RNA–Protein interactions for RNA: ENST00000556564.5

PTPN21-208, Transcript of protein tyrosine phosphatase, non-receptor type 21, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN21, Length 6,166 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN21-208ENST00000556564 DCAF8L2P0C7V8 631 aa31.66■■■□□ 2.66
PTPN21-208ENST00000556564 NISCHQ9Y2I1 1504 aa31.01■■■□□ 2.56
PTPN21-208ENST00000556564 SHROOM4Q9ULL8 1493 aa29.45■■■□□ 2.3
PTPN21-208ENST00000556564 SUPT5HO00267 1087 aaKnown RBP29.42■■■□□ 2.3
PTPN21-208ENST00000556564 EHMT2Q96KQ7 1210 aa28.53■■■□□ 2.16
PTPN21-208ENST00000556564 FAM9AQ8IZU1 332 aaPredicted RBP27.76■■■□□ 2.03
PTPN21-208ENST00000556564 APLP2Q06481 763 aa27.58■■■□□ 2.01
PTPN21-208ENST00000556564 RANGAP1P46060 587 aaPredicted RBP27.49■■□□□ 1.99
PTPN21-208ENST00000556564 TTBK1Q5TCY1 1321 aaPredicted RBP27.39■■□□□ 1.98
PTPN21-208ENST00000556564 ABCC9O60706 1549 aa27.27■■□□□ 1.96
PTPN21-208ENST00000556564 TRIM41Q8WV44 630 aa27.26■■□□□ 1.95
PTPN21-208ENST00000556564 ATP1B4Q9UN42 357 aaPredicted RBP27.19■■□□□ 1.94
PTPN21-208ENST00000556564 UBTFP17480 764 aaKnown RBP26.95■■□□□ 1.9
PTPN21-208ENST00000556564 PABPN1Q86U42 306 aaKnown RBP eCLIP26.92■■□□□ 1.9
PTPN21-208ENST00000556564 PCGF6Q9BYE7 350 aa26.58■■□□□ 1.84
PTPN21-208ENST00000556564 PPARGC1BQ86YN6 1023 aaKnown RBP26.38■■□□□ 1.81
PTPN21-208ENST00000556564 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.37■■□□□ 1.81
PTPN21-208ENST00000556564 HNRNPUL2Q1KMD3 747 aaKnown RBP26.37■■□□□ 1.81
PTPN21-208ENST00000556564 MYT1LQ9UL68 1186 aa26.27■■□□□ 1.8
PTPN21-208ENST00000556564 CCER1Q8TC90 406 aaPredicted RBP26.25■■□□□ 1.79
PTPN21-208ENST00000556564 ITGAEP38570 1179 aa26.03■■□□□ 1.76
PTPN21-208ENST00000556564 SCRIBQ14160 1630 aa25.98■■□□□ 1.75
PTPN21-208ENST00000556564 LOC105371045A0A1W2PR82 267 aa25.98■■□□□ 1.75
PTPN21-208ENST00000556564 CHIC1Q5VXU3 224 aa25.93■■□□□ 1.74
PTPN21-208ENST00000556564 FBLN2P98095 1184 aa25.87■■□□□ 1.73
PTPN21-208ENST00000556564 PELP1Q8IZL8 1130 aaKnown RBP25.82■■□□□ 1.72
PTPN21-208ENST00000556564 CCDC180Q9P1Z9 1646 aa25.81■■□□□ 1.72
PTPN21-208ENST00000556564 ZEB1P37275 1124 aaPredicted RBP25.78■■□□□ 1.72
PTPN21-208ENST00000556564 ZCCHC6Q5VYS8 1495 aaKnown RBP25.62■■□□□ 1.69
PTPN21-208ENST00000556564 TRIM26Q12899 539 aaPredicted RBP25.58■■□□□ 1.69
PTPN21-208ENST00000556564 POLR3GLQ9BT43 218 aa25.54■■□□□ 1.68
PTPN21-208ENST00000556564 FAM50AQ14320 339 aaKnown RBP25.48■■□□□ 1.67
PTPN21-208ENST00000556564 RB1CC1Q8TDY2 1594 aa25.45■■□□□ 1.66
PTPN21-208ENST00000556564 ARID3CA6NKF2 412 aa25.37■■□□□ 1.65
PTPN21-208ENST00000556564 P3H3Q8IVL6 736 aa25.35■■□□□ 1.65
PTPN21-208ENST00000556564 YTHDC1Q96MU7 727 aaKnown RBP25.35■■□□□ 1.65
PTPN21-208ENST00000556564 CENPBP07199 599 aaPredicted RBP25.3■■□□□ 1.64
PTPN21-208ENST00000556564 CNGB1Q14028 1251 aaPredicted RBP25.29■■□□□ 1.64
PTPN21-208ENST00000556564 TRIM52Q96A61 297 aa25.25■■□□□ 1.63
PTPN21-208ENST00000556564 SLC4A1APQ9BWU0 796 aaKnown RBP25.24■■□□□ 1.63
PTPN21-208ENST00000556564 NACADO15069 1562 aa25.08■■□□□ 1.61
PTPN21-208ENST00000556564 CSRNP3Q8WYN3 585 aa25.07■■□□□ 1.6
PTPN21-208ENST00000556564 NEFLP07196 543 aa25.03■■□□□ 1.6
PTPN21-208ENST00000556564 ZNF777Q9ULD5 760 aaPredicted RBP24.99■■□□□ 1.59
PTPN21-208ENST00000556564 NEUROD1Q13562 356 aa24.99■■□□□ 1.59
PTPN21-208ENST00000556564 ZNF326Q5BKZ1 582 aaKnown RBP24.9■■□□□ 1.58
PTPN21-208ENST00000556564 ERICH6Q7L0X2 663 aa24.85■■□□□ 1.57
PTPN21-208ENST00000556564 BCANQ96GW7 911 aa24.84■■□□□ 1.57
PTPN21-208ENST00000556564 NPM1P06748 294 aaKnown RBP eCLIP24.83■■□□□ 1.57
PTPN21-208ENST00000556564 HRCP23327 699 aa24.83■■□□□ 1.57
PTPN21-208ENST00000556564 PLPPR3Q6T4P5 718 aa24.79■■□□□ 1.56
PTPN21-208ENST00000556564 CHMP7Q8WUX9 453 aaPredicted RBP24.79■■□□□ 1.56
PTPN21-208ENST00000556564 CDK11AQ9UQ88 783 aaPredicted RBP24.79■■□□□ 1.56
PTPN21-208ENST00000556564 BAZ1BQ9UIG0 1483 aaKnown RBP24.77■■□□□ 1.56
PTPN21-208ENST00000556564 ESF1Q9H501 851 aaKnown RBP24.67■■□□□ 1.54
PTPN21-208ENST00000556564 ERCC6Q03468 1493 aa24.66■■□□□ 1.54
PTPN21-208ENST00000556564 RSF1Q96T23 1441 aaPredicted RBP24.63■■□□□ 1.53
PTPN21-208ENST00000556564 CHGAP10645 457 aaKnown RBP24.49■■□□□ 1.51
PTPN21-208ENST00000556564 STAG3Q9UJ98 1225 aa24.48■■□□□ 1.51
PTPN21-208ENST00000556564 BAZ1AQ9NRL2 1556 aaPredicted RBP24.42■■□□□ 1.5
PTPN21-208ENST00000556564 CHIC2Q9UKJ5 165 aa24.41■■□□□ 1.5
PTPN21-208ENST00000556564 CECR2Q9BXF3 1484 aa24.4■■□□□ 1.5
PTPN21-208ENST00000556564 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.4■■□□□ 1.5
PTPN21-208ENST00000556564 DIEXFQ68CQ4 756 aaKnown RBP24.38■■□□□ 1.49
PTPN21-208ENST00000556564 KCNH8Q96L42 1107 aa24.38■■□□□ 1.49
PTPN21-208ENST00000556564 DCAF1Q9Y4B6 1507 aa24.35■■□□□ 1.49
PTPN21-208ENST00000556564 WRNQ14191 1432 aaPredicted RBP eCLIP24.34■■□□□ 1.49
PTPN21-208ENST00000556564 SLC24A1O60721 1099 aa24.33■■□□□ 1.48
PTPN21-208ENST00000556564 MTUS2Q5JR59 1369 aa24.29■■□□□ 1.48
PTPN21-208ENST00000556564 ANP32CO43423 234 aa24.22■■□□□ 1.47
PTPN21-208ENST00000556564 TSPY4P0CV99 314 aa24.21■■□□□ 1.47
PTPN21-208ENST00000556564 TSPY10P0CW01 314 aa24.21■■□□□ 1.47
PTPN21-208ENST00000556564 CLIP1P30622 1438 aa24.2■■□□□ 1.47
PTPN21-208ENST00000556564 DAXXQ9UER7 740 aaPredicted RBP24.19■■□□□ 1.46
PTPN21-208ENST00000556564 KIF27Q86VH2 1401 aa24.18■■□□□ 1.46
PTPN21-208ENST00000556564 PLEKHD1A6NEE1 506 aa24.14■■□□□ 1.45
PTPN21-208ENST00000556564 SENP3Q9H4L4 574 aaPredicted RBP24.13■■□□□ 1.45
PTPN21-208ENST00000556564 GOLGA3Q08378 1498 aa24.12■■□□□ 1.45
PTPN21-208ENST00000556564 CLSPNQ9HAW4 1339 aa24.09■■□□□ 1.45
PTPN21-208ENST00000556564 TONSLQ96HA7 1378 aa24.09■■□□□ 1.45
PTPN21-208ENST00000556564 MROH2BQ7Z745 1585 aa24.08■■□□□ 1.45
PTPN21-208ENST00000556564 EIF4G1Q04637 1599 aaKnown RBP24.07■■□□□ 1.44
PTPN21-208ENST00000556564 NEFMP07197 916 aa24.06■■□□□ 1.44
PTPN21-208ENST00000556564 SMARCA2P51531 1590 aa24.05■■□□□ 1.44
PTPN21-208ENST00000556564 ARID4BQ4LE39 1312 aaPredicted RBP24.05■■□□□ 1.44
PTPN21-208ENST00000556564 EEA1Q15075 1411 aa24.03■■□□□ 1.44
PTPN21-208ENST00000556564 RRP7BPQ9NSQ0 103 aa24.02■■□□□ 1.44
PTPN21-208ENST00000556564 KDM2AQ9Y2K7 1162 aa24.01■■□□□ 1.43
PTPN21-208ENST00000556564 ZNF316A6NFI3 1004 aaPredicted RBP24.01■■□□□ 1.43
PTPN21-208ENST00000556564 CUX2O14529 1486 aa23.98■■□□□ 1.43
PTPN21-208ENST00000556564 BCL11AQ9H165 835 aa23.97■■□□□ 1.43
PTPN21-208ENST00000556564 CCDC88BA6NC98 1476 aa23.97■■□□□ 1.43
PTPN21-208ENST00000556564 CEP162Q5TB80 1403 aa23.96■■□□□ 1.43
PTPN21-208ENST00000556564 TRHP20396 242 aaPredicted RBP23.96■■□□□ 1.43
PTPN21-208ENST00000556564 PDS5BQ9NTI5 1447 aa23.94■■□□□ 1.42
PTPN21-208ENST00000556564 CANXP27824 592 aaKnown RBP23.92■■□□□ 1.42
PTPN21-208ENST00000556564 CEP164Q9UPV0 1460 aa23.91■■□□□ 1.42
PTPN21-208ENST00000556564 MYO15BQ96JP2 1530 aa23.91■■□□□ 1.42
PTPN21-208ENST00000556564 SCAF1Q9H7N4 1312 aaKnown RBP23.89■■□□□ 1.42
PTPN21-208ENST00000556564 CFDP1Q9UEE9 299 aaPredicted RBP23.89■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms