RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 PRG4Q92954 1404 aaPredicted RBP28.86■■■□□ 2.21
CLK3-210ENST00000563112 RUSC2Q8N2Y8 1516 aa28.84■■■□□ 2.21
CLK3-210ENST00000563112 CARMIL1Q5VZK9 1371 aa28.83■■■□□ 2.21
CLK3-210ENST00000563112 KIAA0586Q9BVV6 1533 aa28.79■■■□□ 2.2
CLK3-210ENST00000563112 RAPGEF2Q9Y4G8 1499 aa28.6■■■□□ 2.17
CLK3-210ENST00000563112 NPM1P06748 294 aaKnown RBP eCLIP28.55■■■□□ 2.16
CLK3-210ENST00000563112 IQGAP2Q13576 1575 aa28.54■■■□□ 2.16
CLK3-210ENST00000563112 CARMIL2Q6F5E8 1435 aa28.54■■■□□ 2.16
CLK3-210ENST00000563112 PTPRGP23470 1445 aa28.48■■■□□ 2.15
CLK3-210ENST00000563112 TNIKQ9UKE5 1360 aa28.45■■■□□ 2.14
CLK3-210ENST00000563112 TTBK1Q5TCY1 1321 aaPredicted RBP28.44■■■□□ 2.14
CLK3-210ENST00000563112 ADCY10Q96PN6 1610 aa28.42■■■□□ 2.14
CLK3-210ENST00000563112 UGGT2Q9NYU1 1516 aa28.37■■■□□ 2.13
CLK3-210ENST00000563112 PRXQ9BXM0 1461 aa28.36■■■□□ 2.13
CLK3-210ENST00000563112 DISP1Q96F81 1524 aa28.35■■■□□ 2.13
CLK3-210ENST00000563112 MAPKBP1O60336 1514 aa28.34■■■□□ 2.13
CLK3-210ENST00000563112 CTTNBP2Q8WZ74 1663 aa28.32■■■□□ 2.12
CLK3-210ENST00000563112 KIF13AQ9H1H9 1805 aa28.32■■■□□ 2.12
CLK3-210ENST00000563112 CSRNP3Q8WYN3 585 aa28.31■■■□□ 2.12
CLK3-210ENST00000563112 FAM69CQ0P6D2 419 aa28.3■■■□□ 2.12
CLK3-210ENST00000563112 ABCC10Q5T3U5 1492 aa28.29■■■□□ 2.12
CLK3-210ENST00000563112 KIAA0556O60303 1618 aa28.26■■■□□ 2.11
CLK3-210ENST00000563112 UACAQ9BZF9 1416 aa28.26■■■□□ 2.11
CLK3-210ENST00000563112 EEA1Q15075 1411 aa28.25■■■□□ 2.11
CLK3-210ENST00000563112 ABCC2Q92887 1545 aa28.24■■■□□ 2.11
CLK3-210ENST00000563112 UHRF1BP1LA0JNW5 1464 aa28.23■■■□□ 2.11
CLK3-210ENST00000563112 GOLGA3Q08378 1498 aa28.23■■■□□ 2.11
CLK3-210ENST00000563112 DIP2BQ9P265 1576 aa28.2■■■□□ 2.1
CLK3-210ENST00000563112 FAM9AQ8IZU1 332 aaPredicted RBP28.13■■■□□ 2.09
CLK3-210ENST00000563112 PLB1Q6P1J6 1458 aa28.13■■■□□ 2.09
CLK3-210ENST00000563112 ASXL2Q76L83 1435 aa28.11■■■□□ 2.09
CLK3-210ENST00000563112 KDM5BQ9UGL1 1544 aa28.09■■■□□ 2.09
CLK3-210ENST00000563112 CHIC1Q5VXU3 224 aa28.07■■■□□ 2.08
CLK3-210ENST00000563112 ZCCHC11Q5TAX3 1644 aaKnown RBP28.02■■■□□ 2.08
CLK3-210ENST00000563112 TSPOAP1O95153 1857 aa28.02■■■□□ 2.08
CLK3-210ENST00000563112 P3H3Q8IVL6 736 aa28.01■■■□□ 2.07
CLK3-210ENST00000563112 ABCA8O94911 1581 aa27.99■■■□□ 2.07
CLK3-210ENST00000563112 GLI2P10070 1586 aa27.99■■■□□ 2.07
CLK3-210ENST00000563112 EPRSP07814 1512 aaKnown RBP27.93■■■□□ 2.06
CLK3-210ENST00000563112 KIF21BO75037 1637 aa27.93■■■□□ 2.06
CLK3-210ENST00000563112 SAMD9Q5K651 1589 aa27.92■■■□□ 2.06
CLK3-210ENST00000563112 RANGAP1P46060 587 aaPredicted RBP27.91■■■□□ 2.06
CLK3-210ENST00000563112 KDM6BO15054 1643 aa27.9■■■□□ 2.06
CLK3-210ENST00000563112 WDR7Q9Y4E6 1490 aa27.89■■■□□ 2.06
CLK3-210ENST00000563112 AEBP2Q6ZN18 517 aaPredicted RBP27.85■■■□□ 2.05
CLK3-210ENST00000563112 UBTFP17480 764 aaKnown RBP27.82■■■□□ 2.04
CLK3-210ENST00000563112 KCNH8Q96L42 1107 aa27.82■■■□□ 2.04
CLK3-210ENST00000563112 MAP3K4Q9Y6R4 1608 aa27.81■■■□□ 2.04
CLK3-210ENST00000563112 PPRC1Q5VV67 1664 aaKnown RBP27.81■■■□□ 2.04
CLK3-210ENST00000563112 ARID3CA6NKF2 412 aa27.8■■■□□ 2.04
CLK3-210ENST00000563112 TEX14Q8IWB6 1497 aa27.79■■■□□ 2.04
CLK3-210ENST00000563112 EHMT2Q96KQ7 1210 aa27.79■■■□□ 2.04
CLK3-210ENST00000563112 ATP10BO94823 1461 aa27.77■■■□□ 2.04
CLK3-210ENST00000563112 FHOD3Q2V2M9 1422 aa27.77■■■□□ 2.04
CLK3-210ENST00000563112 RAPGEF6Q8TEU7 1601 aa27.77■■■□□ 2.04
CLK3-210ENST00000563112 EFCAB5A4FU69 1503 aa27.76■■■□□ 2.03
CLK3-210ENST00000563112 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.74■■■□□ 2.03
CLK3-210ENST00000563112 HNRNPUL2Q1KMD3 747 aaKnown RBP27.74■■■□□ 2.03
CLK3-210ENST00000563112 CD109Q6YHK3 1445 aa27.72■■■□□ 2.03
CLK3-210ENST00000563112 CFAP43Q8NDM7 1665 aa27.71■■■□□ 2.03
CLK3-210ENST00000563112 MAGI3Q5TCQ9 1506 aa27.66■■■□□ 2.02
CLK3-210ENST00000563112 NUP153P49790 1475 aaKnown RBP27.65■■■□□ 2.02
CLK3-210ENST00000563112 COL17A1Q9UMD9 1497 aaPredicted RBP27.61■■■□□ 2.01
CLK3-210ENST00000563112 PLEKHD1A6NEE1 506 aa27.58■■■□□ 2.01
CLK3-210ENST00000563112 FMN1Q68DA7 1419 aa27.54■■■□□ 2
CLK3-210ENST00000563112 ABCA9Q8IUA7 1624 aa27.54■■■□□ 2
CLK3-210ENST00000563112 ARHGAP35Q9NRY4 1499 aa27.53■■■□□ 2
CLK3-210ENST00000563112 ATP1B4Q9UN42 357 aaPredicted RBP27.5■■□□□ 1.99
CLK3-210ENST00000563112 PHLDB1Q86UU1 1377 aa27.48■■□□□ 1.99
CLK3-210ENST00000563112 KDM4FA0A1W2PPD8 638 aa27.44■■□□□ 1.98
CLK3-210ENST00000563112 ARAP3Q8WWN8 1544 aa27.43■■□□□ 1.98
CLK3-210ENST00000563112 HECW1Q76N89 1606 aa27.42■■□□□ 1.98
CLK3-210ENST00000563112 CDK13Q14004 1512 aaKnown RBP27.41■■□□□ 1.98
CLK3-210ENST00000563112 NEO1Q92859 1461 aa27.4■■□□□ 1.98
CLK3-210ENST00000563112 CDK11AQ9UQ88 783 aaPredicted RBP27.39■■□□□ 1.98
CLK3-210ENST00000563112 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.33■■□□□ 1.97
CLK3-210ENST00000563112 ADGRL1O94910 1474 aa27.32■■□□□ 1.96
CLK3-210ENST00000563112 RAPGEF3O95398 923 aa27.29■■□□□ 1.96
CLK3-210ENST00000563112 TTC37Q6PGP7 1564 aa27.27■■□□□ 1.96
CLK3-210ENST00000563112 CLIP1P30622 1438 aa27.27■■□□□ 1.96
CLK3-210ENST00000563112 CFAP74Q9C0B2 1584 aa27.26■■□□□ 1.96
CLK3-210ENST00000563112 FANCAO15360 1455 aa27.26■■□□□ 1.95
CLK3-210ENST00000563112 AKNAQ7Z591 1439 aa27.25■■□□□ 1.95
CLK3-210ENST00000563112 CASKIN1Q8WXD9 1431 aa27.25■■□□□ 1.95
CLK3-210ENST00000563112 DENND4BO75064 1496 aaPredicted RBP27.22■■□□□ 1.95
CLK3-210ENST00000563112 TROQ12816 1431 aaPredicted RBP27.22■■□□□ 1.95
CLK3-210ENST00000563112 PLCH2O75038 1416 aa27.21■■□□□ 1.95
CLK3-210ENST00000563112 CCDC18Q5T9S5 1454 aa27.2■■□□□ 1.95
CLK3-210ENST00000563112 PCF11O94913 1555 aaKnown RBP27.2■■□□□ 1.94
CLK3-210ENST00000563112 LRRIQ1Q96JM4 1722 aa27.19■■□□□ 1.94
CLK3-210ENST00000563112 KIF14Q15058 1648 aa27.18■■□□□ 1.94
CLK3-210ENST00000563112 EFCAB2Q5VUJ9 269 aa27.16■■□□□ 1.94
CLK3-210ENST00000563112 FYCO1Q9BQS8 1478 aa27.16■■□□□ 1.94
CLK3-210ENST00000563112 FRMPD1Q5SYB0 1578 aa27.16■■□□□ 1.94
CLK3-210ENST00000563112 MYO5CQ9NQX4 1742 aa27.15■■□□□ 1.94
CLK3-210ENST00000563112 RICTORQ6R327 1708 aa27.12■■□□□ 1.93
CLK3-210ENST00000563112 SCAPERQ9BY12 1400 aa27.09■■□□□ 1.93
CLK3-210ENST00000563112 ARID4BQ4LE39 1312 aaPredicted RBP27.08■■□□□ 1.93
CLK3-210ENST00000563112 ARHGAP5Q13017 1502 aa27.06■■□□□ 1.92
CLK3-210ENST00000563112 ZMYM4Q5VZL5 1548 aa27.04■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms