RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 OSCARQ8IYS5 282 aa19.06■□□□□ 0.64
YBX3-213ENST00000542641 CHD1O14646 1710 aa19.04■□□□□ 0.64
YBX3-213ENST00000542641 EHMT2Q96KQ7 1210 aa18.99■□□□□ 0.63
YBX3-213ENST00000542641 NUP160Q12769 1436 aa18.96■□□□□ 0.63
YBX3-213ENST00000542641 KIF21BO75037 1637 aa18.96■□□□□ 0.63
YBX3-213ENST00000542641 CEP170Q5SW79 1584 aa18.93■□□□□ 0.62
YBX3-213ENST00000542641 GOLGA3Q08378 1498 aa18.92■□□□□ 0.62
YBX3-213ENST00000542641 UBTFP17480 764 aaKnown RBP18.92■□□□□ 0.62
YBX3-213ENST00000542641 KIAA0586Q9BVV6 1533 aa18.89■□□□□ 0.61
YBX3-213ENST00000542641 CLASP1Q7Z460 1538 aa18.86■□□□□ 0.61
YBX3-213ENST00000542641 LOC105371045A0A1W2PR82 267 aa18.85■□□□□ 0.61
YBX3-213ENST00000542641 JPH4Q96JJ6 628 aa18.84■□□□□ 0.61
YBX3-213ENST00000542641 IQGAP2Q13576 1575 aa18.81■□□□□ 0.6
YBX3-213ENST00000542641 CTTNBP2Q8WZ74 1663 aa18.79■□□□□ 0.6
YBX3-213ENST00000542641 RANGAP1P46060 587 aaPredicted RBP18.77■□□□□ 0.6
YBX3-213ENST00000542641 DNAJC5Q9H3Z4 198 aa18.77■□□□□ 0.6
YBX3-213ENST00000542641 TNIKQ9UKE5 1360 aa18.76■□□□□ 0.59
YBX3-213ENST00000542641 MSH5O43196 834 aa18.75■□□□□ 0.59
YBX3-213ENST00000542641 PRG4Q92954 1404 aaPredicted RBP18.74■□□□□ 0.59
YBX3-213ENST00000542641 SHROOM2Q13796 1616 aa18.74■□□□□ 0.59
YBX3-213ENST00000542641 UGGT2Q9NYU1 1516 aa18.72■□□□□ 0.59
YBX3-213ENST00000542641 CARMIL2Q6F5E8 1435 aa18.69■□□□□ 0.58
YBX3-213ENST00000542641 ARHGEF11O15085 1522 aa18.68■□□□□ 0.58
YBX3-213ENST00000542641 P3H3Q8IVL6 736 aa18.66■□□□□ 0.58
YBX3-213ENST00000542641 ERCC6L2Q5T890 1561 aa18.66■□□□□ 0.58
YBX3-213ENST00000542641 DISP1Q96F81 1524 aa18.65■□□□□ 0.58
YBX3-213ENST00000542641 TTBK1Q5TCY1 1321 aaPredicted RBP18.62■□□□□ 0.57
YBX3-213ENST00000542641 RIMBP3CA6NJZ7 1639 aa18.62■□□□□ 0.57
YBX3-213ENST00000542641 RIMBP3BA6NNM3 1639 aa18.62■□□□□ 0.57
YBX3-213ENST00000542641 RIMBP3Q9UFD9 1639 aa18.62■□□□□ 0.57
YBX3-213ENST00000542641 KIAA0556O60303 1618 aa18.61■□□□□ 0.57
YBX3-213ENST00000542641 CLIP1P30622 1438 aa18.61■□□□□ 0.57
YBX3-213ENST00000542641 SAMD9Q5K651 1589 aa18.59■□□□□ 0.57
YBX3-213ENST00000542641 EFCAB5A4FU69 1503 aa18.59■□□□□ 0.57
YBX3-213ENST00000542641 CEP162Q5TB80 1403 aa18.59■□□□□ 0.57
YBX3-213ENST00000542641 ARHGAP35Q9NRY4 1499 aa18.58■□□□□ 0.56
YBX3-213ENST00000542641 PTPRGP23470 1445 aa18.57■□□□□ 0.56
YBX3-213ENST00000542641 CYB5RLQ6IPT4 315 aa18.57■□□□□ 0.56
YBX3-213ENST00000542641 FHOD3Q2V2M9 1422 aa18.56■□□□□ 0.56
YBX3-213ENST00000542641 ARAP1Q96P48 1450 aa18.55■□□□□ 0.56
YBX3-213ENST00000542641 FMN1Q68DA7 1419 aa18.46■□□□□ 0.55
YBX3-213ENST00000542641 UACAQ9BZF9 1416 aa18.44■□□□□ 0.54
YBX3-213ENST00000542641 PLB1Q6P1J6 1458 aa18.44■□□□□ 0.54
YBX3-213ENST00000542641 ATP1B4Q9UN42 357 aaPredicted RBP18.41■□□□□ 0.54
YBX3-213ENST00000542641 UHRF1BP1LA0JNW5 1464 aa18.39■□□□□ 0.53
YBX3-213ENST00000542641 ABCA8O94911 1581 aa18.38■□□□□ 0.53
YBX3-213ENST00000542641 NPM1P06748 294 aaKnown RBP eCLIP18.37■□□□□ 0.53
YBX3-213ENST00000542641 ABCC2Q92887 1545 aa18.37■□□□□ 0.53
YBX3-213ENST00000542641 RAPGEF6Q8TEU7 1601 aa18.35■□□□□ 0.53
YBX3-213ENST00000542641 ADCY10Q96PN6 1610 aa18.35■□□□□ 0.53
YBX3-213ENST00000542641 ARID3CA6NKF2 412 aa18.35■□□□□ 0.53
YBX3-213ENST00000542641 VPS8Q8N3P4 1428 aa18.34■□□□□ 0.53
YBX3-213ENST00000542641 CASKIN1Q8WXD9 1431 aa18.34■□□□□ 0.53
YBX3-213ENST00000542641 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.32■□□□□ 0.52
YBX3-213ENST00000542641 HNRNPUL2Q1KMD3 747 aaKnown RBP18.32■□□□□ 0.52
YBX3-213ENST00000542641 NUP153P49790 1475 aaKnown RBP18.32■□□□□ 0.52
YBX3-213ENST00000542641 PCF11O94913 1555 aaKnown RBP18.3■□□□□ 0.52
YBX3-213ENST00000542641 FYCO1Q9BQS8 1478 aa18.3■□□□□ 0.52
YBX3-213ENST00000542641 HECW1Q76N89 1606 aa18.29■□□□□ 0.52
YBX3-213ENST00000542641 KDM5BQ9UGL1 1544 aa18.28■□□□□ 0.52
YBX3-213ENST00000542641 ATP10BO94823 1461 aa18.28■□□□□ 0.52
YBX3-213ENST00000542641 EPRSP07814 1512 aaKnown RBP18.26■□□□□ 0.51
YBX3-213ENST00000542641 ZCCHC11Q5TAX3 1644 aaKnown RBP18.23■□□□□ 0.51
YBX3-213ENST00000542641 CDK13Q14004 1512 aaKnown RBP18.23■□□□□ 0.51
YBX3-213ENST00000542641 CCDC18Q5T9S5 1454 aa18.22■□□□□ 0.51
YBX3-213ENST00000542641 APLP2Q06481 763 aa18.22■□□□□ 0.51
YBX3-213ENST00000542641 CDK11AQ9UQ88 783 aaPredicted RBP18.22■□□□□ 0.51
YBX3-213ENST00000542641 PLEKHD1A6NEE1 506 aa18.21■□□□□ 0.51
YBX3-213ENST00000542641 ASXL2Q76L83 1435 aa18.2■□□□□ 0.5
YBX3-213ENST00000542641 MAPKBP1O60336 1514 aa18.18■□□□□ 0.5
YBX3-213ENST00000542641 LRRIQ1Q96JM4 1722 aa18.16■□□□□ 0.5
YBX3-213ENST00000542641 KCNH8Q96L42 1107 aa18.15■□□□□ 0.5
YBX3-213ENST00000542641 WDR7Q9Y4E6 1490 aa18.14■□□□□ 0.5
YBX3-213ENST00000542641 MAP3K1Q13233 1512 aa18.12■□□□□ 0.49
YBX3-213ENST00000542641 MTUS2Q5JR59 1369 aa18.11■□□□□ 0.49
YBX3-213ENST00000542641 TIAM1Q13009 1591 aa18.11■□□□□ 0.49
YBX3-213ENST00000542641 TRHP20396 242 aaPredicted RBP18.1■□□□□ 0.49
YBX3-213ENST00000542641 KANK4Q5T7N3 995 aaPredicted RBP18.1■□□□□ 0.49
YBX3-213ENST00000542641 TROQ12816 1431 aaPredicted RBP18.09■□□□□ 0.49
YBX3-213ENST00000542641 FAM69CQ0P6D2 419 aa18.09■□□□□ 0.49
YBX3-213ENST00000542641 CFAP43Q8NDM7 1665 aa18.08■□□□□ 0.48
YBX3-213ENST00000542641 MAGI3Q5TCQ9 1506 aa18.08■□□□□ 0.48
YBX3-213ENST00000542641 ABCC10Q5T3U5 1492 aa18.07■□□□□ 0.48
YBX3-213ENST00000542641 LRRC9Q6ZRR7 1453 aa18.07■□□□□ 0.48
YBX3-213ENST00000542641 EHBP1L1Q8N3D4 1523 aa18.03■□□□□ 0.48
YBX3-213ENST00000542641 PPARGC1BQ86YN6 1023 aaKnown RBP18.02■□□□□ 0.48
YBX3-213ENST00000542641 DIP2BQ9P265 1576 aa18.02■□□□□ 0.48
YBX3-213ENST00000542641 KIF14Q15058 1648 aa18■□□□□ 0.47
YBX3-213ENST00000542641 GLI2P10070 1586 aa18■□□□□ 0.47
YBX3-213ENST00000542641 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.98■□□□□ 0.47
YBX3-213ENST00000542641 CD109Q6YHK3 1445 aa17.97■□□□□ 0.47
YBX3-213ENST00000542641 PPP4R3CPQ6ZMV5 832 aa17.96■□□□□ 0.47
YBX3-213ENST00000542641 NCOA2Q15596 1464 aa17.95■□□□□ 0.46
YBX3-213ENST00000542641 ABCA9Q8IUA7 1624 aa17.95■□□□□ 0.46
YBX3-213ENST00000542641 KIF13AQ9H1H9 1805 aa17.95■□□□□ 0.46
YBX3-213ENST00000542641 CCNB3Q8WWL7 1395 aa17.94■□□□□ 0.46
YBX3-213ENST00000542641 TTC37Q6PGP7 1564 aa17.94■□□□□ 0.46
YBX3-213ENST00000542641 SUPT6HQ7KZ85 1726 aaKnown RBP17.94■□□□□ 0.46
YBX3-213ENST00000542641 MAP3K4Q9Y6R4 1608 aa17.91■□□□□ 0.46
YBX3-213ENST00000542641 PLCH2O75038 1416 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms