RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 RUSC2Q8N2Y8 1516 aa32.61■■■□□ 2.81
CLN3-218ENST00000565688 CUL7Q14999 1698 aa32.57■■■□□ 2.8
CLN3-218ENST00000565688 KIAA0586Q9BVV6 1533 aa32.5■■■□□ 2.79
CLN3-218ENST00000565688 CARMIL1Q5VZK9 1371 aa32.42■■■□□ 2.78
CLN3-218ENST00000565688 NPM1P06748 294 aaKnown RBP eCLIP32.32■■■□□ 2.76
CLN3-218ENST00000565688 ADCY10Q96PN6 1610 aa32.24■■■□□ 2.75
CLN3-218ENST00000565688 KIF13AQ9H1H9 1805 aa32.23■■■□□ 2.75
CLN3-218ENST00000565688 MAPKBP1O60336 1514 aa32.22■■■□□ 2.75
CLN3-218ENST00000565688 CARMIL2Q6F5E8 1435 aa32.2■■■□□ 2.75
CLN3-218ENST00000565688 IQGAP2Q13576 1575 aa32.19■■■□□ 2.74
CLN3-218ENST00000565688 PTPRGP23470 1445 aa32.18■■■□□ 2.74
CLN3-218ENST00000565688 ABCC10Q5T3U5 1492 aa32.18■■■□□ 2.74
CLN3-218ENST00000565688 FAM69CQ0P6D2 419 aa32.14■■■□□ 2.74
CLN3-218ENST00000565688 RAPGEF2Q9Y4G8 1499 aa32.14■■■□□ 2.74
CLN3-218ENST00000565688 TNIKQ9UKE5 1360 aa32.13■■■□□ 2.73
CLN3-218ENST00000565688 DIP2BQ9P265 1576 aa32.07■■■□□ 2.72
CLN3-218ENST00000565688 TTBK1Q5TCY1 1321 aaPredicted RBP32.04■■■□□ 2.72
CLN3-218ENST00000565688 DISP1Q96F81 1524 aa32■■■□□ 2.71
CLN3-218ENST00000565688 AEBP2Q6ZN18 517 aaPredicted RBP32■■■□□ 2.71
CLN3-218ENST00000565688 UGGT2Q9NYU1 1516 aa32■■■□□ 2.71
CLN3-218ENST00000565688 ABCC2Q92887 1545 aa31.99■■■□□ 2.71
CLN3-218ENST00000565688 UHRF1BP1LA0JNW5 1464 aa31.96■■■□□ 2.71
CLN3-218ENST00000565688 UACAQ9BZF9 1416 aa31.93■■■□□ 2.7
CLN3-218ENST00000565688 PLB1Q6P1J6 1458 aa31.88■■■□□ 2.69
CLN3-218ENST00000565688 KIAA0556O60303 1618 aa31.87■■■□□ 2.69
CLN3-218ENST00000565688 ASXL2Q76L83 1435 aa31.86■■■□□ 2.69
CLN3-218ENST00000565688 CTTNBP2Q8WZ74 1663 aa31.83■■■□□ 2.69
CLN3-218ENST00000565688 PRXQ9BXM0 1461 aa31.83■■■□□ 2.69
CLN3-218ENST00000565688 KDM5BQ9UGL1 1544 aa31.8■■■□□ 2.68
CLN3-218ENST00000565688 TSPOAP1O95153 1857 aa31.79■■■□□ 2.68
CLN3-218ENST00000565688 GOLGA3Q08378 1498 aa31.78■■■□□ 2.68
CLN3-218ENST00000565688 KDM6BO15054 1643 aa31.78■■■□□ 2.68
CLN3-218ENST00000565688 GLI2P10070 1586 aa31.77■■■□□ 2.68
CLN3-218ENST00000565688 ZCCHC11Q5TAX3 1644 aaKnown RBP31.7■■■□□ 2.66
CLN3-218ENST00000565688 EPRSP07814 1512 aaKnown RBP31.66■■■□□ 2.66
CLN3-218ENST00000565688 PPRC1Q5VV67 1664 aaKnown RBP31.61■■■□□ 2.65
CLN3-218ENST00000565688 CSRNP3Q8WYN3 585 aa31.61■■■□□ 2.65
CLN3-218ENST00000565688 ABCA8O94911 1581 aa31.58■■■□□ 2.65
CLN3-218ENST00000565688 WDR7Q9Y4E6 1490 aa31.58■■■□□ 2.65
CLN3-218ENST00000565688 MAP3K4Q9Y6R4 1608 aa31.57■■■□□ 2.64
CLN3-218ENST00000565688 FAM9AQ8IZU1 332 aaPredicted RBP31.56■■■□□ 2.64
CLN3-218ENST00000565688 TEX14Q8IWB6 1497 aa31.54■■■□□ 2.64
CLN3-218ENST00000565688 EEA1Q15075 1411 aa31.54■■■□□ 2.64
CLN3-218ENST00000565688 P3H3Q8IVL6 736 aa31.42■■■□□ 2.62
CLN3-218ENST00000565688 COL17A1Q9UMD9 1497 aaPredicted RBP31.4■■■□□ 2.62
CLN3-218ENST00000565688 SAMD9Q5K651 1589 aa31.4■■■□□ 2.62
CLN3-218ENST00000565688 KDM4FA0A1W2PPD8 638 aa31.4■■■□□ 2.62
CLN3-218ENST00000565688 KCNH8Q96L42 1107 aa31.39■■■□□ 2.62
CLN3-218ENST00000565688 CD109Q6YHK3 1445 aa31.38■■■□□ 2.61
CLN3-218ENST00000565688 CFAP43Q8NDM7 1665 aa31.37■■■□□ 2.61
CLN3-218ENST00000565688 MAGI3Q5TCQ9 1506 aa31.35■■■□□ 2.61
CLN3-218ENST00000565688 ATP10BO94823 1461 aa31.33■■■□□ 2.61
CLN3-218ENST00000565688 ARID3CA6NKF2 412 aa31.28■■■□□ 2.6
CLN3-218ENST00000565688 RAPGEF6Q8TEU7 1601 aa31.26■■■□□ 2.59
CLN3-218ENST00000565688 KIF21BO75037 1637 aa31.24■■■□□ 2.59
CLN3-218ENST00000565688 RANGAP1P46060 587 aaPredicted RBP31.2■■■□□ 2.59
CLN3-218ENST00000565688 ADGRL1O94910 1474 aa31.19■■■□□ 2.58
CLN3-218ENST00000565688 FHOD3Q2V2M9 1422 aa31.18■■■□□ 2.58
CLN3-218ENST00000565688 NUP153P49790 1475 aaKnown RBP31.15■■■□□ 2.58
CLN3-218ENST00000565688 EFCAB5A4FU69 1503 aa31.15■■■□□ 2.58
CLN3-218ENST00000565688 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.15■■■□□ 2.58
CLN3-218ENST00000565688 HNRNPUL2Q1KMD3 747 aaKnown RBP31.15■■■□□ 2.58
CLN3-218ENST00000565688 ABCA9Q8IUA7 1624 aa31.15■■■□□ 2.58
CLN3-218ENST00000565688 PHLDB1Q86UU1 1377 aa31.12■■■□□ 2.57
CLN3-218ENST00000565688 ARAP3Q8WWN8 1544 aa31.12■■■□□ 2.57
CLN3-218ENST00000565688 CHIC1Q5VXU3 224 aa31.07■■■□□ 2.56
CLN3-218ENST00000565688 PLEKHD1A6NEE1 506 aa31.02■■■□□ 2.56
CLN3-218ENST00000565688 NEO1Q92859 1461 aa31.01■■■□□ 2.56
CLN3-218ENST00000565688 UBTFP17480 764 aaKnown RBP31■■■□□ 2.55
CLN3-218ENST00000565688 EHMT2Q96KQ7 1210 aa30.92■■■□□ 2.54
CLN3-218ENST00000565688 FMN1Q68DA7 1419 aa30.89■■■□□ 2.53
CLN3-218ENST00000565688 RAPGEF3O95398 923 aa30.88■■■□□ 2.53
CLN3-218ENST00000565688 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.84■■■□□ 2.53
CLN3-218ENST00000565688 ARHGAP35Q9NRY4 1499 aa30.84■■■□□ 2.53
CLN3-218ENST00000565688 CDK13Q14004 1512 aaKnown RBP30.83■■■□□ 2.53
CLN3-218ENST00000565688 CFAP74Q9C0B2 1584 aa30.82■■■□□ 2.52
CLN3-218ENST00000565688 FANCAO15360 1455 aa30.81■■■□□ 2.52
CLN3-218ENST00000565688 FRMPD1Q5SYB0 1578 aa30.8■■■□□ 2.52
CLN3-218ENST00000565688 HECW1Q76N89 1606 aa30.8■■■□□ 2.52
CLN3-218ENST00000565688 AKNAQ7Z591 1439 aa30.79■■■□□ 2.52
CLN3-218ENST00000565688 DENND4BO75064 1496 aaPredicted RBP30.78■■■□□ 2.52
CLN3-218ENST00000565688 TTC37Q6PGP7 1564 aa30.78■■■□□ 2.52
CLN3-218ENST00000565688 ATP1B4Q9UN42 357 aaPredicted RBP30.77■■■□□ 2.52
CLN3-218ENST00000565688 CDK11AQ9UQ88 783 aaPredicted RBP30.75■■■□□ 2.51
CLN3-218ENST00000565688 HECW2Q9P2P5 1572 aa30.72■■■□□ 2.51
CLN3-218ENST00000565688 RICTORQ6R327 1708 aa30.7■■■□□ 2.51
CLN3-218ENST00000565688 PLCH2O75038 1416 aa30.68■■■□□ 2.5
CLN3-218ENST00000565688 ARHGEF40Q8TER5 1519 aa30.68■■■□□ 2.5
CLN3-218ENST00000565688 ADAMTSL3P82987 1691 aa30.67■■■□□ 2.5
CLN3-218ENST00000565688 ARID4BQ4LE39 1312 aaPredicted RBP30.66■■■□□ 2.5
CLN3-218ENST00000565688 ZMYM4Q5VZL5 1548 aa30.63■■■□□ 2.49
CLN3-218ENST00000565688 BCORL1Q5H9F3 1711 aa30.61■■■□□ 2.49
CLN3-218ENST00000565688 TROQ12816 1431 aaPredicted RBP30.61■■■□□ 2.49
CLN3-218ENST00000565688 PTPRMP28827 1452 aa30.61■■■□□ 2.49
CLN3-218ENST00000565688 MAGI2Q86UL8 1455 aa30.6■■■□□ 2.49
CLN3-218ENST00000565688 KIF14Q15058 1648 aa30.59■■■□□ 2.49
CLN3-218ENST00000565688 CLIP1P30622 1438 aa30.59■■■□□ 2.49
CLN3-218ENST00000565688 EFCAB2Q5VUJ9 269 aa30.59■■■□□ 2.49
CLN3-218ENST00000565688 SCAPERQ9BY12 1400 aa30.58■■■□□ 2.49
CLN3-218ENST00000565688 MYO5CQ9NQX4 1742 aa30.58■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms