RNA–Protein interactions for RNA: ENST00000547247.5

SMARCD1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 1 (best)

Gene SMARCD1, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-203ENST00000547247 RIMBP3Q9UFD9 1639 aa38.19■■■■□ 3.7
SMARCD1-203ENST00000547247 ARHGEF11O15085 1522 aa38.17■■■■□ 3.7
SMARCD1-203ENST00000547247 KIF21BO75037 1637 aa38.14■■■■□ 3.7
SMARCD1-203ENST00000547247 KIAA0586Q9BVV6 1533 aa38.08■■■■□ 3.69
SMARCD1-203ENST00000547247 GOLGA3Q08378 1498 aa37.98■■■■□ 3.67
SMARCD1-203ENST00000547247 JPH4Q96JJ6 628 aa37.96■■■■□ 3.67
SMARCD1-203ENST00000547247 EHMT2Q96KQ7 1210 aa37.95■■■■□ 3.67
SMARCD1-203ENST00000547247 CTTNBP2Q8WZ74 1663 aa37.93■■■■□ 3.66
SMARCD1-203ENST00000547247 IQGAP2Q13576 1575 aa37.93■■■■□ 3.66
SMARCD1-203ENST00000547247 SHROOM2Q13796 1616 aa37.92■■■■□ 3.66
SMARCD1-203ENST00000547247 UBTFP17480 764 aaKnown RBP37.88■■■■□ 3.65
SMARCD1-203ENST00000547247 ARAP1Q96P48 1450 aa37.86■■■■□ 3.65
SMARCD1-203ENST00000547247 ERCC6L2Q5T890 1561 aa37.81■■■■□ 3.64
SMARCD1-203ENST00000547247 PRG4Q92954 1404 aaPredicted RBP37.81■■■■□ 3.64
SMARCD1-203ENST00000547247 CYB5RLQ6IPT4 315 aa37.79■■■■□ 3.64
SMARCD1-203ENST00000547247 UGGT2Q9NYU1 1516 aa37.75■■■■□ 3.63
SMARCD1-203ENST00000547247 CARMIL2Q6F5E8 1435 aa37.68■■■■□ 3.62
SMARCD1-203ENST00000547247 DISP1Q96F81 1524 aa37.62■■■■□ 3.61
SMARCD1-203ENST00000547247 LOC105371045A0A1W2PR82 267 aa37.61■■■■□ 3.61
SMARCD1-203ENST00000547247 TNIKQ9UKE5 1360 aa37.6■■■■□ 3.61
SMARCD1-203ENST00000547247 RANGAP1P46060 587 aaPredicted RBP37.59■■■■□ 3.61
SMARCD1-203ENST00000547247 KIAA0556O60303 1618 aa37.55■■■■□ 3.6
SMARCD1-203ENST00000547247 SAMD9Q5K651 1589 aa37.48■■■■□ 3.59
SMARCD1-203ENST00000547247 EFCAB5A4FU69 1503 aa37.44■■■■□ 3.58
SMARCD1-203ENST00000547247 P3H3Q8IVL6 736 aa37.44■■■■□ 3.58
SMARCD1-203ENST00000547247 PTPRGP23470 1445 aa37.44■■■■□ 3.58
SMARCD1-203ENST00000547247 TTBK1Q5TCY1 1321 aaPredicted RBP37.41■■■■□ 3.58
SMARCD1-203ENST00000547247 ARHGAP35Q9NRY4 1499 aa37.34■■■■□ 3.57
SMARCD1-203ENST00000547247 FHOD3Q2V2M9 1422 aa37.32■■■■□ 3.56
SMARCD1-203ENST00000547247 CLIP1P30622 1438 aa37.31■■■■□ 3.56
SMARCD1-203ENST00000547247 CEP162Q5TB80 1403 aa37.27■■■■□ 3.56
SMARCD1-203ENST00000547247 UACAQ9BZF9 1416 aa37.19■■■■□ 3.54
SMARCD1-203ENST00000547247 ADCY10Q96PN6 1610 aa37.18■■■■□ 3.54
SMARCD1-203ENST00000547247 PLB1Q6P1J6 1458 aa37.15■■■■□ 3.54
SMARCD1-203ENST00000547247 UHRF1BP1LA0JNW5 1464 aa37.12■■■■□ 3.53
SMARCD1-203ENST00000547247 FMN1Q68DA7 1419 aa37.11■■■■□ 3.53
SMARCD1-203ENST00000547247 ABCA8O94911 1581 aa37.11■■■■□ 3.53
SMARCD1-203ENST00000547247 ABCC2Q92887 1545 aa37.1■■■■□ 3.53
SMARCD1-203ENST00000547247 NPM1P06748 294 aaKnown RBP eCLIP37.04■■■■□ 3.52
SMARCD1-203ENST00000547247 RAPGEF6Q8TEU7 1601 aa37.02■■■■□ 3.52
SMARCD1-203ENST00000547247 TRHP20396 242 aaPredicted RBP37■■■■□ 3.51
SMARCD1-203ENST00000547247 KDM5BQ9UGL1 1544 aa36.94■■■■□ 3.5
SMARCD1-203ENST00000547247 NUP153P49790 1475 aaKnown RBP36.91■■■■□ 3.5
SMARCD1-203ENST00000547247 MAPKBP1O60336 1514 aa36.9■■■■□ 3.5
SMARCD1-203ENST00000547247 ATP1B4Q9UN42 357 aaPredicted RBP36.89■■■■□ 3.5
SMARCD1-203ENST00000547247 CASKIN1Q8WXD9 1431 aa36.87■■■■□ 3.49
SMARCD1-203ENST00000547247 ARID3CA6NKF2 412 aa36.86■■■■□ 3.49
SMARCD1-203ENST00000547247 ZCCHC11Q5TAX3 1644 aaKnown RBP36.85■■■■□ 3.49
SMARCD1-203ENST00000547247 HECW1Q76N89 1606 aa36.85■■■■□ 3.49
SMARCD1-203ENST00000547247 PCF11O94913 1555 aaKnown RBP36.84■■■■□ 3.49
SMARCD1-203ENST00000547247 ATP10BO94823 1461 aa36.84■■■■□ 3.49
SMARCD1-203ENST00000547247 FYCO1Q9BQS8 1478 aa36.81■■■■□ 3.48
SMARCD1-203ENST00000547247 VPS8Q8N3P4 1428 aa36.79■■■■□ 3.48
SMARCD1-203ENST00000547247 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.78■■■■□ 3.48
SMARCD1-203ENST00000547247 HNRNPUL2Q1KMD3 747 aaKnown RBP36.78■■■■□ 3.48
SMARCD1-203ENST00000547247 KIF13AQ9H1H9 1805 aa36.77■■■■□ 3.48
SMARCD1-203ENST00000547247 EPRSP07814 1512 aaKnown RBP36.74■■■■□ 3.47
SMARCD1-203ENST00000547247 ASXL2Q76L83 1435 aa36.73■■■■□ 3.47
SMARCD1-203ENST00000547247 ABCC10Q5T3U5 1492 aa36.7■■■■□ 3.47
SMARCD1-203ENST00000547247 CDK13Q14004 1512 aaKnown RBP36.7■■■■□ 3.47
SMARCD1-203ENST00000547247 DIP2BQ9P265 1576 aa36.69■■■■□ 3.46
SMARCD1-203ENST00000547247 CCDC18Q5T9S5 1454 aa36.67■■■■□ 3.46
SMARCD1-203ENST00000547247 LRRIQ1Q96JM4 1722 aa36.65■■■■□ 3.46
SMARCD1-203ENST00000547247 WDR7Q9Y4E6 1490 aa36.63■■■■□ 3.45
SMARCD1-203ENST00000547247 FAM69CQ0P6D2 419 aa36.61■■■■□ 3.45
SMARCD1-203ENST00000547247 PLEKHD1A6NEE1 506 aa36.61■■■■□ 3.45
SMARCD1-203ENST00000547247 CDK11AQ9UQ88 783 aaPredicted RBP36.6■■■■□ 3.45
SMARCD1-203ENST00000547247 KCNH8Q96L42 1107 aa36.53■■■■□ 3.44
SMARCD1-203ENST00000547247 GLI2P10070 1586 aa36.48■■■■□ 3.43
SMARCD1-203ENST00000547247 TSPOAP1O95153 1857 aa36.44■■■■□ 3.42
SMARCD1-203ENST00000547247 TROQ12816 1431 aaPredicted RBP36.43■■■■□ 3.42
SMARCD1-203ENST00000547247 APLP2Q06481 763 aa36.43■■■■□ 3.42
SMARCD1-203ENST00000547247 TIAM1Q13009 1591 aa36.41■■■■□ 3.42
SMARCD1-203ENST00000547247 CFAP43Q8NDM7 1665 aa36.41■■■■□ 3.42
SMARCD1-203ENST00000547247 MAP3K1Q13233 1512 aa36.39■■■■□ 3.42
SMARCD1-203ENST00000547247 MAGI3Q5TCQ9 1506 aa36.39■■■■□ 3.42
SMARCD1-203ENST00000547247 MTUS2Q5JR59 1369 aa36.37■■■■□ 3.41
SMARCD1-203ENST00000547247 MAP3K4Q9Y6R4 1608 aa36.36■■■■□ 3.41
SMARCD1-203ENST00000547247 KIF14Q15058 1648 aa36.3■■■■□ 3.4
SMARCD1-203ENST00000547247 PPRC1Q5VV67 1664 aaKnown RBP36.29■■■■□ 3.4
SMARCD1-203ENST00000547247 ABCA9Q8IUA7 1624 aa36.29■■■■□ 3.4
SMARCD1-203ENST00000547247 EHBP1L1Q8N3D4 1523 aa36.28■■■■□ 3.4
SMARCD1-203ENST00000547247 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.26■■■■□ 3.4
SMARCD1-203ENST00000547247 LRRC9Q6ZRR7 1453 aa36.26■■■■□ 3.4
SMARCD1-203ENST00000547247 CD109Q6YHK3 1445 aa36.25■■■■□ 3.39
SMARCD1-203ENST00000547247 KANK4Q5T7N3 995 aaPredicted RBP36.23■■■■□ 3.39
SMARCD1-203ENST00000547247 TTC37Q6PGP7 1564 aa36.2■■■■□ 3.39
SMARCD1-203ENST00000547247 TEX14Q8IWB6 1497 aa36.14■■■■□ 3.38
SMARCD1-203ENST00000547247 SUPT6HQ7KZ85 1726 aaKnown RBP36.12■■■■□ 3.37
SMARCD1-203ENST00000547247 KDM6BO15054 1643 aa36.08■■■■□ 3.37
SMARCD1-203ENST00000547247 NCOA2Q15596 1464 aa36.08■■■■□ 3.37
SMARCD1-203ENST00000547247 PLCH2O75038 1416 aa36.08■■■■□ 3.37
SMARCD1-203ENST00000547247 MYO5CQ9NQX4 1742 aa36.06■■■■□ 3.36
SMARCD1-203ENST00000547247 CCNB3Q8WWL7 1395 aa36.05■■■■□ 3.36
SMARCD1-203ENST00000547247 ARAP3Q8WWN8 1544 aa36.01■■■■□ 3.36
SMARCD1-203ENST00000547247 GPATCH8Q9UKJ3 1502 aaKnown RBP36■■■■□ 3.35
SMARCD1-203ENST00000547247 CDC42BPAQ5VT25 1732 aa35.98■■■■□ 3.35
SMARCD1-203ENST00000547247 PREX2Q70Z35 1606 aa35.98■■■■□ 3.35
SMARCD1-203ENST00000547247 FANCAO15360 1455 aa35.98■■■■□ 3.35
SMARCD1-203ENST00000547247 EFCAB2Q5VUJ9 269 aa35.98■■■■□ 3.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms