RNA–Protein interactions for RNA: ENST00000554390.5

PPP4R3A-202, Transcript of protein phosphatase 4 regulatory subunit 3A, humanhuman

TSL 1 (best)

Gene PPP4R3A, Length 2,953 nt, Biotype non stop decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3A-202ENST00000554390 NCAPD3P42695 1498 aa24.06■■□□□ 1.44
PPP4R3A-202ENST00000554390 TRIM52Q96A61 297 aa24.06■■□□□ 1.44
PPP4R3A-202ENST00000554390 HMGXB3Q12766 1538 aa24.03■■□□□ 1.44
PPP4R3A-202ENST00000554390 CUX2O14529 1486 aa24.02■■□□□ 1.44
PPP4R3A-202ENST00000554390 PHLDB1Q86UU1 1377 aa24■■□□□ 1.43
PPP4R3A-202ENST00000554390 CFTRP13569 1480 aa24■■□□□ 1.43
PPP4R3A-202ENST00000554390 MAPKBP1O60336 1514 aa23.96■■□□□ 1.43
PPP4R3A-202ENST00000554390 IGF1RP08069 1367 aa23.96■■□□□ 1.43
PPP4R3A-202ENST00000554390 NEFLP07196 543 aa23.94■■□□□ 1.42
PPP4R3A-202ENST00000554390 WDR97A6NE52 1622 aa23.93■■□□□ 1.42
PPP4R3A-202ENST00000554390 CARMIL1Q5VZK9 1371 aa23.9■■□□□ 1.42
PPP4R3A-202ENST00000554390 MSH5O43196 834 aa23.89■■□□□ 1.41
PPP4R3A-202ENST00000554390 SETD5Q9C0A6 1442 aa23.89■■□□□ 1.41
PPP4R3A-202ENST00000554390 TIAM1Q13009 1591 aa23.84■■□□□ 1.41
PPP4R3A-202ENST00000554390 FHOD3Q2V2M9 1422 aa23.83■■□□□ 1.41
PPP4R3A-202ENST00000554390 FGD5Q6ZNL6 1462 aa23.82■■□□□ 1.4
PPP4R3A-202ENST00000554390 IRX6P78412 446 aaPredicted RBP23.8■■□□□ 1.4
PPP4R3A-202ENST00000554390 LRRC9Q6ZRR7 1453 aa23.79■■□□□ 1.4
PPP4R3A-202ENST00000554390 PPP1R15AO75807 674 aaPredicted RBP23.77■■□□□ 1.4
PPP4R3A-202ENST00000554390 ARID3CA6NKF2 412 aa23.75■■□□□ 1.39
PPP4R3A-202ENST00000554390 CADPSQ9ULU8 1353 aa23.74■■□□□ 1.39
PPP4R3A-202ENST00000554390 ANP32CO43423 234 aa23.71■■□□□ 1.39
PPP4R3A-202ENST00000554390 RAD54L2Q9Y4B4 1467 aa23.71■■□□□ 1.39
PPP4R3A-202ENST00000554390 PCF11O94913 1555 aaKnown RBP23.7■■□□□ 1.38
PPP4R3A-202ENST00000554390 CHIC2Q9UKJ5 165 aa23.69■■□□□ 1.38
PPP4R3A-202ENST00000554390 FANCIQ9NVI1 1328 aa23.68■■□□□ 1.38
PPP4R3A-202ENST00000554390 PRDM2Q13029 1718 aa23.67■■□□□ 1.38
PPP4R3A-202ENST00000554390 CNGB1Q14028 1251 aaPredicted RBP23.67■■□□□ 1.38
PPP4R3A-202ENST00000554390 CCER2I3L3R5 266 aa23.67■■□□□ 1.38
PPP4R3A-202ENST00000554390 ERICH6Q7L0X2 663 aa23.67■■□□□ 1.38
PPP4R3A-202ENST00000554390 FHAD1B1AJZ9 1412 aa23.64■■□□□ 1.38
PPP4R3A-202ENST00000554390 TONSLQ96HA7 1378 aa23.63■■□□□ 1.37
PPP4R3A-202ENST00000554390 MAP3K1Q13233 1512 aa23.62■■□□□ 1.37
PPP4R3A-202ENST00000554390 RRP7BPQ9NSQ0 103 aa23.61■■□□□ 1.37
PPP4R3A-202ENST00000554390 CDK11AQ9UQ88 783 aaPredicted RBP23.58■■□□□ 1.37
PPP4R3A-202ENST00000554390 SENP3-EIF4A1A0A087X0R7 540 aa23.58■■□□□ 1.37
PPP4R3A-202ENST00000554390 HNRNPUQ00839 825 aaKnown RBP eCLIP23.58■■□□□ 1.37
PPP4R3A-202ENST00000554390 FANCD2Q9BXW9 1451 aa23.57■■□□□ 1.36
PPP4R3A-202ENST00000554390 FOXD1Q16676 465 aa23.57■■□□□ 1.36
PPP4R3A-202ENST00000554390 CFAP43Q8NDM7 1665 aa23.57■■□□□ 1.36
PPP4R3A-202ENST00000554390 PTPRKQ15262 1439 aa23.56■■□□□ 1.36
PPP4R3A-202ENST00000554390 MTUS2Q5JR59 1369 aa23.54■■□□□ 1.36
PPP4R3A-202ENST00000554390 NESP48681 1621 aa23.51■■□□□ 1.35
PPP4R3A-202ENST00000554390 CCDC184Q52MB2 194 aa23.5■■□□□ 1.35
PPP4R3A-202ENST00000554390 TDRD9Q8NDG6 1382 aaKnown RBP23.49■■□□□ 1.35
PPP4R3A-202ENST00000554390 AQRO60306 1485 aaKnown RBP eCLIP23.48■■□□□ 1.356e-8■■■■□ 19.4
PPP4R3A-202ENST00000554390 PRKCSHP14314 528 aaPredicted RBP23.47■■□□□ 1.35
PPP4R3A-202ENST00000554390 FYCO1Q9BQS8 1478 aa23.46■■□□□ 1.35
PPP4R3A-202ENST00000554390 POLA1P09884 1462 aaPredicted RBP23.46■■□□□ 1.35
PPP4R3A-202ENST00000554390 CCDC18Q5T9S5 1454 aa23.46■■□□□ 1.35
PPP4R3A-202ENST00000554390 MYT1LQ9UL68 1186 aa23.46■■□□□ 1.35
PPP4R3A-202ENST00000554390 FGD6Q6ZV73 1430 aa23.45■■□□□ 1.34
PPP4R3A-202ENST00000554390 CC2D2AQ9P2K1 1620 aa23.45■■□□□ 1.34
PPP4R3A-202ENST00000554390 DEKP35659 375 aaKnown RBP23.44■■□□□ 1.34
PPP4R3A-202ENST00000554390 CASKIN1Q8WXD9 1431 aa23.44■■□□□ 1.34
PPP4R3A-202ENST00000554390 TIMELESSQ9UNS1 1208 aa23.43■■□□□ 1.34
PPP4R3A-202ENST00000554390 DNAJC5BQ9UF47 199 aa23.42■■□□□ 1.34
PPP4R3A-202ENST00000554390 TOPBP1Q92547 1522 aa23.42■■□□□ 1.34
PPP4R3A-202ENST00000554390 HSPA5P11021 654 aaKnown RBP23.41■■□□□ 1.34
PPP4R3A-202ENST00000554390 FAM9BQ8IZU0 186 aa23.4■■□□□ 1.34
PPP4R3A-202ENST00000554390 ABCA10Q8WWZ4 1543 aa23.39■■□□□ 1.34
PPP4R3A-202ENST00000554390 DNMBPQ6XZF7 1577 aa23.39■■□□□ 1.34
PPP4R3A-202ENST00000554390 WASHC2AQ641Q2 1341 aa23.37■■□□□ 1.33
PPP4R3A-202ENST00000554390 EFCAB5A4FU69 1503 aa23.37■■□□□ 1.33
PPP4R3A-202ENST00000554390 C11orf95C9JLR9 678 aaPredicted RBP23.35■■□□□ 1.33
PPP4R3A-202ENST00000554390 POLR3GLQ9BT43 218 aa23.34■■□□□ 1.33
PPP4R3A-202ENST00000554390 FMN1Q68DA7 1419 aa23.33■■□□□ 1.33
PPP4R3A-202ENST00000554390 CTTNBP2Q8WZ74 1663 aa23.33■■□□□ 1.32
PPP4R3A-202ENST00000554390 NAIPQ13075 1403 aa23.32■■□□□ 1.32
PPP4R3A-202ENST00000554390 SNAPC4Q5SXM2 1469 aa23.31■■□□□ 1.32
PPP4R3A-202ENST00000554390 PPP4R2Q9NY27 417 aa23.3■■□□□ 1.32
PPP4R3A-202ENST00000554390 UACAQ9BZF9 1416 aa23.3■■□□□ 1.32
PPP4R3A-202ENST00000554390 NCOA2Q15596 1464 aa23.29■■□□□ 1.32
PPP4R3A-202ENST00000554390 ERICH6BQ5W0A0 696 aa23.28■■□□□ 1.32
PPP4R3A-202ENST00000554390 CUL7Q14999 1698 aa23.28■■□□□ 1.32
PPP4R3A-202ENST00000554390 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.27■■□□□ 1.32
PPP4R3A-202ENST00000554390 L3MBTL2Q969R5 705 aa23.27■■□□□ 1.32
PPP4R3A-202ENST00000554390 HFM1A2PYH4 1435 aa23.27■■□□□ 1.32
PPP4R3A-202ENST00000554390 PTPN23Q9H3S7 1636 aa23.26■■□□□ 1.31
PPP4R3A-202ENST00000554390 B4GALNT3Q6L9W6 998 aa23.25■■□□□ 1.31
PPP4R3A-202ENST00000554390 ZNF326Q5BKZ1 582 aaKnown RBP23.23■■□□□ 1.31
PPP4R3A-202ENST00000554390 LRRIQ1Q96JM4 1722 aa23.22■■□□□ 1.31
PPP4R3A-202ENST00000554390 MYOM3Q5VTT5 1437 aa23.22■■□□□ 1.31
PPP4R3A-202ENST00000554390 NBR1Q14596 966 aa23.22■■□□□ 1.31
PPP4R3A-202ENST00000554390 URB2Q14146 1524 aaKnown RBP23.21■■□□□ 1.31
PPP4R3A-202ENST00000554390 EIF4G2P78344 907 aaKnown RBP eCLIP23.21■■□□□ 1.31
PPP4R3A-202ENST00000554390 MRS2Q9HD23 443 aa23.2■■□□□ 1.3
PPP4R3A-202ENST00000554390 NOP58Q9Y2X3 529 aaKnown RBP23.2■■□□□ 1.3
PPP4R3A-202ENST00000554390 MPHOSPH9Q99550 1183 aa23.19■■□□□ 1.3
PPP4R3A-202ENST00000554390 ZNF644Q9H582 1327 aaPredicted RBP23.18■■□□□ 1.3
PPP4R3A-202ENST00000554390 NBPF8Q3BBV2 869 aa23.18■■□□□ 1.3
PPP4R3A-202ENST00000554390 KDM6BO15054 1643 aa23.17■■□□□ 1.3
PPP4R3A-202ENST00000554390 MAGI3Q5TCQ9 1506 aa23.16■■□□□ 1.3
PPP4R3A-202ENST00000554390 KDM5BQ9UGL1 1544 aa23.16■■□□□ 1.3
PPP4R3A-202ENST00000554390 GAPVD1Q14C86 1478 aa23.15■■□□□ 1.3
PPP4R3A-202ENST00000554390 PAK3O75914 559 aaPredicted RBP23.15■■□□□ 1.3
PPP4R3A-202ENST00000554390 GRIN2BQ13224 1484 aa23.15■■□□□ 1.3
PPP4R3A-202ENST00000554390 DENND4BO75064 1496 aaPredicted RBP23.14■■□□□ 1.29
PPP4R3A-202ENST00000554390 SAMD9Q5K651 1589 aa23.12■■□□□ 1.29
PPP4R3A-202ENST00000554390 SUPT6HQ7KZ85 1726 aaKnown RBP23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms