RNA–Protein interactions for RNA: ENST00000556564.5

PTPN21-208, Transcript of protein tyrosine phosphatase, non-receptor type 21, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN21, Length 6,166 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN21-208ENST00000556564 WIZO95785 1651 aa23.89■■□□□ 1.41
PTPN21-208ENST00000556564 PPP1R15AO75807 674 aaPredicted RBP23.86■■□□□ 1.41
PTPN21-208ENST00000556564 ZBTB47Q9UFB7 747 aaPredicted RBP23.85■■□□□ 1.41
PTPN21-208ENST00000556564 CARMIL1Q5VZK9 1371 aa23.84■■□□□ 1.41
PTPN21-208ENST00000556564 ABCC8Q09428 1581 aa23.83■■□□□ 1.41
PTPN21-208ENST00000556564 PLEKHG5O94827 1062 aa23.82■■□□□ 1.4
PTPN21-208ENST00000556564 SOGA1O94964 1423 aa23.79■■□□□ 1.4
PTPN21-208ENST00000556564 TDRD9Q8NDG6 1382 aaKnown RBP23.75■■□□□ 1.39
PTPN21-208ENST00000556564 C14orf37Q86TY3 774 aa23.75■■□□□ 1.39
PTPN21-208ENST00000556564 TNIKQ9UKE5 1360 aa23.74■■□□□ 1.39
PTPN21-208ENST00000556564 TOP2AP11388 1531 aaKnown RBP23.73■■□□□ 1.39
PTPN21-208ENST00000556564 RGL3Q3MIN7 710 aa23.73■■□□□ 1.39
PTPN21-208ENST00000556564 ZBTB7CA1YPR0 619 aa23.72■■□□□ 1.39
PTPN21-208ENST00000556564 DDX10Q13206 875 aaKnown RBP23.68■■□□□ 1.38
PTPN21-208ENST00000556564 CADPSQ9ULU8 1353 aa23.65■■□□□ 1.38
PTPN21-208ENST00000556564 SMARCA4P51532 1647 aa23.65■■□□□ 1.38
PTPN21-208ENST00000556564 ATAD2BQ9ULI0 1458 aa23.64■■□□□ 1.38
PTPN21-208ENST00000556564 MLECQ14165 292 aa23.64■■□□□ 1.37
PTPN21-208ENST00000556564 CCNB3Q8WWL7 1395 aa23.63■■□□□ 1.37
PTPN21-208ENST00000556564 HIRIP3Q9BW71 556 aaPredicted RBP23.63■■□□□ 1.37
PTPN21-208ENST00000556564 SALL2Q9Y467 1007 aaPredicted RBP23.62■■□□□ 1.37
PTPN21-208ENST00000556564 A0A0G2JS52 829 aa23.61■■□□□ 1.37
PTPN21-208ENST00000556564 FAM9BQ8IZU0 186 aa23.59■■□□□ 1.37
PTPN21-208ENST00000556564 CARMIL2Q6F5E8 1435 aa23.57■■□□□ 1.36
PTPN21-208ENST00000556564 FHAD1B1AJZ9 1412 aa23.56■■□□□ 1.36
PTPN21-208ENST00000556564 TMC1Q8TDI8 760 aa23.54■■□□□ 1.36
PTPN21-208ENST00000556564 WDR43Q15061 677 aaKnown RBP eCLIP23.47■■□□□ 1.35
PTPN21-208ENST00000556564 FANCD2Q9BXW9 1451 aa23.47■■□□□ 1.35
PTPN21-208ENST00000556564 HAP1P54257 671 aaPredicted RBP23.47■■□□□ 1.35
PTPN21-208ENST00000556564 EIF4G2P78344 907 aaKnown RBP eCLIP23.43■■□□□ 1.34
PTPN21-208ENST00000556564 HNRNPUQ00839 825 aaKnown RBP eCLIP23.43■■□□□ 1.34
PTPN21-208ENST00000556564 GTF3C3Q9Y5Q9 886 aa23.42■■□□□ 1.34
PTPN21-208ENST00000556564 KANK1Q14678 1352 aa23.38■■□□□ 1.33
PTPN21-208ENST00000556564 GGT6Q6P531 493 aa23.37■■□□□ 1.33
PTPN21-208ENST00000556564 POGKQ9P215 609 aa23.35■■□□□ 1.33
PTPN21-208ENST00000556564 LMOD2Q6P5Q4 547 aa23.33■■□□□ 1.33
PTPN21-208ENST00000556564 CARD11Q9BXL7 1154 aa23.33■■□□□ 1.33
PTPN21-208ENST00000556564 ACIN1Q9UKV3 1341 aaKnown RBP23.33■■□□□ 1.33
PTPN21-208ENST00000556564 MRS2Q9HD23 443 aa23.33■■□□□ 1.32
PTPN21-208ENST00000556564 ARHGAP35Q9NRY4 1499 aa23.3■■□□□ 1.32
PTPN21-208ENST00000556564 PPM1GO15355 546 aaPredicted RBP23.29■■□□□ 1.32
PTPN21-208ENST00000556564 RAPGEF2Q9Y4G8 1499 aa23.29■■□□□ 1.32
PTPN21-208ENST00000556564 SIN3AQ96ST3 1273 aa23.29■■□□□ 1.32
PTPN21-208ENST00000556564 JPH4Q96JJ6 628 aa23.27■■□□□ 1.32
PTPN21-208ENST00000556564 RTL5Q5HYW3 569 aaPredicted RBP23.26■■□□□ 1.31
PTPN21-208ENST00000556564 FHOD3Q2V2M9 1422 aa23.25■■□□□ 1.31
PTPN21-208ENST00000556564 KANK4Q5T7N3 995 aaPredicted RBP23.25■■□□□ 1.31
PTPN21-208ENST00000556564 FMN1Q68DA7 1419 aa23.24■■□□□ 1.31
PTPN21-208ENST00000556564 CYB5RLQ6IPT4 315 aa23.22■■□□□ 1.31
PTPN21-208ENST00000556564 EFCAB2Q5VUJ9 269 aa23.21■■□□□ 1.31
PTPN21-208ENST00000556564 VPS8Q8N3P4 1428 aa23.2■■□□□ 1.3
PTPN21-208ENST00000556564 DCAF11Q8TEB1 546 aa23.19■■□□□ 1.3
PTPN21-208ENST00000556564 CDCA8Q53HL2 280 aa23.19■■□□□ 1.3
PTPN21-208ENST00000556564 KNSTRNQ9Y448 316 aa23.18■■□□□ 1.3
PTPN21-208ENST00000556564 NPM2Q86SE8 214 aaKnown RBP23.18■■□□□ 1.3
PTPN21-208ENST00000556564 OSCARQ8IYS5 282 aa23.18■■□□□ 1.3
PTPN21-208ENST00000556564 HNRNPMP52272 730 aaKnown RBP eCLIP23.16■■□□□ 1.3
PTPN21-208ENST00000556564 SENP3-EIF4A1A0A087X0R7 540 aa23.16■■□□□ 1.3
PTPN21-208ENST00000556564 HDGFP51858 240 aaKnown RBP23.15■■□□□ 1.3
PTPN21-208ENST00000556564 SAFB2Q14151 953 aaKnown RBP eCLIP23.15■■□□□ 1.3
PTPN21-208ENST00000556564 FKBP8Q14318 412 aa23.15■■□□□ 1.3
PTPN21-208ENST00000556564 FOXD1Q16676 465 aa23.13■■□□□ 1.29
PTPN21-208ENST00000556564 RAD54L2Q9Y4B4 1467 aa23.13■■□□□ 1.29
PTPN21-208ENST00000556564 TNNT2P45379 298 aaPredicted RBP23.13■■□□□ 1.29
PTPN21-208ENST00000556564 MYT1Q01538 1121 aa23.12■■□□□ 1.29
PTPN21-208ENST00000556564 FGD5Q6ZNL6 1462 aa23.11■■□□□ 1.29
PTPN21-208ENST00000556564 CFAP53Q96M91 514 aa23.11■■□□□ 1.29
PTPN21-208ENST00000556564 STK26Q9P289 416 aa23.1■■□□□ 1.29
PTPN21-208ENST00000556564 PKD2Q13563 968 aa23.09■■□□□ 1.29
PTPN21-208ENST00000556564 ARXQ96QS3 562 aa23.09■■□□□ 1.29
PTPN21-208ENST00000556564 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.08■■□□□ 1.29
PTPN21-208ENST00000556564 CC2D2AQ9P2K1 1620 aa23.08■■□□□ 1.28
PTPN21-208ENST00000556564 RUSC2Q8N2Y8 1516 aa23.07■■□□□ 1.28
PTPN21-208ENST00000556564 KIF3BO15066 747 aa23.06■■□□□ 1.28
PTPN21-208ENST00000556564 GAPVD1Q14C86 1478 aa23.06■■□□□ 1.28
PTPN21-208ENST00000556564 SOX12O15370 315 aa23.05■■□□□ 1.28
PTPN21-208ENST00000556564 MIER1Q8N108 512 aa23.05■■□□□ 1.28
PTPN21-208ENST00000556564 SRPK2P78362 688 aaKnown RBP23.04■■□□□ 1.28
PTPN21-208ENST00000556564 NCAPD3P42695 1498 aa23.04■■□□□ 1.28
PTPN21-208ENST00000556564 SETD5Q9C0A6 1442 aa23.03■■□□□ 1.28
PTPN21-208ENST00000556564 PTPRGP23470 1445 aa23.03■■□□□ 1.28
PTPN21-208ENST00000556564 CC2D1BQ5T0F9 858 aaKnown RBP23.03■■□□□ 1.28
PTPN21-208ENST00000556564 SPAG9O60271 1321 aaKnown RBP23.01■■□□□ 1.27
PTPN21-208ENST00000556564 ANKRD30AQ9BXX3 1397 aa23.01■■□□□ 1.27
PTPN21-208ENST00000556564 AQRO60306 1485 aaKnown RBP eCLIP23.01■■□□□ 1.27
PTPN21-208ENST00000556564 CCDC18Q5T9S5 1454 aa23■■□□□ 1.27
PTPN21-208ENST00000556564 NUP155O75694 1391 aa23■■□□□ 1.27
PTPN21-208ENST00000556564 LAS1LQ9Y4W2 734 aaKnown RBP22.99■■□□□ 1.27
PTPN21-208ENST00000556564 NEUROD2Q15784 382 aa22.98■■□□□ 1.27
PTPN21-208ENST00000556564 NESP48681 1621 aa22.97■■□□□ 1.27
PTPN21-208ENST00000556564 NUTM2DQ5VT03 806 aaPredicted RBP22.97■■□□□ 1.27
PTPN21-208ENST00000556564 IRX6P78412 446 aaPredicted RBP22.96■■□□□ 1.27
PTPN21-208ENST00000556564 TMF1P82094 1093 aa22.96■■□□□ 1.27
PTPN21-208ENST00000556564 WASHC2CQ9Y4E1 1318 aa22.94■■□□□ 1.26
PTPN21-208ENST00000556564 MYH16Q9H6N6 1097 aa22.93■■□□□ 1.26
PTPN21-208ENST00000556564 MAPK8IP3Q9UPT6 1336 aa22.93■■□□□ 1.26
PTPN21-208ENST00000556564 ANP32AP39687 249 aaKnown RBP22.93■■□□□ 1.26
PTPN21-208ENST00000556564 CCDC136Q96JN2 1154 aa22.91■■□□□ 1.26
PTPN21-208ENST00000556564 U2SURPO15042 1029 aaKnown RBP22.91■■□□□ 1.26
PTPN21-208ENST00000556564 MPHOSPH9Q99550 1183 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms