RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, human

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-225	ENST00000569063	RUSC2	Q8N2Y8	1516 aa		34.73	■■■■□ 3.15
CLK3-225	ENST00000569063	PRG4	Q92954	1404 aa	Predicted RBP	34.68	■■■■□ 3.14
CLK3-225	ENST00000569063	KIAA0586	Q9BVV6	1533 aa		34.65	■■■■□ 3.14
CLK3-225	ENST00000569063	TRH	P20396	242 aa	Predicted RBP	34.54	■■■■□ 3.12
CLK3-225	ENST00000569063	RAPGEF2	Q9Y4G8	1499 aa		34.49	■■■■□ 3.11
CLK3-225	ENST00000569063	IQGAP2	Q13576	1575 aa		34.37	■■■■□ 3.09
CLK3-225	ENST00000569063	CARMIL2	Q6F5E8	1435 aa		34.3	■■■■□ 3.08
CLK3-225	ENST00000569063	PRX	Q9BXM0	1461 aa		34.29	■■■■□ 3.08
CLK3-225	ENST00000569063	PTPRG	P23470	1445 aa		34.22	■■■■□ 3.07
CLK3-225	ENST00000569063	TNIK	Q9UKE5	1360 aa		34.22	■■■■□ 3.07
CLK3-225	ENST00000569063	UGGT2	Q9NYU1	1516 aa		34.2	■■■■□ 3.07
CLK3-225	ENST00000569063	DISP1	Q96F81	1524 aa		34.19	■■■■□ 3.06
CLK3-225	ENST00000569063	ADCY10	Q96PN6	1610 aa		34.19	■■■■□ 3.06
CLK3-225	ENST00000569063	CSRNP3	Q8WYN3	585 aa		34.17	■■■■□ 3.06
CLK3-225	ENST00000569063	NPM1	P06748	294 aa	Known RBP eCLIP	34.16	■■■■□ 3.06
CLK3-225	ENST00000569063	EEA1	Q15075	1411 aa		34.13	■■■■□ 3.05
CLK3-225	ENST00000569063	CTTNBP2	Q8WZ74	1663 aa		34.12	■■■■□ 3.05
CLK3-225	ENST00000569063	TTBK1	Q5TCY1	1321 aa	Predicted RBP	34.07	■■■■□ 3.05
CLK3-225	ENST00000569063	MAPKBP1	O60336	1514 aa		34.07	■■■■□ 3.04
CLK3-225	ENST00000569063	KIAA0556	O60303	1618 aa		34.05	■■■■□ 3.04
CLK3-225	ENST00000569063	CHIC1	Q5VXU3	224 aa		34.01	■■■■□ 3.03
CLK3-225	ENST00000569063	UHRF1BP1L	A0JNW5	1464 aa		33.99	■■■■□ 3.03
CLK3-225	ENST00000569063	UACA	Q9BZF9	1416 aa		33.98	■■■■□ 3.03
CLK3-225	ENST00000569063	GOLGA3	Q08378	1498 aa		33.98	■■■■□ 3.03
CLK3-225	ENST00000569063	ABCC10	Q5T3U5	1492 aa		33.97	■■■■□ 3.03
CLK3-225	ENST00000569063	ABCC2	Q92887	1545 aa		33.97	■■■■□ 3.03
CLK3-225	ENST00000569063	KIF13A	Q9H1H9	1805 aa		33.97	■■■■□ 3.03
CLK3-225	ENST00000569063	FAM69C	Q0P6D2	419 aa		33.9	■■■■□ 3.02
CLK3-225	ENST00000569063	FAM9A	Q8IZU1	332 aa	Predicted RBP	33.9	■■■■□ 3.02
CLK3-225	ENST00000569063	DIP2B	Q9P265	1576 aa		33.87	■■■■□ 3.01
CLK3-225	ENST00000569063	KDM5B	Q9UGL1	1544 aa		33.82	■■■■□ 3
CLK3-225	ENST00000569063	ASXL2	Q76L83	1435 aa		33.79	■■■■□ 3
CLK3-225	ENST00000569063	KIF21B	O75037	1637 aa		33.78	■■■■□ 3
CLK3-225	ENST00000569063	PLB1	Q6P1J6	1458 aa		33.77	■■■■□ 3
CLK3-225	ENST00000569063	ABCA8	O94911	1581 aa		33.72	■■■□□ 2.99
CLK3-225	ENST00000569063	SAMD9	Q5K651	1589 aa		33.71	■■■□□ 2.99
CLK3-225	ENST00000569063	ZCCHC11	Q5TAX3	1644 aa	Known RBP	33.71	■■■□□ 2.99
CLK3-225	ENST00000569063	P3H3	Q8IVL6	736 aa		33.69	■■■□□ 2.98
CLK3-225	ENST00000569063	GLI2	P10070	1586 aa		33.64	■■■□□ 2.98
CLK3-225	ENST00000569063	EPRS	P07814	1512 aa	Known RBP	33.58	■■■□□ 2.97
CLK3-225	ENST00000569063	RANGAP1	P46060	587 aa	Predicted RBP	33.56	■■■□□ 2.96
CLK3-225	ENST00000569063	WDR7	Q9Y4E6	1490 aa		33.55	■■■□□ 2.96
CLK3-225	ENST00000569063	TSPOAP1	O95153	1857 aa		33.54	■■■□□ 2.96
CLK3-225	ENST00000569063	UBTF	P17480	764 aa	Known RBP	33.5	■■■□□ 2.95
CLK3-225	ENST00000569063	EFCAB5	A4FU69	1503 aa		33.49	■■■□□ 2.95
CLK3-225	ENST00000569063	FHOD3	Q2V2M9	1422 aa		33.47	■■■□□ 2.95
CLK3-225	ENST00000569063	ATP10B	O94823	1461 aa		33.46	■■■□□ 2.95
CLK3-225	ENST00000569063	EHMT2	Q96KQ7	1210 aa		33.46	■■■□□ 2.95
CLK3-225	ENST00000569063	MAP3K4	Q9Y6R4	1608 aa		33.46	■■■□□ 2.95
CLK3-225	ENST00000569063	RAPGEF6	Q8TEU7	1601 aa		33.45	■■■□□ 2.95
CLK3-225	ENST00000569063	PPRC1	Q5VV67	1664 aa	Known RBP	33.45	■■■□□ 2.94
CLK3-225	ENST00000569063	KDM6B	O15054	1643 aa		33.42	■■■□□ 2.94
CLK3-225	ENST00000569063	ARID3C	A6NKF2	412 aa		33.39	■■■□□ 2.94
CLK3-225	ENST00000569063	KCNH8	Q96L42	1107 aa		33.38	■■■□□ 2.93
CLK3-225	ENST00000569063	NUP153	P49790	1475 aa	Known RBP	33.35	■■■□□ 2.93
CLK3-225	ENST00000569063	TEX14	Q8IWB6	1497 aa		33.34	■■■□□ 2.93
CLK3-225	ENST00000569063	CD109	Q6YHK3	1445 aa		33.29	■■■□□ 2.92
CLK3-225	ENST00000569063	CFAP43	Q8NDM7	1665 aa		33.29	■■■□□ 2.92
CLK3-225	ENST00000569063	ARHGAP35	Q9NRY4	1499 aa		33.27	■■■□□ 2.92
CLK3-225	ENST00000569063	MAGI3	Q5TCQ9	1506 aa		33.25	■■■□□ 2.91
CLK3-225	ENST00000569063	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	33.25	■■■□□ 2.91
CLK3-225	ENST00000569063	HNRNPUL2	Q1KMD3	747 aa	Known RBP	33.25	■■■□□ 2.91
CLK3-225	ENST00000569063	FMN1	Q68DA7	1419 aa		33.2	■■■□□ 2.91
CLK3-225	ENST00000569063	COL17A1	Q9UMD9	1497 aa	Predicted RBP	33.2	■■■□□ 2.91
CLK3-225	ENST00000569063	ABCA9	Q8IUA7	1624 aa		33.16	■■■□□ 2.9
CLK3-225	ENST00000569063	PLEKHD1	A6NEE1	506 aa		33.14	■■■□□ 2.9
CLK3-225	ENST00000569063	AEBP2	Q6ZN18	517 aa	Predicted RBP	33.07	■■■□□ 2.88
CLK3-225	ENST00000569063	HECW1	Q76N89	1606 aa		33.05	■■■□□ 2.88
CLK3-225	ENST00000569063	CDK13	Q14004	1512 aa	Known RBP	33.04	■■■□□ 2.88
CLK3-225	ENST00000569063	ATP1B4	Q9UN42	357 aa	Predicted RBP	33.02	■■■□□ 2.88
CLK3-225	ENST00000569063	PHLDB1	Q86UU1	1377 aa		33.01	■■■□□ 2.88
CLK3-225	ENST00000569063	ARAP3	Q8WWN8	1544 aa		32.99	■■■□□ 2.87
CLK3-225	ENST00000569063	NEO1	Q92859	1461 aa		32.94	■■■□□ 2.86
CLK3-225	ENST00000569063	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	32.94	■■■□□ 2.86	3e-12	■□□□□ 9.1
CLK3-225	ENST00000569063	CLIP1	P30622	1438 aa		32.94	■■■□□ 2.86
CLK3-225	ENST00000569063	CDK11A	Q9UQ88	783 aa	Predicted RBP	32.92	■■■□□ 2.86
CLK3-225	ENST00000569063	CASKIN1	Q8WXD9	1431 aa		32.9	■■■□□ 2.86
CLK3-225	ENST00000569063	KDM4F	A0A1W2PPD8	638 aa		32.88	■■■□□ 2.85
CLK3-225	ENST00000569063	TTC37	Q6PGP7	1564 aa		32.86	■■■□□ 2.85
CLK3-225	ENST00000569063	PCF11	O94913	1555 aa	Known RBP	32.84	■■■□□ 2.85
CLK3-225	ENST00000569063	LRRIQ1	Q96JM4	1722 aa		32.84	■■■□□ 2.85
CLK3-225	ENST00000569063	TRO	Q12816	1431 aa	Predicted RBP	32.8	■■■□□ 2.84
CLK3-225	ENST00000569063	FANCA	O15360	1455 aa		32.8	■■■□□ 2.84
CLK3-225	ENST00000569063	CCDC18	Q5T9S5	1454 aa		32.8	■■■□□ 2.84
CLK3-225	ENST00000569063	FYCO1	Q9BQS8	1478 aa		32.79	■■■□□ 2.84
CLK3-225	ENST00000569063	RAPGEF3	O95398	923 aa		32.78	■■■□□ 2.84
CLK3-225	ENST00000569063	AKNA	Q7Z591	1439 aa		32.77	■■■□□ 2.84
CLK3-225	ENST00000569063	CFAP74	Q9C0B2	1584 aa		32.77	■■■□□ 2.84
CLK3-225	ENST00000569063	PLCH2	O75038	1416 aa		32.77	■■■□□ 2.84
CLK3-225	ENST00000569063	ADGRL1	O94910	1474 aa		32.73	■■■□□ 2.83
CLK3-225	ENST00000569063	KIF14	Q15058	1648 aa		32.73	■■■□□ 2.83
CLK3-225	ENST00000569063	FRMPD1	Q5SYB0	1578 aa		32.7	■■■□□ 2.83
CLK3-225	ENST00000569063	CEP162	Q5TB80	1403 aa		32.69	■■■□□ 2.82
CLK3-225	ENST00000569063	DENND4B	O75064	1496 aa	Predicted RBP	32.69	■■■□□ 2.82
CLK3-225	ENST00000569063	MYO5C	Q9NQX4	1742 aa		32.65	■■■□□ 2.82
CLK3-225	ENST00000569063	EFCAB2	Q5VUJ9	269 aa		32.64	■■■□□ 2.82
CLK3-225	ENST00000569063	RICTOR	Q6R327	1708 aa		32.63	■■■□□ 2.81
CLK3-225	ENST00000569063	LOC105371045	A0A1W2PR82	267 aa		32.61	■■■□□ 2.81
CLK3-225	ENST00000569063	SCAPER	Q9BY12	1400 aa		32.58	■■■□□ 2.81
CLK3-225	ENST00000569063	ARHGAP5	Q13017	1502 aa		32.55	■■■□□ 2.8

Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms