RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 NISCHQ9Y2I1 1504 aa49.95■■■■■ 5.59
CLK3-225ENST00000569063 CCDC180Q9P1Z9 1646 aa44.54■■■■■ 4.72
CLK3-225ENST00000569063 ABCC9O60706 1549 aa43.93■■■■■ 4.62
CLK3-225ENST00000569063 RB1CC1Q8TDY2 1594 aa42.12■■■■■ 4.33
CLK3-225ENST00000569063 NACADO15069 1562 aa42■■■■■ 4.31
CLK3-225ENST00000569063 DCAF8L2P0C7V8 631 aa41.86■■■■■ 4.29
CLK3-225ENST00000569063 MYO15BQ96JP2 1530 aa41.66■■■■■ 4.26
CLK3-225ENST00000569063 ZCCHC6Q5VYS8 1495 aaKnown RBP41.53■■■■■ 4.24
CLK3-225ENST00000569063 DCAF1Q9Y4B6 1507 aa41.34■■■■■ 4.21
CLK3-225ENST00000569063 UNC13AQ9UPW8 1703 aa41.12■■■■■ 4.17
CLK3-225ENST00000569063 PABPN1Q86U42 306 aaKnown RBP eCLIP41.01■■■■■ 4.16
CLK3-225ENST00000569063 BICRAQ9NZM4 1560 aa40.86■■■■■ 4.13
CLK3-225ENST00000569063 DNAJC5BQ9UF47 199 aa40.71■■■■■ 4.11
CLK3-225ENST00000569063 SCRIBQ14160 1630 aa40.58■■■■■ 4.09
CLK3-225ENST00000569063 SHROOM4Q9ULL8 1493 aa40.43■■■■■ 4.06
CLK3-225ENST00000569063 EIF4G1Q04637 1599 aaKnown RBP39.81■■■■□ 3.96
CLK3-225ENST00000569063 CC2D2AQ9P2K1 1620 aa39.73■■■■□ 3.95
CLK3-225ENST00000569063 CECR2Q9BXF3 1484 aa39.53■■■■□ 3.92
CLK3-225ENST00000569063 SMARCA4P51532 1647 aa38.81■■■■□ 3.8
CLK3-225ENST00000569063 NCAPD3P42695 1498 aa38.79■■■■□ 3.8
CLK3-225ENST00000569063 BAZ1AQ9NRL2 1556 aaPredicted RBP38.74■■■■□ 3.79
CLK3-225ENST00000569063 ATAD2BQ9ULI0 1458 aa38.73■■■■□ 3.79
CLK3-225ENST00000569063 SMARCA2P51531 1590 aa38.65■■■■□ 3.78
CLK3-225ENST00000569063 HMGXB3Q12766 1538 aa38.53■■■■□ 3.76
CLK3-225ENST00000569063 MROH2BQ7Z745 1585 aa38.48■■■■□ 3.75
CLK3-225ENST00000569063 PEG3Q9GZU2 1588 aa38.48■■■■□ 3.75
CLK3-225ENST00000569063 BAZ1BQ9UIG0 1483 aaKnown RBP38.36■■■■□ 3.73
CLK3-225ENST00000569063 WIZO95785 1651 aa38.02■■■■□ 3.68
CLK3-225ENST00000569063 RSF1Q96T23 1441 aaPredicted RBP37.93■■■■□ 3.66
CLK3-225ENST00000569063 NESP48681 1621 aa37.91■■■■□ 3.66
CLK3-225ENST00000569063 ERCC6Q03468 1493 aa37.89■■■■□ 3.66
CLK3-225ENST00000569063 LAMC3Q9Y6N6 1575 aa37.79■■■■□ 3.64
CLK3-225ENST00000569063 CUX2O14529 1486 aa37.66■■■■□ 3.62
CLK3-225ENST00000569063 CADPSQ9ULU8 1353 aa37.63■■■■□ 3.61
CLK3-225ENST00000569063 TOP2AP11388 1531 aaKnown RBP37.61■■■■□ 3.61
CLK3-225ENST00000569063 PDS5BQ9NTI5 1447 aa37.56■■■■□ 3.6
CLK3-225ENST00000569063 KIF21AQ7Z4S6 1674 aa37.43■■■■□ 3.58
CLK3-225ENST00000569063 THOC2Q8NI27 1593 aaKnown RBP37.42■■■■□ 3.58
CLK3-225ENST00000569063 CFTRP13569 1480 aa37.33■■■■□ 3.57
CLK3-225ENST00000569063 CCDC88BA6NC98 1476 aa37.2■■■■□ 3.54
CLK3-225ENST00000569063 MRC2Q9UBG0 1479 aa37.18■■■■□ 3.54
CLK3-225ENST00000569063 FANCD2Q9BXW9 1451 aa37.17■■■■□ 3.54
CLK3-225ENST00000569063 CEP164Q9UPV0 1460 aa37.14■■■■□ 3.54
CLK3-225ENST00000569063 WDR62O43379 1518 aa37.07■■■■□ 3.53
CLK3-225ENST00000569063 DNAJC5Q9H3Z4 198 aa36.97■■■■□ 3.51
CLK3-225ENST00000569063 PRDM2Q13029 1718 aa36.93■■■■□ 3.5
CLK3-225ENST00000569063 URB2Q14146 1524 aaKnown RBP36.82■■■■□ 3.48
CLK3-225ENST00000569063 SUPT5HO00267 1087 aaKnown RBP36.65■■■■□ 3.46
CLK3-225ENST00000569063 ABCC8Q09428 1581 aa36.53■■■■□ 3.44
CLK3-225ENST00000569063 TOPBP1Q92547 1522 aa36.53■■■■□ 3.44
CLK3-225ENST00000569063 DNMBPQ6XZF7 1577 aa36.44■■■■□ 3.42
CLK3-225ENST00000569063 IFT140Q96RY7 1462 aa36.4■■■■□ 3.42
CLK3-225ENST00000569063 ZNF608Q9ULD9 1512 aaPredicted RBP36.26■■■■□ 3.4
CLK3-225ENST00000569063 POLA1P09884 1462 aaPredicted RBP36.19■■■■□ 3.38
CLK3-225ENST00000569063 TARBP1Q13395 1621 aaKnown RBP36.16■■■■□ 3.38
CLK3-225ENST00000569063 CUX1P39880 1505 aa36.12■■■■□ 3.37
CLK3-225ENST00000569063 EIF4G3O43432 1585 aaKnown RBP36.07■■■■□ 3.37
CLK3-225ENST00000569063 OSCARQ8IYS5 282 aa36.06■■■■□ 3.36
CLK3-225ENST00000569063 SOGA1O94964 1423 aa36.06■■■■□ 3.36
CLK3-225ENST00000569063 FGD5Q6ZNL6 1462 aa36.05■■■■□ 3.36
CLK3-225ENST00000569063 RAD54L2Q9Y4B4 1467 aa36.04■■■■□ 3.36
CLK3-225ENST00000569063 AQRO60306 1485 aaKnown RBP eCLIP36.01■■■■□ 3.369e-8■■■■■ 31.4
CLK3-225ENST00000569063 TDRD9Q8NDG6 1382 aaKnown RBP35.89■■■■□ 3.34
CLK3-225ENST00000569063 WDR97A6NE52 1622 aa35.86■■■■□ 3.33
CLK3-225ENST00000569063 WRNQ14191 1432 aaPredicted RBP eCLIP35.75■■■■□ 3.31
CLK3-225ENST00000569063 TOP2BQ02880 1626 aa35.71■■■■□ 3.31
CLK3-225ENST00000569063 ABCA10Q8WWZ4 1543 aa35.7■■■■□ 3.31
CLK3-225ENST00000569063 BIVM-ERCC5R4GMW8 1640 aa35.69■■■■□ 3.3
CLK3-225ENST00000569063 GRIN2BQ13224 1484 aa35.67■■■■□ 3.3
CLK3-225ENST00000569063 CHD1O14646 1710 aa35.66■■■■□ 3.3
CLK3-225ENST00000569063 SYNJ1O43426 1573 aa35.66■■■■□ 3.3
CLK3-225ENST00000569063 SNAPC4Q5SXM2 1469 aa35.66■■■■□ 3.3
CLK3-225ENST00000569063 FBLN2P98095 1184 aa35.64■■■■□ 3.3
CLK3-225ENST00000569063 GAPVD1Q14C86 1478 aa35.62■■■■□ 3.29
CLK3-225ENST00000569063 MAGI1Q96QZ7 1491 aaPredicted RBP35.61■■■■□ 3.29
CLK3-225ENST00000569063 ABCA5Q8WWZ7 1642 aa35.57■■■■□ 3.28
CLK3-225ENST00000569063 TRIM41Q8WV44 630 aa35.53■■■■□ 3.28
CLK3-225ENST00000569063 PBRM1Q86U86 1689 aa35.52■■■■□ 3.28
CLK3-225ENST00000569063 CHMP7Q8WUX9 453 aaPredicted RBP35.51■■■■□ 3.28
CLK3-225ENST00000569063 SYNJ2O15056 1496 aa35.48■■■■□ 3.27
CLK3-225ENST00000569063 RIMBP3CA6NJZ7 1639 aa35.46■■■■□ 3.27
CLK3-225ENST00000569063 RIMBP3BA6NNM3 1639 aa35.46■■■■□ 3.27
CLK3-225ENST00000569063 RIMBP3Q9UFD9 1639 aa35.46■■■■□ 3.27
CLK3-225ENST00000569063 ARHGEF11O15085 1522 aa35.43■■■■□ 3.26
CLK3-225ENST00000569063 CLASP1Q7Z460 1538 aa35.32■■■■□ 3.25
CLK3-225ENST00000569063 ERICH3Q5RHP9 1530 aa35.27■■■■□ 3.24
CLK3-225ENST00000569063 ADAMTS12P58397 1594 aa35.25■■■■□ 3.23
CLK3-225ENST00000569063 FHAD1B1AJZ9 1412 aa35.21■■■■□ 3.23
CLK3-225ENST00000569063 GRIN2AQ12879 1464 aa35.21■■■■□ 3.23
CLK3-225ENST00000569063 CYB5RLQ6IPT4 315 aa35.14■■■■□ 3.22
CLK3-225ENST00000569063 ARAP1Q96P48 1450 aa35.13■■■■□ 3.21
CLK3-225ENST00000569063 NUP160Q12769 1436 aa35.08■■■■□ 3.21
CLK3-225ENST00000569063 KIF27Q86VH2 1401 aa35.04■■■■□ 3.2
CLK3-225ENST00000569063 CEP170Q5SW79 1584 aa35.03■■■■□ 3.2
CLK3-225ENST00000569063 IGF1RP08069 1367 aa34.98■■■■□ 3.19
CLK3-225ENST00000569063 CUL7Q14999 1698 aa34.85■■■■□ 3.17
CLK3-225ENST00000569063 SHROOM2Q13796 1616 aa34.84■■■■□ 3.17
CLK3-225ENST00000569063 ERCC6L2Q5T890 1561 aa34.79■■■■□ 3.16
CLK3-225ENST00000569063 JPH4Q96JJ6 628 aa34.74■■■■□ 3.15
CLK3-225ENST00000569063 CARMIL1Q5VZK9 1371 aa34.74■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms