RNA–Protein interactions for RNA: ENST00000547247.5

SMARCD1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 1 (best)

Gene SMARCD1, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-203ENST00000547247 NISCHQ9Y2I1 1504 aa55.18■■■■■ 6.42
SMARCD1-203ENST00000547247 CCDC180Q9P1Z9 1646 aa48.78■■■■■ 5.4
SMARCD1-203ENST00000547247 ABCC9O60706 1549 aa47.5■■■■■ 5.19
SMARCD1-203ENST00000547247 ZCCHC6Q5VYS8 1495 aaKnown RBP46.08■■■■■ 4.97
SMARCD1-203ENST00000547247 DCAF8L2P0C7V8 631 aa45.96■■■■■ 4.95
SMARCD1-203ENST00000547247 NACADO15069 1562 aa45.76■■■■■ 4.92
SMARCD1-203ENST00000547247 RB1CC1Q8TDY2 1594 aa45.73■■■■■ 4.91
SMARCD1-203ENST00000547247 DCAF1Q9Y4B6 1507 aa45.68■■■■■ 4.9
SMARCD1-203ENST00000547247 MYO15BQ96JP2 1530 aa45.66■■■■■ 4.9
SMARCD1-203ENST00000547247 UNC13AQ9UPW8 1703 aa44.79■■■■■ 4.76
SMARCD1-203ENST00000547247 SCRIBQ14160 1630 aa44.57■■■■■ 4.73
SMARCD1-203ENST00000547247 PABPN1Q86U42 306 aaKnown RBP eCLIP44.38■■■■■ 4.69
SMARCD1-203ENST00000547247 BICRAQ9NZM4 1560 aa44.35■■■■■ 4.69
SMARCD1-203ENST00000547247 SHROOM4Q9ULL8 1493 aa43.96■■■■■ 4.63
SMARCD1-203ENST00000547247 DNAJC5BQ9UF47 199 aa43.44■■■■■ 4.54
SMARCD1-203ENST00000547247 EIF4G1Q04637 1599 aaKnown RBP43.17■■■■■ 4.5
SMARCD1-203ENST00000547247 CC2D2AQ9P2K1 1620 aa42.98■■■■■ 4.47
SMARCD1-203ENST00000547247 CECR2Q9BXF3 1484 aa42.92■■■■■ 4.46
SMARCD1-203ENST00000547247 BAZ1AQ9NRL2 1556 aaPredicted RBP42.73■■■■■ 4.43
SMARCD1-203ENST00000547247 SMARCA4P51532 1647 aa42.69■■■■■ 4.42
SMARCD1-203ENST00000547247 MROH2BQ7Z745 1585 aa42.54■■■■■ 4.4
SMARCD1-203ENST00000547247 ATAD2BQ9ULI0 1458 aa42.33■■■■■ 4.37
SMARCD1-203ENST00000547247 SMARCA2P51531 1590 aa42.31■■■■■ 4.36
SMARCD1-203ENST00000547247 RSF1Q96T23 1441 aaPredicted RBP42.26■■■■■ 4.36
SMARCD1-203ENST00000547247 PEG3Q9GZU2 1588 aa42.26■■■■■ 4.36
SMARCD1-203ENST00000547247 NCAPD3P42695 1498 aa42.23■■■■■ 4.35
SMARCD1-203ENST00000547247 WIZO95785 1651 aa42.1■■■■■ 4.33
SMARCD1-203ENST00000547247 HMGXB3Q12766 1538 aa42.06■■■■■ 4.32
SMARCD1-203ENST00000547247 BAZ1BQ9UIG0 1483 aaKnown RBP42.02■■■■■ 4.32
SMARCD1-203ENST00000547247 TOP2AP11388 1531 aaKnown RBP41.69■■■■■ 4.26
SMARCD1-203ENST00000547247 SUPT5HO00267 1087 aaKnown RBP41.67■■■■■ 4.26
SMARCD1-203ENST00000547247 CCDC88BA6NC98 1476 aa41.22■■■■■ 4.19
SMARCD1-203ENST00000547247 NESP48681 1621 aa41.14■■■■■ 4.18
SMARCD1-203ENST00000547247 LAMC3Q9Y6N6 1575 aa41.05■■■■■ 4.16
SMARCD1-203ENST00000547247 CADPSQ9ULU8 1353 aa41.04■■■■■ 4.16
SMARCD1-203ENST00000547247 ERCC6Q03468 1493 aa40.92■■■■■ 4.14
SMARCD1-203ENST00000547247 CFTRP13569 1480 aa40.9■■■■■ 4.14
SMARCD1-203ENST00000547247 PDS5BQ9NTI5 1447 aa40.75■■■■■ 4.11
SMARCD1-203ENST00000547247 KIF21AQ7Z4S6 1674 aa40.71■■■■■ 4.11
SMARCD1-203ENST00000547247 PRDM2Q13029 1718 aa40.6■■■■■ 4.09
SMARCD1-203ENST00000547247 FANCD2Q9BXW9 1451 aa40.56■■■■■ 4.08
SMARCD1-203ENST00000547247 THOC2Q8NI27 1593 aaKnown RBP40.5■■■■■ 4.07
SMARCD1-203ENST00000547247 CEP164Q9UPV0 1460 aa40.46■■■■■ 4.07
SMARCD1-203ENST00000547247 CUX2O14529 1486 aa40.41■■■■■ 4.06
SMARCD1-203ENST00000547247 MRC2Q9UBG0 1479 aa40.33■■■■■ 4.05
SMARCD1-203ENST00000547247 WDR62O43379 1518 aa40.2■■■■■ 4.03
SMARCD1-203ENST00000547247 URB2Q14146 1524 aaKnown RBP40.1■■■■■ 4.01
SMARCD1-203ENST00000547247 ABCC8Q09428 1581 aa40.01■■■■■ 4
SMARCD1-203ENST00000547247 TOPBP1Q92547 1522 aa39.97■■■■□ 3.99
SMARCD1-203ENST00000547247 DNMBPQ6XZF7 1577 aa39.96■■■■□ 3.99
SMARCD1-203ENST00000547247 CUX1P39880 1505 aa39.86■■■■□ 3.97
SMARCD1-203ENST00000547247 WRNQ14191 1432 aaPredicted RBP eCLIP39.85■■■■□ 3.97
SMARCD1-203ENST00000547247 SYNJ1O43426 1573 aa39.68■■■■□ 3.94
SMARCD1-203ENST00000547247 TOP2BQ02880 1626 aa39.68■■■■□ 3.94
SMARCD1-203ENST00000547247 POLA1P09884 1462 aaPredicted RBP39.67■■■■□ 3.94
SMARCD1-203ENST00000547247 FGD5Q6ZNL6 1462 aa39.66■■■■□ 3.94
SMARCD1-203ENST00000547247 BIVM-ERCC5R4GMW8 1640 aa39.65■■■■□ 3.94
SMARCD1-203ENST00000547247 IFT140Q96RY7 1462 aa39.59■■■■□ 3.93
SMARCD1-203ENST00000547247 SOGA1O94964 1423 aa39.54■■■■□ 3.92
SMARCD1-203ENST00000547247 RAD54L2Q9Y4B4 1467 aa39.49■■■■□ 3.91
SMARCD1-203ENST00000547247 TARBP1Q13395 1621 aaKnown RBP39.47■■■■□ 3.91
SMARCD1-203ENST00000547247 ZNF608Q9ULD9 1512 aaPredicted RBP39.38■■■■□ 3.9
SMARCD1-203ENST00000547247 TRIM41Q8WV44 630 aa39.33■■■■□ 3.89
SMARCD1-203ENST00000547247 ABCA10Q8WWZ4 1543 aa39.3■■■■□ 3.88
SMARCD1-203ENST00000547247 EIF4G3O43432 1585 aaKnown RBP39.27■■■■□ 3.88
SMARCD1-203ENST00000547247 WDR97A6NE52 1622 aa39.26■■■■□ 3.88
SMARCD1-203ENST00000547247 TDRD9Q8NDG6 1382 aaKnown RBP39.24■■■■□ 3.87
SMARCD1-203ENST00000547247 AQRO60306 1485 aaKnown RBP eCLIP39.21■■■■□ 3.875e-9■■■■□ 24.1
SMARCD1-203ENST00000547247 CHIC1Q5VXU3 224 aa39.21■■■■□ 3.87
SMARCD1-203ENST00000547247 GAPVD1Q14C86 1478 aa39.09■■■■□ 3.85
SMARCD1-203ENST00000547247 ABCA5Q8WWZ7 1642 aa39.07■■■■□ 3.84
SMARCD1-203ENST00000547247 DNAJC5Q9H3Z4 198 aa39■■■■□ 3.83
SMARCD1-203ENST00000547247 GRIN2BQ13224 1484 aa39■■■■□ 3.83
SMARCD1-203ENST00000547247 KIF27Q86VH2 1401 aa38.98■■■■□ 3.83
SMARCD1-203ENST00000547247 PBRM1Q86U86 1689 aa38.93■■■■□ 3.82
SMARCD1-203ENST00000547247 SNAPC4Q5SXM2 1469 aa38.86■■■■□ 3.81
SMARCD1-203ENST00000547247 ERICH3Q5RHP9 1530 aa38.84■■■■□ 3.81
SMARCD1-203ENST00000547247 MAGI1Q96QZ7 1491 aaPredicted RBP38.83■■■■□ 3.81
SMARCD1-203ENST00000547247 CHD1O14646 1710 aa38.78■■■■□ 3.8
SMARCD1-203ENST00000547247 RUSC2Q8N2Y8 1516 aa38.77■■■■□ 3.8
SMARCD1-203ENST00000547247 IGF1RP08069 1367 aa38.75■■■■□ 3.79
SMARCD1-203ENST00000547247 OSCARQ8IYS5 282 aa38.74■■■■□ 3.79
SMARCD1-203ENST00000547247 FBLN2P98095 1184 aa38.68■■■■□ 3.78
SMARCD1-203ENST00000547247 SYNJ2O15056 1496 aa38.68■■■■□ 3.78
SMARCD1-203ENST00000547247 CHMP7Q8WUX9 453 aaPredicted RBP38.65■■■■□ 3.78
SMARCD1-203ENST00000547247 ADAMTS12P58397 1594 aa38.65■■■■□ 3.78
SMARCD1-203ENST00000547247 FHAD1B1AJZ9 1412 aa38.65■■■■□ 3.78
SMARCD1-203ENST00000547247 EEA1Q15075 1411 aa38.61■■■■□ 3.77
SMARCD1-203ENST00000547247 CUL7Q14999 1698 aa38.59■■■■□ 3.77
SMARCD1-203ENST00000547247 CARMIL1Q5VZK9 1371 aa38.54■■■■□ 3.76
SMARCD1-203ENST00000547247 FAM9AQ8IZU1 332 aaPredicted RBP38.5■■■■□ 3.75
SMARCD1-203ENST00000547247 CSRNP3Q8WYN3 585 aa38.5■■■■□ 3.75
SMARCD1-203ENST00000547247 GRIN2AQ12879 1464 aa38.49■■■■□ 3.75
SMARCD1-203ENST00000547247 RAPGEF2Q9Y4G8 1499 aa38.36■■■■□ 3.73
SMARCD1-203ENST00000547247 PRXQ9BXM0 1461 aa38.35■■■■□ 3.73
SMARCD1-203ENST00000547247 CLASP1Q7Z460 1538 aa38.3■■■■□ 3.72
SMARCD1-203ENST00000547247 NUP160Q12769 1436 aa38.29■■■■□ 3.72
SMARCD1-203ENST00000547247 CEP170Q5SW79 1584 aa38.26■■■■□ 3.72
SMARCD1-203ENST00000547247 RIMBP3CA6NJZ7 1639 aa38.19■■■■□ 3.7
SMARCD1-203ENST00000547247 RIMBP3BA6NNM3 1639 aa38.19■■■■□ 3.7
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms