 1386 aaKnown RBP21.9■■□□□ 1.1
USP43-202ENST00000570475 SUPT16HQ9Y5B9 1047 aaKnown RBP21.9■■□□□ 1.1
USP43-202ENST00000570475 CNGB1Q14028 1251 aaPredicted RBP21.89■■□□□ 1.09
USP43-202ENST00000570475 NEFLP07196 543 aa21.88■■□□□ 1.09
USP43-202ENST00000570475 TRIM52Q96A61 297 aa21.88■■□□□ 1.09
USP43-202ENST00000570475 MYT1Q01538 1121 aa21.86■■□□□ 1.09
USP43-202ENST00000570475 FKBP8Q14318 412 aa21.85■■□□□ 1.09
USP43-202ENST00000570475 KIF21BO75037 1637 aa21.84■■□□□ 1.09
USP43-202ENST00000570475 CCNB3Q8WWL7 1395 aa21.8■■□□□ 1.08
USP43-202ENST00000570475 ARID3CA6NKF2 412 aa21.8■■□□□ 1.08
USP43-202ENST00000570475 KIF27Q86VH2 1401 aa21.78■■□□□ 1.08
USP43-202ENST00000570475 UNC13AQ9UPW8 1703 aa21.75■■□□□ 1.07
USP43-202ENST00000570475 RAB3GAP2Q9H2M9 1393 aa21.71■■□□□ 1.07
USP43-202ENST00000570475 ANP32CO43423 234 aa21.71■■□□□ 1.07
USP43-202ENST00000570475 BICRAQ9NZM4 1560 aa21.71■■□□□ 1.07
USP43-202ENST00000570475 CLSPNQ9HAW4 1339 aa21.7■■□□□ 1.07
USP43-202ENST00000570475 ARAP1Q96P48 1450 aa21.7■■□□□ 1.06
USP43-202ENST00000570475 CUX2O14529 1486 aa21.65■■□□□ 1.06
USP43-202ENST00000570475 IRX6P78412 446 aaPredicted RBP21.64■■□□□ 1.05
USP43-202ENST00000570475 POLR3GLQ9BT43 218 aa21.63■■□□□ 1.05
USP43-202ENST00000570475 CHIC2Q9UKJ5 165 aa21.63■■□□□ 1.05
USP43-202ENST00000570475 CARMIL1Q5VZK9 1371 aa21.58■■□□□ 1.04
USP43-202ENST00000570475 TSHZ2Q9NRE2 1034 aa21.58■■□□□ 1.04
USP43-202ENST00000570475 TONSLQ96HA7 1378 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms