RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 RAB3GAP2Q9H2M9 1393 aa16.1■□□□□ 0.17
CDH1-210ENST00000566612 BICRAQ9NZM4 1560 aa16.1■□□□□ 0.17
CDH1-210ENST00000566612 HNRNPUQ00839 825 aaKnown RBP eCLIP16.1■□□□□ 0.17
CDH1-210ENST00000566612 IGF1RP08069 1367 aa16.08■□□□□ 0.16
CDH1-210ENST00000566612 NCAPD3P42695 1498 aa16.07■□□□□ 0.16
CDH1-210ENST00000566612 FHOD3Q2V2M9 1422 aa16.07■□□□□ 0.16
CDH1-210ENST00000566612 FAM9BQ8IZU0 186 aa16.06■□□□□ 0.16
CDH1-210ENST00000566612 SETD5Q9C0A6 1442 aa16.06■□□□□ 0.16
CDH1-210ENST00000566612 KIF21BO75037 1637 aa16.05■□□□□ 0.16
CDH1-210ENST00000566612 SLC4A1APQ9BWU0 796 aaKnown RBP16.05■□□□□ 0.16
CDH1-210ENST00000566612 DHX57Q6P158 1386 aaKnown RBP16.05■□□□□ 0.16
CDH1-210ENST00000566612 EIF4G1Q04637 1599 aaKnown RBP16.04■□□□□ 0.16
CDH1-210ENST00000566612 KDM2AQ9Y2K7 1162 aa16.01■□□□□ 0.15
CDH1-210ENST00000566612 FANCD2Q9BXW9 1451 aa16■□□□□ 0.15
CDH1-210ENST00000566612 EIF4G2P78344 907 aaKnown RBP eCLIP15.99■□□□□ 0.15
CDH1-210ENST00000566612 MYT1Q01538 1121 aa15.99■□□□□ 0.15
CDH1-210ENST00000566612 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.99■□□□□ 0.15
CDH1-210ENST00000566612 FGD5Q6ZNL6 1462 aa15.98■□□□□ 0.15
CDH1-210ENST00000566612 ARHGAP35Q9NRY4 1499 aa15.98■□□□□ 0.15
CDH1-210ENST00000566612 ARAP1Q96P48 1450 aa15.97■□□□□ 0.15
CDH1-210ENST00000566612 TSPY4P0CV99 314 aa15.97■□□□□ 0.15
CDH1-210ENST00000566612 TSPY10P0CW01 314 aa15.97■□□□□ 0.15
CDH1-210ENST00000566612 CFDP1Q9UEE9 299 aaPredicted RBP15.97■□□□□ 0.15
CDH1-210ENST00000566612 RAD54L2Q9Y4B4 1467 aa15.97■□□□□ 0.15
CDH1-210ENST00000566612 IRX6P78412 446 aaPredicted RBP15.97■□□□□ 0.15
CDH1-210ENST00000566612 FOXD1Q16676 465 aa15.96■□□□□ 0.15
CDH1-210ENST00000566612 SENP3-EIF4A1A0A087X0R7 540 aa15.94■□□□□ 0.14
CDH1-210ENST00000566612 CFTRP13569 1480 aa15.94■□□□□ 0.14
CDH1-210ENST00000566612 UNC13AQ9UPW8 1703 aa15.94■□□□□ 0.14
CDH1-210ENST00000566612 MRS2Q9HD23 443 aa15.94■□□□□ 0.14
CDH1-210ENST00000566612 PDS5BQ9NTI5 1447 aa15.94■□□□□ 0.14
CDH1-210ENST00000566612 PLEKHD1A6NEE1 506 aa15.93■□□□□ 0.14
CDH1-210ENST00000566612 PRXQ9BXM0 1461 aa15.92■□□□□ 0.14
CDH1-210ENST00000566612 CUX1P39880 1505 aa15.91■□□□□ 0.14
CDH1-210ENST00000566612 KCNH8Q96L42 1107 aa15.91■□□□□ 0.14
CDH1-210ENST00000566612 FMN1Q68DA7 1419 aa15.91■□□□□ 0.14
CDH1-210ENST00000566612 SALL2Q9Y467 1007 aaPredicted RBP15.9■□□□□ 0.14
CDH1-210ENST00000566612 TOP2BQ02880 1626 aa15.9■□□□□ 0.14
CDH1-210ENST00000566612 PPP1R15AO75807 674 aaPredicted RBP15.89■□□□□ 0.13
CDH1-210ENST00000566612 SUPT16HQ9Y5B9 1047 aaKnown RBP15.87■□□□□ 0.13
CDH1-210ENST00000566612 PHLDB1Q86UU1 1377 aa15.87■□□□□ 0.13
CDH1-210ENST00000566612 TIMELESSQ9UNS1 1208 aa15.87■□□□□ 0.13
CDH1-210ENST00000566612 RGL3Q3MIN7 710 aa15.85■□□□□ 0.13
CDH1-210ENST00000566612 ERCC6Q03468 1493 aa15.85■□□□□ 0.13
CDH1-210ENST00000566612 NESP48681 1621 aa15.83■□□□□ 0.13
CDH1-210ENST00000566612 ERICH3Q5RHP9 1530 aa15.83■□□□□ 0.12
CDH1-210ENST00000566612 TMC1Q8TDI8 760 aa15.83■□□□□ 0.12
CDH1-210ENST00000566612 HSPA5P11021 654 aaKnown RBP15.81■□□□□ 0.12
CDH1-210ENST00000566612 PEG3Q9GZU2 1588 aa15.81■□□□□ 0.12
CDH1-210ENST00000566612 MPHOSPH9Q99550 1183 aa15.8■□□□□ 0.12
CDH1-210ENST00000566612 HMGXB3Q12766 1538 aa15.79■□□□□ 0.12
CDH1-210ENST00000566612 DNAJC5BQ9UF47 199 aa15.79■□□□□ 0.12
CDH1-210ENST00000566612 LRRC9Q6ZRR7 1453 aa15.77■□□□□ 0.11
CDH1-210ENST00000566612 CHGAP10645 457 aaKnown RBP15.75■□□□□ 0.11
CDH1-210ENST00000566612 L3MBTL2Q969R5 705 aa15.75■□□□□ 0.11
CDH1-210ENST00000566612 GAPVD1Q14C86 1478 aa15.74■□□□□ 0.11
CDH1-210ENST00000566612 RRBP1Q9P2E9 1410 aaKnown RBP15.74■□□□□ 0.11
CDH1-210ENST00000566612 CARD11Q9BXL7 1154 aa15.74■□□□□ 0.11
CDH1-210ENST00000566612 PKD2Q13563 968 aa15.72■□□□□ 0.11
CDH1-210ENST00000566612 CC2D2AQ9P2K1 1620 aa15.7■□□□□ 0.1
CDH1-210ENST00000566612 DAXXQ9UER7 740 aaPredicted RBP15.7■□□□□ 0.1
CDH1-210ENST00000566612 CCER2I3L3R5 266 aa15.7■□□□□ 0.1
CDH1-210ENST00000566612 AQRO60306 1485 aaKnown RBP eCLIP15.69■□□□□ 0.1
CDH1-210ENST00000566612 DCAF11Q8TEB1 546 aa15.68■□□□□ 0.1
CDH1-210ENST00000566612 POLA1P09884 1462 aaPredicted RBP15.68■□□□□ 0.1
CDH1-210ENST00000566612 FGD6Q6ZV73 1430 aa15.68■□□□□ 0.1
CDH1-210ENST00000566612 ZNF644Q9H582 1327 aaPredicted RBP15.67■□□□□ 0.1
CDH1-210ENST00000566612 JPH4Q96JJ6 628 aa15.66■□□□□ 0.1
CDH1-210ENST00000566612 CCDC18Q5T9S5 1454 aa15.66■□□□□ 0.1
CDH1-210ENST00000566612 TOPBP1Q92547 1522 aa15.66■□□□□ 0.1
CDH1-210ENST00000566612 SENP3Q9H4L4 574 aaPredicted RBP15.65■□□□□ 0.1
CDH1-210ENST00000566612 CCDC136Q96JN2 1154 aa15.65■□□□□ 0.1
CDH1-210ENST00000566612 CASKIN1Q8WXD9 1431 aa15.64■□□□□ 0.09
CDH1-210ENST00000566612 HNRNPMP52272 730 aaKnown RBP eCLIP15.62■□□□□ 0.09
CDH1-210ENST00000566612 NPM1P06748 294 aaKnown RBP eCLIP15.62■□□□□ 0.09
CDH1-210ENST00000566612 NPM2Q86SE8 214 aaKnown RBP15.61■□□□□ 0.09
CDH1-210ENST00000566612 NUP155O75694 1391 aa15.6■□□□□ 0.09
CDH1-210ENST00000566612 CARMIL2Q6F5E8 1435 aa15.59■□□□□ 0.09
CDH1-210ENST00000566612 MYOM3Q5VTT5 1437 aa15.59■□□□□ 0.09
CDH1-210ENST00000566612 TIAM1Q13009 1591 aa15.59■□□□□ 0.09
CDH1-210ENST00000566612 NCOA2Q15596 1464 aa15.58■□□□□ 0.08
CDH1-210ENST00000566612 RTL5Q5HYW3 569 aaPredicted RBP15.56■□□□□ 0.08
CDH1-210ENST00000566612 BIVM-ERCC5R4GMW8 1640 aa15.56■□□□□ 0.08
CDH1-210ENST00000566612 B4GALNT3Q6L9W6 998 aa15.55■□□□□ 0.08
CDH1-210ENST00000566612 FYCO1Q9BQS8 1478 aa15.55■□□□□ 0.08
CDH1-210ENST00000566612 CANXP27824 592 aaKnown RBP15.54■□□□□ 0.08
CDH1-210ENST00000566612 CC2D1BQ5T0F9 858 aaKnown RBP15.53■□□□□ 0.08
CDH1-210ENST00000566612 ANKRD30AQ9BXX3 1397 aa15.53■□□□□ 0.08
CDH1-210ENST00000566612 UACAQ9BZF9 1416 aa15.53■□□□□ 0.08
CDH1-210ENST00000566612 WDR43Q15061 677 aaKnown RBP eCLIP15.52■□□□□ 0.07
CDH1-210ENST00000566612 ANP32AP39687 249 aaKnown RBP15.52■□□□□ 0.07
CDH1-210ENST00000566612 DNMBPQ6XZF7 1577 aa15.51■□□□□ 0.07
CDH1-210ENST00000566612 TSHZ2Q9NRE2 1034 aa15.5■□□□□ 0.07
CDH1-210ENST00000566612 ABCA10Q8WWZ4 1543 aa15.5■□□□□ 0.07
CDH1-210ENST00000566612 PPP4R2Q9NY27 417 aa15.48■□□□□ 0.07
CDH1-210ENST00000566612 PCF11O94913 1555 aaKnown RBP15.47■□□□□ 0.07
CDH1-210ENST00000566612 BCL11AQ9H165 835 aa15.46■□□□□ 0.07
CDH1-210ENST00000566612 WDR97A6NE52 1622 aa15.46■□□□□ 0.07
CDH1-210ENST00000566612 PRKRIP1Q9H875 184 aaPredicted RBP15.45■□□□□ 0.06
CDH1-210ENST00000566612 KNSTRNQ9Y448 316 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms