RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 NISCHQ9Y2I1 1504 aa46.69■■■■■ 5.06
CLN3-218ENST00000565688 CCDC180Q9P1Z9 1646 aa41.84■■■■■ 4.29
CLN3-218ENST00000565688 ABCC9O60706 1549 aa41.65■■■■■ 4.26
CLN3-218ENST00000565688 RB1CC1Q8TDY2 1594 aa39.77■■■■□ 3.96
CLN3-218ENST00000565688 NACADO15069 1562 aa39.55■■■■□ 3.92
CLN3-218ENST00000565688 DCAF8L2P0C7V8 631 aa39.32■■■■□ 3.89
CLN3-218ENST00000565688 MYO15BQ96JP2 1530 aa39.09■■■■□ 3.85
CLN3-218ENST00000565688 DNAJC5BQ9UF47 199 aa38.91■■■■□ 3.82
CLN3-218ENST00000565688 PABPN1Q86U42 306 aaKnown RBP eCLIP38.8■■■■□ 3.8
CLN3-218ENST00000565688 UNC13AQ9UPW8 1703 aa38.77■■■■□ 3.8
CLN3-218ENST00000565688 ZCCHC6Q5VYS8 1495 aaKnown RBP38.72■■■■□ 3.79
CLN3-218ENST00000565688 DCAF1Q9Y4B6 1507 aa38.62■■■■□ 3.77
CLN3-218ENST00000565688 BICRAQ9NZM4 1560 aa38.55■■■■□ 3.76
CLN3-218ENST00000565688 SHROOM4Q9ULL8 1493 aa38.17■■■■□ 3.7
CLN3-218ENST00000565688 SCRIBQ14160 1630 aa38.08■■■■□ 3.69
CLN3-218ENST00000565688 CC2D2AQ9P2K1 1620 aa37.65■■■■□ 3.62
CLN3-218ENST00000565688 EIF4G1Q04637 1599 aaKnown RBP37.62■■■■□ 3.61
CLN3-218ENST00000565688 CECR2Q9BXF3 1484 aa37.54■■■■□ 3.6
CLN3-218ENST00000565688 NCAPD3P42695 1498 aa36.5■■■■□ 3.43
CLN3-218ENST00000565688 ATAD2BQ9ULI0 1458 aa36.38■■■■□ 3.41
CLN3-218ENST00000565688 SMARCA4P51532 1647 aa36.37■■■■□ 3.41
CLN3-218ENST00000565688 SMARCA2P51531 1590 aa36.33■■■■□ 3.41
CLN3-218ENST00000565688 BAZ1AQ9NRL2 1556 aaPredicted RBP36.25■■■■□ 3.39
CLN3-218ENST00000565688 HMGXB3Q12766 1538 aa36.24■■■■□ 3.39
CLN3-218ENST00000565688 PEG3Q9GZU2 1588 aa36.06■■■■□ 3.36
CLN3-218ENST00000565688 BAZ1BQ9UIG0 1483 aaKnown RBP36.05■■■■□ 3.36
CLN3-218ENST00000565688 ERCC6Q03468 1493 aa36■■■■□ 3.35
CLN3-218ENST00000565688 MROH2BQ7Z745 1585 aa35.93■■■■□ 3.34
CLN3-218ENST00000565688 CUX2O14529 1486 aa35.92■■■■□ 3.34
CLN3-218ENST00000565688 NESP48681 1621 aa35.8■■■■□ 3.32
CLN3-218ENST00000565688 DNAJC5Q9H3Z4 198 aa35.71■■■■□ 3.31
CLN3-218ENST00000565688 LAMC3Q9Y6N6 1575 aa35.66■■■■□ 3.3
CLN3-218ENST00000565688 WIZO95785 1651 aa35.49■■■■□ 3.27
CLN3-218ENST00000565688 PDS5BQ9NTI5 1447 aa35.47■■■■□ 3.27
CLN3-218ENST00000565688 THOC2Q8NI27 1593 aaKnown RBP35.44■■■■□ 3.26
CLN3-218ENST00000565688 CADPSQ9ULU8 1353 aa35.39■■■■□ 3.26
CLN3-218ENST00000565688 KIF21AQ7Z4S6 1674 aa35.35■■■■□ 3.25
CLN3-218ENST00000565688 RSF1Q96T23 1441 aaPredicted RBP35.27■■■■□ 3.24
CLN3-218ENST00000565688 MRC2Q9UBG0 1479 aa35.12■■■■□ 3.21
CLN3-218ENST00000565688 TOP2AP11388 1531 aaKnown RBP35.11■■■■□ 3.21
CLN3-218ENST00000565688 WDR62O43379 1518 aa35.02■■■■□ 3.2
CLN3-218ENST00000565688 CFTRP13569 1480 aa35.02■■■■□ 3.2
CLN3-218ENST00000565688 CEP164Q9UPV0 1460 aa35.02■■■■□ 3.2
CLN3-218ENST00000565688 FANCD2Q9BXW9 1451 aa34.98■■■■□ 3.19
CLN3-218ENST00000565688 CCDC88BA6NC98 1476 aa34.7■■■■□ 3.15
CLN3-218ENST00000565688 URB2Q14146 1524 aaKnown RBP34.65■■■■□ 3.14
CLN3-218ENST00000565688 PRDM2Q13029 1718 aa34.64■■■■□ 3.14
CLN3-218ENST00000565688 ABCC8Q09428 1581 aa34.33■■■■□ 3.09
CLN3-218ENST00000565688 IFT140Q96RY7 1462 aa34.33■■■■□ 3.09
CLN3-218ENST00000565688 TOPBP1Q92547 1522 aa34.32■■■■□ 3.08
CLN3-218ENST00000565688 OSCARQ8IYS5 282 aa34.3■■■■□ 3.08
CLN3-218ENST00000565688 DNMBPQ6XZF7 1577 aa34.22■■■■□ 3.07
CLN3-218ENST00000565688 ZNF608Q9ULD9 1512 aaPredicted RBP34.19■■■■□ 3.06
CLN3-218ENST00000565688 TRIM41Q8WV44 630 aa34.16■■■■□ 3.06
CLN3-218ENST00000565688 EIF4G3O43432 1585 aaKnown RBP34.02■■■■□ 3.04
CLN3-218ENST00000565688 TARBP1Q13395 1621 aaKnown RBP34■■■■□ 3.03
CLN3-218ENST00000565688 POLA1P09884 1462 aaPredicted RBP33.98■■■■□ 3.03
CLN3-218ENST00000565688 AQRO60306 1485 aaKnown RBP eCLIP33.91■■■■□ 3.026e-6■■■■□ 25.1
CLN3-218ENST00000565688 SOGA1O94964 1423 aa33.85■■■■□ 3.01
CLN3-218ENST00000565688 RAD54L2Q9Y4B4 1467 aa33.82■■■■□ 3.01
CLN3-218ENST00000565688 SUPT5HO00267 1087 aaKnown RBP33.79■■■■□ 3
CLN3-218ENST00000565688 FGD5Q6ZNL6 1462 aa33.78■■■■□ 3
CLN3-218ENST00000565688 RIMBP3CA6NJZ7 1639 aa33.77■■■■□ 3
CLN3-218ENST00000565688 RIMBP3BA6NNM3 1639 aa33.77■■■■□ 3
CLN3-218ENST00000565688 RIMBP3Q9UFD9 1639 aa33.77■■■■□ 3
CLN3-218ENST00000565688 CUX1P39880 1505 aa33.77■■■■□ 3
CLN3-218ENST00000565688 WDR97A6NE52 1622 aa33.74■■■□□ 2.99
CLN3-218ENST00000565688 TDRD9Q8NDG6 1382 aaKnown RBP33.73■■■□□ 2.99
CLN3-218ENST00000565688 CHD1O14646 1710 aa33.72■■■□□ 2.99
CLN3-218ENST00000565688 ARHGEF11O15085 1522 aa33.7■■■□□ 2.99
CLN3-218ENST00000565688 FBLN2P98095 1184 aa33.68■■■□□ 2.98
CLN3-218ENST00000565688 SNAPC4Q5SXM2 1469 aa33.58■■■□□ 2.97
CLN3-218ENST00000565688 GRIN2BQ13224 1484 aa33.55■■■□□ 2.96
CLN3-218ENST00000565688 MAGI1Q96QZ7 1491 aaPredicted RBP33.55■■■□□ 2.96
CLN3-218ENST00000565688 CHMP7Q8WUX9 453 aaPredicted RBP33.49■■■□□ 2.95
CLN3-218ENST00000565688 CYB5RLQ6IPT4 315 aa33.45■■■□□ 2.95
CLN3-218ENST00000565688 GAPVD1Q14C86 1478 aa33.44■■■□□ 2.94
CLN3-218ENST00000565688 ABCA10Q8WWZ4 1543 aa33.43■■■□□ 2.94
CLN3-218ENST00000565688 SYNJ2O15056 1496 aa33.42■■■□□ 2.94
CLN3-218ENST00000565688 SYNJ1O43426 1573 aa33.4■■■□□ 2.94
CLN3-218ENST00000565688 CLASP1Q7Z460 1538 aa33.38■■■□□ 2.93
CLN3-218ENST00000565688 PBRM1Q86U86 1689 aa33.37■■■□□ 2.93
CLN3-218ENST00000565688 ARAP1Q96P48 1450 aa33.37■■■□□ 2.93
CLN3-218ENST00000565688 WRNQ14191 1432 aaPredicted RBP eCLIP33.36■■■□□ 2.93
CLN3-218ENST00000565688 ABCA5Q8WWZ7 1642 aa33.35■■■□□ 2.93
CLN3-218ENST00000565688 TOP2BQ02880 1626 aa33.28■■■□□ 2.92
CLN3-218ENST00000565688 BIVM-ERCC5R4GMW8 1640 aa33.28■■■□□ 2.92
CLN3-218ENST00000565688 GRIN2AQ12879 1464 aa33.11■■■□□ 2.89
CLN3-218ENST00000565688 ADAMTS12P58397 1594 aa33.09■■■□□ 2.89
CLN3-218ENST00000565688 TRHP20396 242 aaPredicted RBP33.04■■■□□ 2.88
CLN3-218ENST00000565688 FHAD1B1AJZ9 1412 aa33.03■■■□□ 2.88
CLN3-218ENST00000565688 ERICH3Q5RHP9 1530 aa33.03■■■□□ 2.88
CLN3-218ENST00000565688 NUP160Q12769 1436 aa32.99■■■□□ 2.87
CLN3-218ENST00000565688 CEP170Q5SW79 1584 aa32.94■■■□□ 2.86
CLN3-218ENST00000565688 SHROOM2Q13796 1616 aa32.81■■■□□ 2.84
CLN3-218ENST00000565688 ERCC6L2Q5T890 1561 aa32.81■■■□□ 2.84
CLN3-218ENST00000565688 KIF27Q86VH2 1401 aa32.68■■■□□ 2.82
CLN3-218ENST00000565688 JPH4Q96JJ6 628 aa32.66■■■□□ 2.82
CLN3-218ENST00000565688 PRG4Q92954 1404 aaPredicted RBP32.66■■■□□ 2.82
CLN3-218ENST00000565688 IGF1RP08069 1367 aa32.62■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms