RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 CCER1Q8TC90 406 aaPredicted RBP11.05□□□□□ -0.64
VPS13C-206ENST00000558338 NPM3O75607 178 aaKnown RBP11.04□□□□□ -0.64
VPS13C-206ENST00000558338 DAXXQ9UER7 740 aaPredicted RBP11.04□□□□□ -0.64
VPS13C-206ENST00000558338 APLP2Q06481 763 aa11.04□□□□□ -0.64
VPS13C-206ENST00000558338 ARAP1Q96P48 1450 aa11□□□□□ -0.65
VPS13C-206ENST00000558338 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11□□□□□ -0.65
VPS13C-206ENST00000558338 CUX2O14529 1486 aa10.99□□□□□ -0.65
VPS13C-206ENST00000558338 DNMBPQ6XZF7 1577 aa10.98□□□□□ -0.65
VPS13C-206ENST00000558338 FGD5Q6ZNL6 1462 aa10.98□□□□□ -0.65
VPS13C-206ENST00000558338 TTBK1Q5TCY1 1321 aaPredicted RBP10.98□□□□□ -0.65
VPS13C-206ENST00000558338 FANCD2Q9BXW9 1451 aa10.97□□□□□ -0.65
VPS13C-206ENST00000558338 LAMC3Q9Y6N6 1575 aa10.94□□□□□ -0.66
VPS13C-206ENST00000558338 ARHGAP35Q9NRY4 1499 aa10.92□□□□□ -0.66
VPS13C-206ENST00000558338 IGF1RP08069 1367 aa10.92□□□□□ -0.66
VPS13C-206ENST00000558338 CUL7Q14999 1698 aa10.91□□□□□ -0.66
VPS13C-206ENST00000558338 ABCA10Q8WWZ4 1543 aa10.91□□□□□ -0.66
VPS13C-206ENST00000558338 MAP3K1Q13233 1512 aa10.9□□□□□ -0.66
VPS13C-206ENST00000558338 CARMIL1Q5VZK9 1371 aa10.9□□□□□ -0.66
VPS13C-206ENST00000558338 TOPBP1Q92547 1522 aa10.9□□□□□ -0.66
VPS13C-206ENST00000558338 RANGAP1P46060 587 aaPredicted RBP10.87□□□□□ -0.67
VPS13C-206ENST00000558338 POLA1P09884 1462 aaPredicted RBP10.87□□□□□ -0.67
VPS13C-206ENST00000558338 WDR97A6NE52 1622 aa10.87□□□□□ -0.67
VPS13C-206ENST00000558338 RRBP1Q9P2E9 1410 aaKnown RBP10.87□□□□□ -0.67
VPS13C-206ENST00000558338 ABCB7O75027 752 aa10.86□□□□□ -0.67
VPS13C-206ENST00000558338 PRKCSHP14314 528 aaPredicted RBP10.86□□□□□ -0.67
VPS13C-206ENST00000558338 FHAD1B1AJZ9 1412 aa10.85□□□□□ -0.67
VPS13C-206ENST00000558338 EFCAB5A4FU69 1503 aa10.85□□□□□ -0.67
VPS13C-206ENST00000558338 TRHP20396 242 aaPredicted RBP10.85□□□□□ -0.67
VPS13C-206ENST00000558338 CLSPNQ9HAW4 1339 aa10.84□□□□□ -0.67
VPS13C-206ENST00000558338 HNRNPUL2Q1KMD3 747 aaKnown RBP10.84□□□□□ -0.67
VPS13C-206ENST00000558338 TIAM1Q13009 1591 aa10.84□□□□□ -0.67
VPS13C-206ENST00000558338 CTTNBP2Q8WZ74 1663 aa10.84□□□□□ -0.67
VPS13C-206ENST00000558338 PDS5BQ9NTI5 1447 aa10.83□□□□□ -0.68
VPS13C-206ENST00000558338 CFAP43Q8NDM7 1665 aa10.83□□□□□ -0.68
VPS13C-206ENST00000558338 NESP48681 1621 aa10.82□□□□□ -0.68
VPS13C-206ENST00000558338 ABCA5Q8WWZ7 1642 aa10.8□□□□□ -0.68
VPS13C-206ENST00000558338 RAD54L2Q9Y4B4 1467 aa10.8□□□□□ -0.68
VPS13C-206ENST00000558338 ZNF219Q9P2Y4 722 aaPredicted RBP10.8□□□□□ -0.68
VPS13C-206ENST00000558338 URB2Q14146 1524 aaKnown RBP10.8□□□□□ -0.68
VPS13C-206ENST00000558338 CCNB3Q8WWL7 1395 aa10.79□□□□□ -0.68
VPS13C-206ENST00000558338 AQRO60306 1485 aaKnown RBP eCLIP10.79□□□□□ -0.68
VPS13C-206ENST00000558338 SP7Q8TDD2 431 aaPredicted RBP10.78□□□□□ -0.68
VPS13C-206ENST00000558338 FYCO1Q9BQS8 1478 aa10.78□□□□□ -0.68
VPS13C-206ENST00000558338 KANK4Q5T7N3 995 aaPredicted RBP10.78□□□□□ -0.68
VPS13C-206ENST00000558338 PCF11O94913 1555 aaKnown RBP10.77□□□□□ -0.68
VPS13C-206ENST00000558338 ZNF316A6NFI3 1004 aaPredicted RBP10.76□□□□□ -0.69
VPS13C-206ENST00000558338 DIEXFQ68CQ4 756 aaKnown RBP10.76□□□□□ -0.69
VPS13C-206ENST00000558338 LRRC9Q6ZRR7 1453 aa10.76□□□□□ -0.69
VPS13C-206ENST00000558338 KIF21AQ7Z4S6 1674 aa10.76□□□□□ -0.69
VPS13C-206ENST00000558338 GAPVD1Q14C86 1478 aa10.73□□□□□ -0.69
VPS13C-206ENST00000558338 FMN1Q68DA7 1419 aa10.73□□□□□ -0.69
VPS13C-206ENST00000558338 CASKIN1Q8WXD9 1431 aa10.73□□□□□ -0.69
VPS13C-206ENST00000558338 DHX57Q6P158 1386 aaKnown RBP10.73□□□□□ -0.69
VPS13C-206ENST00000558338 RBM42Q9BTD8 480 aaKnown RBP10.72□□□□□ -0.69
VPS13C-206ENST00000558338 SAMD9Q5K651 1589 aa10.72□□□□□ -0.69
VPS13C-206ENST00000558338 THOC2Q8NI27 1593 aaKnown RBP10.72□□□□□ -0.69
VPS13C-206ENST00000558338 CHRDL2Q6WN34 429 aa10.71□□□□□ -0.69
VPS13C-206ENST00000558338 TARBP1Q13395 1621 aaKnown RBP10.71□□□□□ -0.7
VPS13C-206ENST00000558338 SLC4A2P04920 1241 aa10.7□□□□□ -0.7
VPS13C-206ENST00000558338 FHOD3Q2V2M9 1422 aa10.7□□□□□ -0.7
VPS13C-206ENST00000558338 PBRM1Q86U86 1689 aa10.69□□□□□ -0.7
VPS13C-206ENST00000558338 ZBTB22O15209 634 aa10.68□□□□□ -0.7
VPS13C-206ENST00000558338 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.68□□□□□ -0.7
VPS13C-206ENST00000558338 SNAPC4Q5SXM2 1469 aa10.67□□□□□ -0.7
VPS13C-206ENST00000558338 MRC2Q9UBG0 1479 aa10.67□□□□□ -0.7
VPS13C-206ENST00000558338 CENPBP07199 599 aaPredicted RBP10.66□□□□□ -0.7
VPS13C-206ENST00000558338 PHLDB1Q86UU1 1377 aa10.65□□□□□ -0.7
VPS13C-206ENST00000558338 TDRD9Q8NDG6 1382 aaKnown RBP10.65□□□□□ -0.7
VPS13C-206ENST00000558338 SETD5Q9C0A6 1442 aa10.64□□□□□ -0.71
VPS13C-206ENST00000558338 ADAMTS12P58397 1594 aa10.64□□□□□ -0.71
VPS13C-206ENST00000558338 TAOK2Q9UL54 1235 aa10.64□□□□□ -0.71
VPS13C-206ENST00000558338 EHBP1L1Q8N3D4 1523 aa10.63□□□□□ -0.71
VPS13C-206ENST00000558338 RAB3GAP2Q9H2M9 1393 aa10.62□□□□□ -0.71
VPS13C-206ENST00000558338 CCDC18Q5T9S5 1454 aa10.62□□□□□ -0.71
VPS13C-206ENST00000558338 GRIN2BQ13224 1484 aa10.62□□□□□ -0.71
VPS13C-206ENST00000558338 P3H3Q8IVL6 736 aa10.61□□□□□ -0.71
VPS13C-206ENST00000558338 SUPT6HQ7KZ85 1726 aaKnown RBP10.61□□□□□ -0.71
VPS13C-206ENST00000558338 ARXQ96QS3 562 aa10.61□□□□□ -0.71
VPS13C-206ENST00000558338 IQGAP2Q13576 1575 aa10.61□□□□□ -0.71
VPS13C-206ENST00000558338 HECW1Q76N89 1606 aa10.61□□□□□ -0.71
VPS13C-206ENST00000558338 IFT140Q96RY7 1462 aa10.6□□□□□ -0.71
VPS13C-206ENST00000558338 WDR62O43379 1518 aa10.6□□□□□ -0.71
VPS13C-206ENST00000558338 ACIN1Q9UKV3 1341 aaKnown RBP10.6□□□□□ -0.71
VPS13C-206ENST00000558338 MTUS2Q5JR59 1369 aa10.59□□□□□ -0.71
VPS13C-206ENST00000558338 FGD6Q6ZV73 1430 aa10.59□□□□□ -0.71
VPS13C-206ENST00000558338 LRRIQ1Q96JM4 1722 aa10.59□□□□□ -0.71
VPS13C-206ENST00000558338 ATP1B4Q9UN42 357 aaPredicted RBP10.59□□□□□ -0.71
VPS13C-206ENST00000558338 TIMELESSQ9UNS1 1208 aa10.58□□□□□ -0.72
VPS13C-206ENST00000558338 MAPKBP1O60336 1514 aa10.58□□□□□ -0.72
VPS13C-206ENST00000558338 ITGAEP38570 1179 aa10.57□□□□□ -0.72
VPS13C-206ENST00000558338 FAM50AQ14320 339 aaKnown RBP10.57□□□□□ -0.72
VPS13C-206ENST00000558338 BCANQ96GW7 911 aa10.56□□□□□ -0.72
VPS13C-206ENST00000558338 UGGT2Q9NYU1 1516 aa10.56□□□□□ -0.72
VPS13C-206ENST00000558338 NCOA2Q15596 1464 aa10.55□□□□□ -0.72
VPS13C-206ENST00000558338 MYOM3Q5VTT5 1437 aa10.55□□□□□ -0.72
VPS13C-206ENST00000558338 ARHGEF11O15085 1522 aa10.54□□□□□ -0.72
VPS13C-206ENST00000558338 SAMD1Q6SPF0 538 aaPredicted RBP10.54□□□□□ -0.72
VPS13C-206ENST00000558338 PTPN23Q9H3S7 1636 aa10.52□□□□□ -0.73
VPS13C-206ENST00000558338 HFM1A2PYH4 1435 aa10.51□□□□□ -0.73
VPS13C-206ENST00000558338 EIF4G3O43432 1585 aaKnown RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms