RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 ERICH3Q5RHP9 1530 aa12.77□□□□□ -0.37
SPG11-209ENST00000558253 POTEHQ6S545 545 aa12.75□□□□□ -0.37
SPG11-209ENST00000558253 KIF27Q86VH2 1401 aa12.75□□□□□ -0.37
SPG11-209ENST00000558253 CADPSQ9ULU8 1353 aa12.75□□□□□ -0.37
SPG11-209ENST00000558253 CLIP1P30622 1438 aa12.73□□□□□ -0.37
SPG11-209ENST00000558253 PRXQ9BXM0 1461 aa12.72□□□□□ -0.37
SPG11-209ENST00000558253 PRDM2Q13029 1718 aa12.72□□□□□ -0.37
SPG11-209ENST00000558253 CUX1P39880 1505 aa12.72□□□□□ -0.37
SPG11-209ENST00000558253 VPS8Q8N3P4 1428 aa12.7□□□□□ -0.38
SPG11-209ENST00000558253 PELP1Q8IZL8 1130 aaKnown RBP12.68□□□□□ -0.38
SPG11-209ENST00000558253 RAPGEF2Q9Y4G8 1499 aa12.67□□□□□ -0.38
SPG11-209ENST00000558253 PPARGC1BQ86YN6 1023 aaKnown RBP12.66□□□□□ -0.38
SPG11-209ENST00000558253 CC2D2AQ9P2K1 1620 aa12.65□□□□□ -0.38
SPG11-209ENST00000558253 ZBTB12Q9Y330 459 aaPredicted RBP12.64□□□□□ -0.39
SPG11-209ENST00000558253 RBM42Q9BTD8 480 aaKnown RBP12.61□□□□□ -0.39
SPG11-209ENST00000558253 CCER1Q8TC90 406 aaPredicted RBP12.59□□□□□ -0.39
SPG11-209ENST00000558253 IGF1RP08069 1367 aa12.56□□□□□ -0.4
SPG11-209ENST00000558253 FANCD2Q9BXW9 1451 aa12.56□□□□□ -0.4
SPG11-209ENST00000558253 CUX2O14529 1486 aa12.54□□□□□ -0.4
SPG11-209ENST00000558253 FGD5Q6ZNL6 1462 aa12.53□□□□□ -0.4
SPG11-209ENST00000558253 DNMBPQ6XZF7 1577 aa12.52□□□□□ -0.4
SPG11-209ENST00000558253 LAMC3Q9Y6N6 1575 aa12.52□□□□□ -0.4
SPG11-209ENST00000558253 FBLN2P98095 1184 aa12.52□□□□□ -0.41
SPG11-209ENST00000558253 CARMIL1Q5VZK9 1371 aa12.51□□□□□ -0.41
SPG11-209ENST00000558253 MKRN4PQ13434 485 aaPredicted RBP12.5□□□□□ -0.41
SPG11-209ENST00000558253 ARAP1Q96P48 1450 aa12.5□□□□□ -0.41
SPG11-209ENST00000558253 MAP3K1Q13233 1512 aa12.49□□□□□ -0.41
SPG11-209ENST00000558253 ABCA10Q8WWZ4 1543 aa12.49□□□□□ -0.41
SPG11-209ENST00000558253 PDS5BQ9NTI5 1447 aa12.47□□□□□ -0.41
SPG11-209ENST00000558253 TOPBP1Q92547 1522 aa12.46□□□□□ -0.42
SPG11-209ENST00000558253 CLSPNQ9HAW4 1339 aa12.45□□□□□ -0.42
SPG11-209ENST00000558253 ARHGAP35Q9NRY4 1499 aa12.44□□□□□ -0.42
SPG11-209ENST00000558253 FHAD1B1AJZ9 1412 aa12.43□□□□□ -0.42
SPG11-209ENST00000558253 CUL7Q14999 1698 aa12.41□□□□□ -0.42
SPG11-209ENST00000558253 POLA1P09884 1462 aaPredicted RBP12.4□□□□□ -0.42
SPG11-209ENST00000558253 RRBP1Q9P2E9 1410 aaKnown RBP12.4□□□□□ -0.42
SPG11-209ENST00000558253 MYT1Q01538 1121 aa12.4□□□□□ -0.42
SPG11-209ENST00000558253 TTBK1Q5TCY1 1321 aaPredicted RBP12.39□□□□□ -0.43
SPG11-209ENST00000558253 EFCAB5A4FU69 1503 aa12.39□□□□□ -0.43
SPG11-209ENST00000558253 OSCARQ8IYS5 282 aa12.38□□□□□ -0.43
SPG11-209ENST00000558253 RANGAP1P46060 587 aaPredicted RBP12.37□□□□□ -0.43
SPG11-209ENST00000558253 CHRDL2Q6WN34 429 aa12.36□□□□□ -0.43
SPG11-209ENST00000558253 AQRO60306 1485 aaKnown RBP eCLIP12.35□□□□□ -0.434e-6■■■■■ 31
SPG11-209ENST00000558253 NESP48681 1621 aa12.34□□□□□ -0.43
SPG11-209ENST00000558253 URB2Q14146 1524 aaKnown RBP12.33□□□□□ -0.44
SPG11-209ENST00000558253 RAD54L2Q9Y4B4 1467 aa12.33□□□□□ -0.44
SPG11-209ENST00000558253 CCNB3Q8WWL7 1395 aa12.32□□□□□ -0.44
SPG11-209ENST00000558253 KANK4Q5T7N3 995 aaPredicted RBP12.32□□□□□ -0.44
SPG11-209ENST00000558253 AKT1S1Q96B36 256 aa12.32□□□□□ -0.44
SPG11-209ENST00000558253 TIAM1Q13009 1591 aa12.3□□□□□ -0.44
SPG11-209ENST00000558253 SPDYE2BA6NHP3 402 aa12.3□□□□□ -0.44
SPG11-209ENST00000558253 SPDYE6P0CI01 402 aa12.3□□□□□ -0.44
SPG11-209ENST00000558253 SPDYE2Q495Y8 402 aa12.3□□□□□ -0.44
SPG11-209ENST00000558253 WDR97A6NE52 1622 aa12.29□□□□□ -0.44
SPG11-209ENST00000558253 FMN1Q68DA7 1419 aa12.29□□□□□ -0.44
SPG11-209ENST00000558253 GAPVD1Q14C86 1478 aa12.29□□□□□ -0.44
SPG11-209ENST00000558253 FYCO1Q9BQS8 1478 aa12.29□□□□□ -0.44
SPG11-209ENST00000558253 ABCA5Q8WWZ7 1642 aa12.29□□□□□ -0.44
SPG11-209ENST00000558253 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.29□□□□□ -0.44
SPG11-209ENST00000558253 CASKIN1Q8WXD9 1431 aa12.28□□□□□ -0.44
SPG11-209ENST00000558253 LRRC9Q6ZRR7 1453 aa12.28□□□□□ -0.44
SPG11-209ENST00000558253 ZNF316A6NFI3 1004 aaPredicted RBP12.28□□□□□ -0.44
SPG11-209ENST00000558253 DIEXFQ68CQ4 756 aaKnown RBP12.25□□□□□ -0.45
SPG11-209ENST00000558253 CTTNBP2Q8WZ74 1663 aa12.24□□□□□ -0.45
SPG11-209ENST00000558253 CFAP43Q8NDM7 1665 aa12.22□□□□□ -0.45
SPG11-209ENST00000558253 MRC2Q9UBG0 1479 aa12.22□□□□□ -0.45
SPG11-209ENST00000558253 DHX57Q6P158 1386 aaKnown RBP12.21□□□□□ -0.45
SPG11-209ENST00000558253 TDRD9Q8NDG6 1382 aaKnown RBP12.21□□□□□ -0.45
SPG11-209ENST00000558253 REM2Q8IYK8 340 aaPredicted RBP12.21□□□□□ -0.45
SPG11-209ENST00000558253 ZNF692Q9BU19 519 aaPredicted RBP12.21□□□□□ -0.45
SPG11-209ENST00000558253 THOC2Q8NI27 1593 aaKnown RBP12.21□□□□□ -0.46
SPG11-209ENST00000558253 TARBP1Q13395 1621 aaKnown RBP12.2□□□□□ -0.46
SPG11-209ENST00000558253 SSUH2Q9Y2M2 353 aa12.2□□□□□ -0.46
SPG11-209ENST00000558253 SAMD9Q5K651 1589 aa12.19□□□□□ -0.46
SPG11-209ENST00000558253 PCF11O94913 1555 aaKnown RBP12.18□□□□□ -0.46
SPG11-209ENST00000558253 IFT140Q96RY7 1462 aa12.18□□□□□ -0.46
SPG11-209ENST00000558253 KIF21AQ7Z4S6 1674 aa12.17□□□□□ -0.46
SPG11-209ENST00000558253 TIMELESSQ9UNS1 1208 aa12.17□□□□□ -0.46
SPG11-209ENST00000558253 FHOD3Q2V2M9 1422 aa12.17□□□□□ -0.46
SPG11-209ENST00000558253 GRIN2BQ13224 1484 aa12.16□□□□□ -0.46
SPG11-209ENST00000558253 SETD5Q9C0A6 1442 aa12.16□□□□□ -0.46
SPG11-209ENST00000558253 ACIN1Q9UKV3 1341 aaKnown RBP12.15□□□□□ -0.46
SPG11-209ENST00000558253 SPDYE4A6NLX3 237 aa12.15□□□□□ -0.46
SPG11-209ENST00000558253 SNAPC4Q5SXM2 1469 aa12.14□□□□□ -0.47
SPG11-209ENST00000558253 PHLDB1Q86UU1 1377 aa12.14□□□□□ -0.47
SPG11-209ENST00000558253 CCDC18Q5T9S5 1454 aa12.14□□□□□ -0.47
SPG11-209ENST00000558253 CENPBP07199 599 aaPredicted RBP12.13□□□□□ -0.47
SPG11-209ENST00000558253 WDR62O43379 1518 aa12.12□□□□□ -0.47
SPG11-209ENST00000558253 P3H3Q8IVL6 736 aa12.12□□□□□ -0.47
SPG11-209ENST00000558253 MTUS2Q5JR59 1369 aa12.11□□□□□ -0.47
SPG11-209ENST00000558253 RAB3GAP2Q9H2M9 1393 aa12.1□□□□□ -0.47
SPG11-209ENST00000558253 ATP1B4Q9UN42 357 aaPredicted RBP12.1□□□□□ -0.47
SPG11-209ENST00000558253 ADAMTS12P58397 1594 aa12.09□□□□□ -0.47
SPG11-209ENST00000558253 PBRM1Q86U86 1689 aa12.09□□□□□ -0.47
SPG11-209ENST00000558253 EHBP1L1Q8N3D4 1523 aa12.08□□□□□ -0.48
SPG11-209ENST00000558253 PITPNM1O00562 1244 aa12.08□□□□□ -0.48
SPG11-209ENST00000558253 FAM50AQ14320 339 aaKnown RBP12.08□□□□□ -0.48
SPG11-209ENST00000558253 FGD6Q6ZV73 1430 aa12.08□□□□□ -0.48
SPG11-209ENST00000558253 IQGAP2Q13576 1575 aa12.08□□□□□ -0.48
SPG11-209ENST00000558253 UGGT2Q9NYU1 1516 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms