RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 KIF13AQ9H1H9 1805 aa31.24■■■□□ 2.59
CLK3-221ENST00000568139 IGF1RP08069 1367 aa31.11■■■□□ 2.57
CLK3-221ENST00000568139 KIAA0586Q9BVV6 1533 aa31.08■■■□□ 2.57
CLK3-221ENST00000568139 NPM1P06748 294 aaKnown RBP eCLIP31.06■■■□□ 2.56
CLK3-221ENST00000568139 ABCC10Q5T3U5 1492 aa31.06■■■□□ 2.56
CLK3-221ENST00000568139 KIF27Q86VH2 1401 aa31.06■■■□□ 2.56
CLK3-221ENST00000568139 MAPKBP1O60336 1514 aa31.05■■■□□ 2.56
CLK3-221ENST00000568139 CUL7Q14999 1698 aa31.04■■■□□ 2.56
CLK3-221ENST00000568139 ADCY10Q96PN6 1610 aa31.03■■■□□ 2.56
CLK3-221ENST00000568139 FAM69CQ0P6D2 419 aa31.03■■■□□ 2.56
CLK3-221ENST00000568139 DIP2BQ9P265 1576 aa30.96■■■□□ 2.55
CLK3-221ENST00000568139 CARMIL1Q5VZK9 1371 aa30.88■■■□□ 2.53
CLK3-221ENST00000568139 PTPRGP23470 1445 aa30.83■■■□□ 2.53
CLK3-221ENST00000568139 TNIKQ9UKE5 1360 aa30.77■■■□□ 2.52
CLK3-221ENST00000568139 TSPOAP1O95153 1857 aa30.76■■■□□ 2.52
CLK3-221ENST00000568139 CARMIL2Q6F5E8 1435 aa30.76■■■□□ 2.51
CLK3-221ENST00000568139 KDM6BO15054 1643 aa30.74■■■□□ 2.51
CLK3-221ENST00000568139 IQGAP2Q13576 1575 aa30.72■■■□□ 2.51
CLK3-221ENST00000568139 ABCC2Q92887 1545 aa30.71■■■□□ 2.51
CLK3-221ENST00000568139 TTBK1Q5TCY1 1321 aaPredicted RBP30.7■■■□□ 2.5
CLK3-221ENST00000568139 UHRF1BP1LA0JNW5 1464 aa30.64■■■□□ 2.5
CLK3-221ENST00000568139 ASXL2Q76L83 1435 aa30.62■■■□□ 2.49
CLK3-221ENST00000568139 PLB1Q6P1J6 1458 aa30.62■■■□□ 2.49
CLK3-221ENST00000568139 DISP1Q96F81 1524 aa30.62■■■□□ 2.49
CLK3-221ENST00000568139 GLI2P10070 1586 aa30.59■■■□□ 2.49
CLK3-221ENST00000568139 UACAQ9BZF9 1416 aa30.59■■■□□ 2.49
CLK3-221ENST00000568139 KDM4FA0A1W2PPD8 638 aa30.58■■■□□ 2.49
CLK3-221ENST00000568139 RAPGEF2Q9Y4G8 1499 aa30.57■■■□□ 2.48
CLK3-221ENST00000568139 PPRC1Q5VV67 1664 aaKnown RBP30.55■■■□□ 2.48
CLK3-221ENST00000568139 UGGT2Q9NYU1 1516 aa30.54■■■□□ 2.48
CLK3-221ENST00000568139 KDM5BQ9UGL1 1544 aa30.5■■■□□ 2.47
CLK3-221ENST00000568139 KIAA0556O60303 1618 aa30.45■■■□□ 2.47
CLK3-221ENST00000568139 EPRSP07814 1512 aaKnown RBP30.44■■■□□ 2.46
CLK3-221ENST00000568139 ZCCHC11Q5TAX3 1644 aaKnown RBP30.42■■■□□ 2.46
CLK3-221ENST00000568139 MAP3K4Q9Y6R4 1608 aa30.4■■■□□ 2.46
CLK3-221ENST00000568139 COL17A1Q9UMD9 1497 aaPredicted RBP30.36■■■□□ 2.45
CLK3-221ENST00000568139 CTTNBP2Q8WZ74 1663 aa30.33■■■□□ 2.45
CLK3-221ENST00000568139 TEX14Q8IWB6 1497 aa30.32■■■□□ 2.44
CLK3-221ENST00000568139 WDR7Q9Y4E6 1490 aa30.27■■■□□ 2.44
CLK3-221ENST00000568139 GOLGA3Q08378 1498 aa30.25■■■□□ 2.43
CLK3-221ENST00000568139 ADGRL1O94910 1474 aa30.25■■■□□ 2.43
CLK3-221ENST00000568139 ABCA8O94911 1581 aa30.21■■■□□ 2.43
CLK3-221ENST00000568139 PRXQ9BXM0 1461 aa30.2■■■□□ 2.43
CLK3-221ENST00000568139 CFAP43Q8NDM7 1665 aa30.14■■■□□ 2.41
CLK3-221ENST00000568139 MAGI3Q5TCQ9 1506 aa30.13■■■□□ 2.41
CLK3-221ENST00000568139 CD109Q6YHK3 1445 aa30.13■■■□□ 2.41
CLK3-221ENST00000568139 KCNH8Q96L42 1107 aa30.1■■■□□ 2.41
CLK3-221ENST00000568139 FAM9AQ8IZU1 332 aaPredicted RBP29.97■■■□□ 2.39
CLK3-221ENST00000568139 ATP10BO94823 1461 aa29.96■■■□□ 2.39
CLK3-221ENST00000568139 P3H3Q8IVL6 736 aa29.95■■■□□ 2.39
CLK3-221ENST00000568139 HECW2Q9P2P5 1572 aa29.92■■■□□ 2.38
CLK3-221ENST00000568139 ARAP3Q8WWN8 1544 aa29.91■■■□□ 2.38
CLK3-221ENST00000568139 ARID3CA6NKF2 412 aa29.9■■■□□ 2.38
CLK3-221ENST00000568139 ILDR1Q86SU0 546 aaPredicted RBP29.89■■■□□ 2.38
CLK3-221ENST00000568139 CSRNP3Q8WYN3 585 aa29.89■■■□□ 2.38
CLK3-221ENST00000568139 SAMD9Q5K651 1589 aa29.89■■■□□ 2.38
CLK3-221ENST00000568139 ABCA9Q8IUA7 1624 aa29.86■■■□□ 2.37
CLK3-221ENST00000568139 KIF21BO75037 1637 aa29.84■■■□□ 2.37
CLK3-221ENST00000568139 PHLDB1Q86UU1 1377 aa29.83■■■□□ 2.37
CLK3-221ENST00000568139 RAPGEF6Q8TEU7 1601 aa29.82■■■□□ 2.36
CLK3-221ENST00000568139 NEO1Q92859 1461 aa29.73■■■□□ 2.35
CLK3-221ENST00000568139 EEA1Q15075 1411 aa29.71■■■□□ 2.35
CLK3-221ENST00000568139 NUP153P49790 1475 aaKnown RBP29.71■■■□□ 2.35
CLK3-221ENST00000568139 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.7■■■□□ 2.35
CLK3-221ENST00000568139 RAPGEF3O95398 923 aa29.7■■■□□ 2.35
CLK3-221ENST00000568139 HNRNPUL2Q1KMD3 747 aaKnown RBP29.7■■■□□ 2.35
CLK3-221ENST00000568139 ADAMTSL3P82987 1691 aa29.66■■■□□ 2.34
CLK3-221ENST00000568139 FHOD3Q2V2M9 1422 aa29.65■■■□□ 2.34
CLK3-221ENST00000568139 FRMPD1Q5SYB0 1578 aa29.63■■■□□ 2.33
CLK3-221ENST00000568139 RANGAP1P46060 587 aaPredicted RBP29.62■■■□□ 2.33
CLK3-221ENST00000568139 PTPRMP28827 1452 aa29.6■■■□□ 2.33
CLK3-221ENST00000568139 PLEKHD1A6NEE1 506 aa29.59■■■□□ 2.33
CLK3-221ENST00000568139 BCORL1Q5H9F3 1711 aa29.56■■■□□ 2.32
CLK3-221ENST00000568139 EFCAB5A4FU69 1503 aa29.52■■■□□ 2.32
CLK3-221ENST00000568139 DENND4BO75064 1496 aaPredicted RBP29.51■■■□□ 2.31
CLK3-221ENST00000568139 RICTORQ6R327 1708 aa29.51■■■□□ 2.31
CLK3-221ENST00000568139 AKNAQ7Z591 1439 aa29.5■■■□□ 2.31
CLK3-221ENST00000568139 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.5■■■□□ 2.313e-12■□□□□ 9.1
CLK3-221ENST00000568139 ARID4BQ4LE39 1312 aaPredicted RBP29.48■■■□□ 2.31
CLK3-221ENST00000568139 FANCAO15360 1455 aa29.48■■■□□ 2.31
CLK3-221ENST00000568139 CFAP74Q9C0B2 1584 aa29.47■■■□□ 2.31
CLK3-221ENST00000568139 ARHGEF40Q8TER5 1519 aa29.47■■■□□ 2.31
CLK3-221ENST00000568139 MADDQ8WXG6 1647 aa29.47■■■□□ 2.31
CLK3-221ENST00000568139 TTC37Q6PGP7 1564 aa29.43■■■□□ 2.3
CLK3-221ENST00000568139 ZMYM4Q5VZL5 1548 aa29.39■■■□□ 2.3
CLK3-221ENST00000568139 CDK13Q14004 1512 aaKnown RBP29.38■■■□□ 2.29
CLK3-221ENST00000568139 PCF11O94913 1555 aaKnown RBP29.37■■■□□ 2.29
CLK3-221ENST00000568139 RIMS1Q86UR5 1692 aaKnown RBP29.36■■■□□ 2.29
CLK3-221ENST00000568139 LMTK3Q96Q04 1460 aa29.34■■■□□ 2.29
CLK3-221ENST00000568139 FBXO41Q8TF61 875 aa29.33■■■□□ 2.29
CLK3-221ENST00000568139 MAGI2Q86UL8 1455 aa29.33■■■□□ 2.29
CLK3-221ENST00000568139 ZFYVE16Q7Z3T8 1539 aa29.32■■■□□ 2.28
CLK3-221ENST00000568139 PLCH2O75038 1416 aa29.32■■■□□ 2.28
CLK3-221ENST00000568139 POGZQ7Z3K3 1410 aa29.31■■■□□ 2.28
CLK3-221ENST00000568139 YEATS2Q9ULM3 1422 aa29.31■■■□□ 2.28
CLK3-221ENST00000568139 SIGLEC1Q9BZZ2 1709 aa29.31■■■□□ 2.28
CLK3-221ENST00000568139 HECW1Q76N89 1606 aa29.29■■■□□ 2.28
CLK3-221ENST00000568139 FMN1Q68DA7 1419 aa29.27■■■□□ 2.28
CLK3-221ENST00000568139 SCAPERQ9BY12 1400 aa29.27■■■□□ 2.28
CLK3-221ENST00000568139 UBTFP17480 764 aaKnown RBP29.26■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms