RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 FYCO1Q9BQS8 1478 aa14.87□□□□□ -0.03
SS18-205ENST00000542420 PBRM1Q86U86 1689 aa14.87□□□□□ -0.03
SS18-205ENST00000542420 GAPVD1Q14C86 1478 aa14.87□□□□□ -0.03
SS18-205ENST00000542420 SAMD9Q5K651 1589 aa14.86□□□□□ -0.03
SS18-205ENST00000542420 CLSPNQ9HAW4 1339 aa14.86□□□□□ -0.03
SS18-205ENST00000542420 MRC2Q9UBG0 1479 aa14.85□□□□□ -0.03
SS18-205ENST00000542420 THOC2Q8NI27 1593 aaKnown RBP14.85□□□□□ -0.03
SS18-205ENST00000542420 PCF11O94913 1555 aaKnown RBP14.83□□□□□ -0.04
SS18-205ENST00000542420 CASKIN1Q8WXD9 1431 aa14.82□□□□□ -0.04
SS18-205ENST00000542420 LRRC9Q6ZRR7 1453 aa14.81□□□□□ -0.04
SS18-205ENST00000542420 WDR62O43379 1518 aa14.8□□□□□ -0.04
SS18-205ENST00000542420 FMN1Q68DA7 1419 aa14.8□□□□□ -0.04
SS18-205ENST00000542420 MYT1Q01538 1121 aa14.78□□□□□ -0.04
SS18-205ENST00000542420 TTBK1Q5TCY1 1321 aaPredicted RBP14.78□□□□□ -0.04
SS18-205ENST00000542420 CCNB3Q8WWL7 1395 aa14.78□□□□□ -0.04
SS18-205ENST00000542420 ADAMTS12P58397 1594 aa14.77□□□□□ -0.04
SS18-205ENST00000542420 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.76□□□□□ -0.05
SS18-205ENST00000542420 KANK4Q5T7N3 995 aaPredicted RBP14.76□□□□□ -0.05
SS18-205ENST00000542420 IFT140Q96RY7 1462 aa14.76□□□□□ -0.05
SS18-205ENST00000542420 RANGAP1P46060 587 aaPredicted RBP14.75□□□□□ -0.05
SS18-205ENST00000542420 SNAPC4Q5SXM2 1469 aa14.73□□□□□ -0.05
SS18-205ENST00000542420 GRIN2BQ13224 1484 aa14.72□□□□□ -0.05
SS18-205ENST00000542420 SCAF1Q9H7N4 1312 aaKnown RBP14.72□□□□□ -0.05
SS18-205ENST00000542420 HNRNPUL2Q1KMD3 747 aaKnown RBP14.7□□□□□ -0.06
SS18-205ENST00000542420 TDRD9Q8NDG6 1382 aaKnown RBP14.7□□□□□ -0.06
SS18-205ENST00000542420 FHOD3Q2V2M9 1422 aa14.7□□□□□ -0.06
SS18-205ENST00000542420 IQGAP2Q13576 1575 aa14.69□□□□□ -0.06
SS18-205ENST00000542420 CCDC18Q5T9S5 1454 aa14.67□□□□□ -0.06
SS18-205ENST00000542420 LRRIQ1Q96JM4 1722 aa14.66□□□□□ -0.06
SS18-205ENST00000542420 DHX57Q6P158 1386 aaKnown RBP14.66□□□□□ -0.06
SS18-205ENST00000542420 UGGT2Q9NYU1 1516 aa14.66□□□□□ -0.06
SS18-205ENST00000542420 EHBP1L1Q8N3D4 1523 aa14.65□□□□□ -0.06
SS18-205ENST00000542420 HECW1Q76N89 1606 aa14.65□□□□□ -0.06
SS18-205ENST00000542420 SUPT6HQ7KZ85 1726 aaKnown RBP14.64□□□□□ -0.07
SS18-205ENST00000542420 DNAJC5BQ9UF47 199 aa14.63□□□□□ -0.07
SS18-205ENST00000542420 PHLDB1Q86UU1 1377 aa14.61□□□□□ -0.07
SS18-205ENST00000542420 EIF4G3O43432 1585 aaKnown RBP14.61□□□□□ -0.07
SS18-205ENST00000542420 ARHGEF11O15085 1522 aa14.59□□□□□ -0.07
SS18-205ENST00000542420 MAGI1Q96QZ7 1491 aaPredicted RBP14.59□□□□□ -0.07
SS18-205ENST00000542420 ZNF316A6NFI3 1004 aaPredicted RBP14.59□□□□□ -0.07
SS18-205ENST00000542420 KIAA0586Q9BVV6 1533 aa14.58□□□□□ -0.08
SS18-205ENST00000542420 SETD5Q9C0A6 1442 aa14.57□□□□□ -0.08
SS18-205ENST00000542420 FGD6Q6ZV73 1430 aa14.55□□□□□ -0.08
SS18-205ENST00000542420 KIAA0556O60303 1618 aa14.54□□□□□ -0.08
SS18-205ENST00000542420 GRIN2AQ12879 1464 aa14.53□□□□□ -0.08
SS18-205ENST00000542420 DIEXFQ68CQ4 756 aaKnown RBP14.53□□□□□ -0.08
SS18-205ENST00000542420 MTUS2Q5JR59 1369 aa14.52□□□□□ -0.08
SS18-205ENST00000542420 RAB3GAP2Q9H2M9 1393 aa14.52□□□□□ -0.08
SS18-205ENST00000542420 ERCC6Q03468 1493 aa14.52□□□□□ -0.09
SS18-205ENST00000542420 MYOM3Q5VTT5 1437 aa14.52□□□□□ -0.09
SS18-205ENST00000542420 ZNF608Q9ULD9 1512 aaPredicted RBP14.52□□□□□ -0.09
SS18-205ENST00000542420 TCOF1Q13428 1488 aaKnown RBP14.51□□□□□ -0.09
SS18-205ENST00000542420 NCOA2Q15596 1464 aa14.51□□□□□ -0.09
SS18-205ENST00000542420 P3H3Q8IVL6 736 aa14.5□□□□□ -0.09
SS18-205ENST00000542420 MAPKBP1O60336 1514 aa14.5□□□□□ -0.09
SS18-205ENST00000542420 SYNJ2O15056 1496 aa14.49□□□□□ -0.09
SS18-205ENST00000542420 EPRSP07814 1512 aaKnown RBP14.49□□□□□ -0.09
SS18-205ENST00000542420 PTPN23Q9H3S7 1636 aa14.49□□□□□ -0.09
SS18-205ENST00000542420 AKNAQ7Z591 1439 aa14.48□□□□□ -0.09
SS18-205ENST00000542420 TIMELESSQ9UNS1 1208 aa14.48□□□□□ -0.09
SS18-205ENST00000542420 GCC2Q8IWJ2 1684 aa14.47□□□□□ -0.09
SS18-205ENST00000542420 MIA2Q96PC5 1412 aa14.47□□□□□ -0.09
SS18-205ENST00000542420 RAPGEF6Q8TEU7 1601 aa14.47□□□□□ -0.09
SS18-205ENST00000542420 DISP1Q96F81 1524 aa14.47□□□□□ -0.09
SS18-205ENST00000542420 ACIN1Q9UKV3 1341 aaKnown RBP14.46□□□□□ -0.09
SS18-205ENST00000542420 HFM1A2PYH4 1435 aa14.45□□□□□ -0.1
SS18-205ENST00000542420 MAGI3Q5TCQ9 1506 aa14.45□□□□□ -0.1
SS18-205ENST00000542420 NUP160Q12769 1436 aa14.44□□□□□ -0.1
SS18-205ENST00000542420 CEP170Q5SW79 1584 aa14.42□□□□□ -0.1
SS18-205ENST00000542420 ADCY10Q96PN6 1610 aa14.42□□□□□ -0.1
SS18-205ENST00000542420 ATP1B4Q9UN42 357 aaPredicted RBP14.41□□□□□ -0.1
SS18-205ENST00000542420 FAM50AQ14320 339 aaKnown RBP14.4□□□□□ -0.1
SS18-205ENST00000542420 ITSN2Q9NZM3 1697 aa14.39□□□□□ -0.11
SS18-205ENST00000542420 UACAQ9BZF9 1416 aa14.38□□□□□ -0.11
SS18-205ENST00000542420 CARMIL2Q6F5E8 1435 aa14.36□□□□□ -0.11
SS18-205ENST00000542420 NUP153P49790 1475 aaKnown RBP14.36□□□□□ -0.11
SS18-205ENST00000542420 CDK13Q14004 1512 aaKnown RBP14.35□□□□□ -0.11
SS18-205ENST00000542420 NAIPQ13075 1403 aa14.35□□□□□ -0.11
SS18-205ENST00000542420 DNMT1P26358 1616 aaKnown RBP14.34□□□□□ -0.11
SS18-205ENST00000542420 ITGAEP38570 1179 aa14.33□□□□□ -0.11
SS18-205ENST00000542420 CENPBP07199 599 aaPredicted RBP14.32□□□□□ -0.12
SS18-205ENST00000542420 PTPRKQ15262 1439 aa14.32□□□□□ -0.12
SS18-205ENST00000542420 ROCK1Q13464 1354 aa14.31□□□□□ -0.12
SS18-205ENST00000542420 ABCA8O94911 1581 aa14.31□□□□□ -0.12
SS18-205ENST00000542420 CDK11AQ9UQ88 783 aaPredicted RBP14.31□□□□□ -0.12
SS18-205ENST00000542420 TROQ12816 1431 aaPredicted RBP14.3□□□□□ -0.12
SS18-205ENST00000542420 ADGBQ8N7X0 1667 aa14.3□□□□□ -0.12
SS18-205ENST00000542420 CHMP7Q8WUX9 453 aaPredicted RBP14.29□□□□□ -0.12
SS18-205ENST00000542420 CROCC2H7BZ55 1655 aa14.27□□□□□ -0.12
SS18-205ENST00000542420 SHROOM2Q13796 1616 aa14.26□□□□□ -0.13
SS18-205ENST00000542420 DAPK1P53355 1430 aa14.23□□□□□ -0.13
SS18-205ENST00000542420 CHD1O14646 1710 aa14.23□□□□□ -0.13
SS18-205ENST00000542420 KIF14Q15058 1648 aa14.22□□□□□ -0.13
SS18-205ENST00000542420 ADGRL2O95490 1459 aa14.22□□□□□ -0.13
SS18-205ENST00000542420 JPH4Q96JJ6 628 aa14.2□□□□□ -0.14
SS18-205ENST00000542420 CDC42BPAQ5VT25 1732 aa14.2□□□□□ -0.14
SS18-205ENST00000542420 PLB1Q6P1J6 1458 aa14.19□□□□□ -0.14
SS18-205ENST00000542420 SHANK2Q9UPX8 1470 aa14.19□□□□□ -0.14
SS18-205ENST00000542420 ABCC5O15440 1437 aa14.19□□□□□ -0.14
SS18-205ENST00000542420 CAMSAP2Q08AD1 1489 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms