RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 NISCHQ9Y2I1 1504 aa27.37■■□□□ 1.97
YBX3-213ENST00000542641 AEBP2Q6ZN18 517 aaPredicted RBP25.71■■□□□ 1.71
YBX3-213ENST00000542641 CHIC1Q5VXU3 224 aa25.12■■□□□ 1.61
YBX3-213ENST00000542641 CCDC180Q9P1Z9 1646 aa24.11■■□□□ 1.45
YBX3-213ENST00000542641 ABCC9O60706 1549 aa23.35■■□□□ 1.33
YBX3-213ENST00000542641 DCAF8L2P0C7V8 631 aa22.86■■□□□ 1.25
YBX3-213ENST00000542641 ZCCHC6Q5VYS8 1495 aaKnown RBP22.85■■□□□ 1.25
YBX3-213ENST00000542641 NACADO15069 1562 aa22.63■■□□□ 1.21
YBX3-213ENST00000542641 DCAF1Q9Y4B6 1507 aa22.63■■□□□ 1.21
YBX3-213ENST00000542641 MYO15BQ96JP2 1530 aa22.6■■□□□ 1.21
YBX3-213ENST00000542641 RB1CC1Q8TDY2 1594 aa22.58■■□□□ 1.2
YBX3-213ENST00000542641 SCRIBQ14160 1630 aa22.09■■□□□ 1.13
YBX3-213ENST00000542641 PHF23Q9BUL5 403 aaPredicted RBP22.06■■□□□ 1.12
YBX3-213ENST00000542641 UNC13AQ9UPW8 1703 aa22■■□□□ 1.11
YBX3-213ENST00000542641 PABPN1Q86U42 306 aaKnown RBP eCLIP21.94■■□□□ 1.15e-7■□□□□ 10.2
YBX3-213ENST00000542641 SHROOM4Q9ULL8 1493 aa21.92■■□□□ 1.1
YBX3-213ENST00000542641 SENP3Q9H4L4 574 aaPredicted RBP21.88■■□□□ 1.09
YBX3-213ENST00000542641 BICRAQ9NZM4 1560 aa21.86■■□□□ 1.09
YBX3-213ENST00000542641 CECR2Q9BXF3 1484 aa21.3■■□□□ 1
YBX3-213ENST00000542641 EIF4G1Q04637 1599 aaKnown RBP21.27■■□□□ 1
YBX3-213ENST00000542641 BAZ1AQ9NRL2 1556 aaPredicted RBP21.19■□□□□ 0.98
YBX3-213ENST00000542641 DNAJC5BQ9UF47 199 aa21.14■□□□□ 0.97
YBX3-213ENST00000542641 SMARCA4P51532 1647 aa21.14■□□□□ 0.97
YBX3-213ENST00000542641 MROH2BQ7Z745 1585 aa21.1■□□□□ 0.97
YBX3-213ENST00000542641 CC2D2AQ9P2K1 1620 aa21.1■□□□□ 0.97
YBX3-213ENST00000542641 RSF1Q96T23 1441 aaPredicted RBP21.02■□□□□ 0.96
YBX3-213ENST00000542641 ATAD2BQ9ULI0 1458 aa20.97■□□□□ 0.95
YBX3-213ENST00000542641 SMARCA2P51531 1590 aa20.94■□□□□ 0.94
YBX3-213ENST00000542641 PEG3Q9GZU2 1588 aa20.91■□□□□ 0.94
YBX3-213ENST00000542641 NCAPD3P42695 1498 aa20.9■□□□□ 0.94
YBX3-213ENST00000542641 WIZO95785 1651 aa20.88■□□□□ 0.93
YBX3-213ENST00000542641 SUPT5HO00267 1087 aaKnown RBP20.83■□□□□ 0.93
YBX3-213ENST00000542641 BAZ1BQ9UIG0 1483 aaKnown RBP20.82■□□□□ 0.92
YBX3-213ENST00000542641 HMGXB3Q12766 1538 aa20.79■□□□□ 0.92
YBX3-213ENST00000542641 TOP2AP11388 1531 aaKnown RBP20.68■□□□□ 0.9
YBX3-213ENST00000542641 CCDC88BA6NC98 1476 aa20.47■□□□□ 0.87
YBX3-213ENST00000542641 PLPPR3Q6T4P5 718 aa20.41■□□□□ 0.86
YBX3-213ENST00000542641 CADPSQ9ULU8 1353 aa20.34■□□□□ 0.85
YBX3-213ENST00000542641 NESP48681 1621 aa20.3■□□□□ 0.84
YBX3-213ENST00000542641 LAMC3Q9Y6N6 1575 aa20.27■□□□□ 0.84
YBX3-213ENST00000542641 CFTRP13569 1480 aa20.27■□□□□ 0.84
YBX3-213ENST00000542641 FOXD1Q16676 465 aa20.27■□□□□ 0.84
YBX3-213ENST00000542641 PDS5BQ9NTI5 1447 aa20.18■□□□□ 0.82
YBX3-213ENST00000542641 ERCC6Q03468 1493 aa20.11■□□□□ 0.81
YBX3-213ENST00000542641 FANCD2Q9BXW9 1451 aa20.1■□□□□ 0.81
YBX3-213ENST00000542641 PRDM2Q13029 1718 aa20.04■□□□□ 0.8
YBX3-213ENST00000542641 CEP164Q9UPV0 1460 aa20.02■□□□□ 0.8
YBX3-213ENST00000542641 KIF21AQ7Z4S6 1674 aa20.01■□□□□ 0.79
YBX3-213ENST00000542641 MRC2Q9UBG0 1479 aa19.92■□□□□ 0.78
YBX3-213ENST00000542641 THOC2Q8NI27 1593 aaKnown RBP19.86■□□□□ 0.77
YBX3-213ENST00000542641 URB2Q14146 1524 aaKnown RBP19.86■□□□□ 0.77
YBX3-213ENST00000542641 ABCC8Q09428 1581 aa19.83■□□□□ 0.76
YBX3-213ENST00000542641 WDR62O43379 1518 aa19.81■□□□□ 0.76
YBX3-213ENST00000542641 WRNQ14191 1432 aaPredicted RBP eCLIP19.81■□□□□ 0.76
YBX3-213ENST00000542641 TOPBP1Q92547 1522 aa19.79■□□□□ 0.76
YBX3-213ENST00000542641 DNMBPQ6XZF7 1577 aa19.78■□□□□ 0.76
YBX3-213ENST00000542641 CUX1P39880 1505 aa19.77■□□□□ 0.76
YBX3-213ENST00000542641 CUX2O14529 1486 aa19.73■□□□□ 0.75
YBX3-213ENST00000542641 SYNJ1O43426 1573 aa19.7■□□□□ 0.74
YBX3-213ENST00000542641 TOP2BQ02880 1626 aa19.69■□□□□ 0.74
YBX3-213ENST00000542641 FGD5Q6ZNL6 1462 aa19.67■□□□□ 0.74
YBX3-213ENST00000542641 POLA1P09884 1462 aaPredicted RBP19.66■□□□□ 0.74
YBX3-213ENST00000542641 TRIM41Q8WV44 630 aa19.65■□□□□ 0.74
YBX3-213ENST00000542641 BIVM-ERCC5R4GMW8 1640 aa19.65■□□□□ 0.74
YBX3-213ENST00000542641 SOGA1O94964 1423 aa19.62■□□□□ 0.73
YBX3-213ENST00000542641 IFT140Q96RY7 1462 aa19.59■□□□□ 0.73
YBX3-213ENST00000542641 RAD54L2Q9Y4B4 1467 aa19.59■□□□□ 0.73
YBX3-213ENST00000542641 TARBP1Q13395 1621 aaKnown RBP19.52■□□□□ 0.72
YBX3-213ENST00000542641 TDRD9Q8NDG6 1382 aaKnown RBP19.47■□□□□ 0.71
YBX3-213ENST00000542641 ABCA10Q8WWZ4 1543 aa19.47■□□□□ 0.71
YBX3-213ENST00000542641 ZNF608Q9ULD9 1512 aaPredicted RBP19.47■□□□□ 0.71
YBX3-213ENST00000542641 PPP6R1Q9UPN7 881 aa19.46■□□□□ 0.71
YBX3-213ENST00000542641 ADRA2BP18089 450 aa19.45■□□□□ 0.7
YBX3-213ENST00000542641 AQRO60306 1485 aaKnown RBP eCLIP19.44■□□□□ 0.75e-7■■■■■ 28.1
YBX3-213ENST00000542641 WDR97A6NE52 1622 aa19.4■□□□□ 0.7
YBX3-213ENST00000542641 GAPVD1Q14C86 1478 aa19.38■□□□□ 0.69
YBX3-213ENST00000542641 KIF27Q86VH2 1401 aa19.38■□□□□ 0.69
YBX3-213ENST00000542641 EIF4G3O43432 1585 aaKnown RBP19.37■□□□□ 0.69
YBX3-213ENST00000542641 ABCA5Q8WWZ7 1642 aa19.33■□□□□ 0.69
YBX3-213ENST00000542641 GRIN2BQ13224 1484 aa19.32■□□□□ 0.68
YBX3-213ENST00000542641 RUSC2Q8N2Y8 1516 aa19.3■□□□□ 0.68
YBX3-213ENST00000542641 FAM9AQ8IZU1 332 aaPredicted RBP19.26■□□□□ 0.67
YBX3-213ENST00000542641 IGF1RP08069 1367 aa19.26■□□□□ 0.67
YBX3-213ENST00000542641 ERICH3Q5RHP9 1530 aa19.25■□□□□ 0.67
YBX3-213ENST00000542641 SNAPC4Q5SXM2 1469 aa19.24■□□□□ 0.67
YBX3-213ENST00000542641 PBRM1Q86U86 1689 aa19.24■□□□□ 0.67
YBX3-213ENST00000542641 EEA1Q15075 1411 aa19.23■□□□□ 0.67
YBX3-213ENST00000542641 MAGI1Q96QZ7 1491 aaPredicted RBP19.22■□□□□ 0.67
YBX3-213ENST00000542641 CSRNP3Q8WYN3 585 aa19.21■□□□□ 0.67
YBX3-213ENST00000542641 FBLN2P98095 1184 aa19.2■□□□□ 0.66
YBX3-213ENST00000542641 CHMP7Q8WUX9 453 aaPredicted RBP19.19■□□□□ 0.66
YBX3-213ENST00000542641 FHAD1B1AJZ9 1412 aa19.17■□□□□ 0.66
YBX3-213ENST00000542641 CARMIL1Q5VZK9 1371 aa19.16■□□□□ 0.66
YBX3-213ENST00000542641 SYNJ2O15056 1496 aa19.15■□□□□ 0.66
YBX3-213ENST00000542641 PIAS4Q8N2W9 510 aaPredicted RBP19.14■□□□□ 0.65
YBX3-213ENST00000542641 ADAMTS12P58397 1594 aa19.13■□□□□ 0.65
YBX3-213ENST00000542641 CUL7Q14999 1698 aa19.12■□□□□ 0.65
YBX3-213ENST00000542641 PRXQ9BXM0 1461 aa19.07■□□□□ 0.64
YBX3-213ENST00000542641 GRIN2AQ12879 1464 aa19.06■□□□□ 0.64
YBX3-213ENST00000542641 RAPGEF2Q9Y4G8 1499 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms