RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	SUPT5H	O00267	1087 aa	Known RBP	13.79	□□□□□ -0.2
SNHG1-223	ENST00000545440	WDR97	A6NE52	1622 aa		13.79	□□□□□ -0.2
SNHG1-223	ENST00000545440	CUX1	P39880	1505 aa		13.77	□□□□□ -0.21
SNHG1-223	ENST00000545440	POLA2	Q14181	598 aa		13.77	□□□□□ -0.21
SNHG1-223	ENST00000545440	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.75	□□□□□ -0.21
SNHG1-223	ENST00000545440	FGD5	Q6ZNL6	1462 aa		13.74	□□□□□ -0.21
SNHG1-223	ENST00000545440	CHD1	O14646	1710 aa		13.74	□□□□□ -0.21
SNHG1-223	ENST00000545440	BIVM-ERCC5	R4GMW8	1640 aa		13.71	□□□□□ -0.22
SNHG1-223	ENST00000545440	PBRM1	Q86U86	1689 aa		13.69	□□□□□ -0.22
SNHG1-223	ENST00000545440	RAD54L2	Q9Y4B4	1467 aa		13.68	□□□□□ -0.22
SNHG1-223	ENST00000545440	SOGA1	O94964	1423 aa		13.67	□□□□□ -0.22
SNHG1-223	ENST00000545440	TOP2B	Q02880	1626 aa		13.67	□□□□□ -0.22
SNHG1-223	ENST00000545440	AQR	O60306	1485 aa	Known RBP eCLIP	13.66	□□□□□ -0.22	3e-14	■■■■■ 46.6
SNHG1-223	ENST00000545440	ABCA5	Q8WWZ7	1642 aa		13.65	□□□□□ -0.22
SNHG1-223	ENST00000545440	SYNJ1	O43426	1573 aa		13.63	□□□□□ -0.23
SNHG1-223	ENST00000545440	OSCAR	Q8IYS5	282 aa		13.63	□□□□□ -0.23
SNHG1-223	ENST00000545440	ABCB7	O75027	752 aa		13.62	□□□□□ -0.23
SNHG1-223	ENST00000545440	ABCA10	Q8WWZ4	1543 aa		13.62	□□□□□ -0.23
SNHG1-223	ENST00000545440	SPDYE4	A6NLX3	237 aa		13.61	□□□□□ -0.23
SNHG1-223	ENST00000545440	MAGI1	Q96QZ7	1491 aa	Predicted RBP	13.61	□□□□□ -0.23
SNHG1-223	ENST00000545440	WRN	Q14191	1432 aa	Predicted RBP eCLIP	13.59	□□□□□ -0.23
SNHG1-223	ENST00000545440	RIMBP3C	A6NJZ7	1639 aa		13.59	□□□□□ -0.23
SNHG1-223	ENST00000545440	RIMBP3B	A6NNM3	1639 aa		13.59	□□□□□ -0.23
SNHG1-223	ENST00000545440	RIMBP3	Q9UFD9	1639 aa		13.59	□□□□□ -0.23
SNHG1-223	ENST00000545440	GRIN2B	Q13224	1484 aa		13.59	□□□□□ -0.23
SNHG1-223	ENST00000545440	SNAPC4	Q5SXM2	1469 aa		13.59	□□□□□ -0.23
SNHG1-223	ENST00000545440	TDRD9	Q8NDG6	1382 aa	Known RBP	13.58	□□□□□ -0.23
SNHG1-223	ENST00000545440	GAPVD1	Q14C86	1478 aa		13.55	□□□□□ -0.24
SNHG1-223	ENST00000545440	CACNB1	Q02641	598 aa	Predicted RBP	13.54	□□□□□ -0.24
SNHG1-223	ENST00000545440	ARHGEF11	O15085	1522 aa		13.54	□□□□□ -0.24
SNHG1-223	ENST00000545440	MKRN4P	Q13434	485 aa	Predicted RBP	13.53	□□□□□ -0.24
SNHG1-223	ENST00000545440	FBXO3	Q9UK99	471 aa		13.53	□□□□□ -0.24
SNHG1-223	ENST00000545440	SYNJ2	O15056	1496 aa		13.53	□□□□□ -0.24
SNHG1-223	ENST00000545440	CLASP1	Q7Z460	1538 aa		13.53	□□□□□ -0.24
SNHG1-223	ENST00000545440	ADAMTS12	P58397	1594 aa		13.52	□□□□□ -0.25
SNHG1-223	ENST00000545440	DSG3	P32926	999 aa		13.49	□□□□□ -0.25
SNHG1-223	ENST00000545440	ERICH3	Q5RHP9	1530 aa		13.48	□□□□□ -0.25
SNHG1-223	ENST00000545440	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.47	□□□□□ -0.25
SNHG1-223	ENST00000545440	GRIN2A	Q12879	1464 aa		13.43	□□□□□ -0.26
SNHG1-223	ENST00000545440	CHMP7	Q8WUX9	453 aa	Predicted RBP	13.42	□□□□□ -0.26
SNHG1-223	ENST00000545440	TRIM41	Q8WV44	630 aa		13.42	□□□□□ -0.26
SNHG1-223	ENST00000545440	ARAP1	Q96P48	1450 aa		13.4	□□□□□ -0.26
SNHG1-223	ENST00000545440	CEP170	Q5SW79	1584 aa		13.4	□□□□□ -0.26
SNHG1-223	ENST00000545440	FHAD1	B1AJZ9	1412 aa		13.39	□□□□□ -0.27
SNHG1-223	ENST00000545440	CUL7	Q14999	1698 aa		13.39	□□□□□ -0.27
SNHG1-223	ENST00000545440	SHROOM2	Q13796	1616 aa		13.38	□□□□□ -0.27
SNHG1-223	ENST00000545440	NUP160	Q12769	1436 aa		13.38	□□□□□ -0.27
SNHG1-223	ENST00000545440	RUSC2	Q8N2Y8	1516 aa		13.34	□□□□□ -0.27
SNHG1-223	ENST00000545440	KIF27	Q86VH2	1401 aa		13.32	□□□□□ -0.28
SNHG1-223	ENST00000545440	ZNF692	Q9BU19	519 aa	Predicted RBP	13.32	□□□□□ -0.28
SNHG1-223	ENST00000545440	SPDYE2B	A6NHP3	402 aa		13.29	□□□□□ -0.28
SNHG1-223	ENST00000545440	SPDYE6	P0CI01	402 aa		13.29	□□□□□ -0.28
SNHG1-223	ENST00000545440	SPDYE2	Q495Y8	402 aa		13.29	□□□□□ -0.28
SNHG1-223	ENST00000545440	ERCC6L2	Q5T890	1561 aa		13.28	□□□□□ -0.28
SNHG1-223	ENST00000545440	CYB5RL	Q6IPT4	315 aa		13.27	□□□□□ -0.29
SNHG1-223	ENST00000545440	PROM2	Q8N271	834 aa		13.27	□□□□□ -0.29
SNHG1-223	ENST00000545440	RTN4	Q9NQC3	1192 aa	Known RBP	13.25	□□□□□ -0.29
SNHG1-223	ENST00000545440	IGF1R	P08069	1367 aa		13.22	□□□□□ -0.29
SNHG1-223	ENST00000545440	KIAA0586	Q9BVV6	1533 aa		13.18	□□□□□ -0.3
SNHG1-223	ENST00000545440	CTTNBP2	Q8WZ74	1663 aa		13.18	□□□□□ -0.3
SNHG1-223	ENST00000545440	PRG4	Q92954	1404 aa	Predicted RBP	13.17	□□□□□ -0.3
SNHG1-223	ENST00000545440	VASP	P50552	380 aa	Predicted RBP	13.16	□□□□□ -0.3
SNHG1-223	ENST00000545440	CARMIL1	Q5VZK9	1371 aa		13.16	□□□□□ -0.3
SNHG1-223	ENST00000545440	IQGAP2	Q13576	1575 aa		13.15	□□□□□ -0.3
SNHG1-223	ENST00000545440	STAG3	Q9UJ98	1225 aa		13.13	□□□□□ -0.31
SNHG1-223	ENST00000545440	RAPGEF2	Q9Y4G8	1499 aa		13.11	□□□□□ -0.31
SNHG1-223	ENST00000545440	JPH4	Q96JJ6	628 aa		13.11	□□□□□ -0.31
SNHG1-223	ENST00000545440	SSUH2	Q9Y2M2	353 aa		13.11	□□□□□ -0.31
SNHG1-223	ENST00000545440	KIF13A	Q9H1H9	1805 aa		13.11	□□□□□ -0.31
SNHG1-223	ENST00000545440	ADCY10	Q96PN6	1610 aa		13.1	□□□□□ -0.31
SNHG1-223	ENST00000545440	RBM42	Q9BTD8	480 aa	Known RBP	13.07	□□□□□ -0.32
SNHG1-223	ENST00000545440	UGGT2	Q9NYU1	1516 aa		13.06	□□□□□ -0.32
SNHG1-223	ENST00000545440	PLEKHG5	O94827	1062 aa		13.05	□□□□□ -0.32
SNHG1-223	ENST00000545440	MAPKBP1	O60336	1514 aa		13.04	□□□□□ -0.32
SNHG1-223	ENST00000545440	KIAA0556	O60303	1618 aa		13.04	□□□□□ -0.32
SNHG1-223	ENST00000545440	CARMIL2	Q6F5E8	1435 aa		13.04	□□□□□ -0.32
SNHG1-223	ENST00000545440	PRX	Q9BXM0	1461 aa		13.04	□□□□□ -0.32
SNHG1-223	ENST00000545440	DISP1	Q96F81	1524 aa		13.02	□□□□□ -0.33
SNHG1-223	ENST00000545440	KLHL34	Q8N239	644 aa		13	□□□□□ -0.33
SNHG1-223	ENST00000545440	DIP2B	Q9P265	1576 aa		12.99	□□□□□ -0.33
SNHG1-223	ENST00000545440	EEA1	Q15075	1411 aa		12.99	□□□□□ -0.33
SNHG1-223	ENST00000545440	TNIK	Q9UKE5	1360 aa		12.99	□□□□□ -0.33
SNHG1-223	ENST00000545440	PLCD3	Q8N3E9	789 aa		12.99	□□□□□ -0.33
SNHG1-223	ENST00000545440	PTPRG	P23470	1445 aa		12.96	□□□□□ -0.33
SNHG1-223	ENST00000545440	ABCC2	Q92887	1545 aa		12.96	□□□□□ -0.33
SNHG1-223	ENST00000545440	UHRF1BP1L	A0JNW5	1464 aa		12.96	□□□□□ -0.34
SNHG1-223	ENST00000545440	GOLGA3	Q08378	1498 aa		12.95	□□□□□ -0.34
SNHG1-223	ENST00000545440	ABCC10	Q5T3U5	1492 aa		12.94	□□□□□ -0.34
SNHG1-223	ENST00000545440	MIER1	Q8N108	512 aa		12.94	□□□□□ -0.34
SNHG1-223	ENST00000545440	KIF21B	O75037	1637 aa		12.94	□□□□□ -0.34
SNHG1-223	ENST00000545440	ZCCHC11	Q5TAX3	1644 aa	Known RBP	12.93	□□□□□ -0.34
SNHG1-223	ENST00000545440	TSPOAP1	O95153	1857 aa		12.92	□□□□□ -0.34
SNHG1-223	ENST00000545440	SAMD9	Q5K651	1589 aa		12.92	□□□□□ -0.34
SNHG1-223	ENST00000545440	UACA	Q9BZF9	1416 aa		12.91	□□□□□ -0.34
SNHG1-223	ENST00000545440	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.91	□□□□□ -0.34
SNHG1-223	ENST00000545440	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.91	□□□□□ -0.34
SNHG1-223	ENST00000545440	NPM1	P06748	294 aa	Known RBP eCLIP	12.9	□□□□□ -0.34
SNHG1-223	ENST00000545440	KDM5B	Q9UGL1	1544 aa		12.89	□□□□□ -0.35
SNHG1-223	ENST00000545440	AKT1S1	Q96B36	256 aa		12.89	□□□□□ -0.35
SNHG1-223	ENST00000545440	ABCA8	O94911	1581 aa		12.89	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 132.2 ms