RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 NISCHQ9Y2I1 1504 aa21.46■■□□□ 1.03
SS18-205ENST00000542420 CCDC180Q9P1Z9 1646 aa18.7■□□□□ 0.58
SS18-205ENST00000542420 ZCCHC6Q5VYS8 1495 aaKnown RBP18.15■□□□□ 0.5
SS18-205ENST00000542420 DCAF1Q9Y4B6 1507 aa17.91■□□□□ 0.46
SS18-205ENST00000542420 MYO15BQ96JP2 1530 aa17.56■□□□□ 0.4
SS18-205ENST00000542420 SHROOM4Q9ULL8 1493 aa17.48■□□□□ 0.39
SS18-205ENST00000542420 NACADO15069 1562 aa17.23■□□□□ 0.35
SS18-205ENST00000542420 DCAF8L2P0C7V8 631 aa17.2■□□□□ 0.34
SS18-205ENST00000542420 ABCC9O60706 1549 aa17.1■□□□□ 0.33
SS18-205ENST00000542420 SUPT5HO00267 1087 aaKnown RBP17.04■□□□□ 0.32
SS18-205ENST00000542420 SCRIBQ14160 1630 aa17■□□□□ 0.31
SS18-205ENST00000542420 RB1CC1Q8TDY2 1594 aa16.94■□□□□ 0.3
SS18-205ENST00000542420 RSF1Q96T23 1441 aaPredicted RBP16.75■□□□□ 0.27
SS18-205ENST00000542420 CHIC1Q5VXU3 224 aa16.68■□□□□ 0.26
SS18-205ENST00000542420 UNC13AQ9UPW8 1703 aa16.65■□□□□ 0.26
SS18-205ENST00000542420 BAZ1AQ9NRL2 1556 aaPredicted RBP16.58■□□□□ 0.24
SS18-205ENST00000542420 MROH2BQ7Z745 1585 aa16.52■□□□□ 0.23
SS18-205ENST00000542420 CECR2Q9BXF3 1484 aa16.51■□□□□ 0.23
SS18-205ENST00000542420 WIZO95785 1651 aa16.43■□□□□ 0.22
SS18-205ENST00000542420 SMARCA4P51532 1647 aa16.43■□□□□ 0.22
SS18-205ENST00000542420 BICRAQ9NZM4 1560 aa16.37■□□□□ 0.21
SS18-205ENST00000542420 TOP2AP11388 1531 aaKnown RBP16.36■□□□□ 0.21
SS18-205ENST00000542420 PEG3Q9GZU2 1588 aa16.31■□□□□ 0.2
SS18-205ENST00000542420 EIF4G1Q04637 1599 aaKnown RBP16.3■□□□□ 0.2
SS18-205ENST00000542420 SMARCA2P51531 1590 aa16.19■□□□□ 0.18
SS18-205ENST00000542420 TRIM41Q8WV44 630 aa16.11■□□□□ 0.17
SS18-205ENST00000542420 CCDC88BA6NC98 1476 aa16.09■□□□□ 0.17
SS18-205ENST00000542420 ATAD2BQ9ULI0 1458 aa15.99■□□□□ 0.15
SS18-205ENST00000542420 PABPN1Q86U42 306 aaKnown RBP eCLIP15.94■□□□□ 0.14
SS18-205ENST00000542420 BAZ1BQ9UIG0 1483 aaKnown RBP15.92■□□□□ 0.14
SS18-205ENST00000542420 HMGXB3Q12766 1538 aa15.92■□□□□ 0.14
SS18-205ENST00000542420 LOC105371045A0A1W2PR82 267 aa15.91■□□□□ 0.14
SS18-205ENST00000542420 EEA1Q15075 1411 aa15.9■□□□□ 0.14
SS18-205ENST00000542420 ABCC8Q09428 1581 aa15.84■□□□□ 0.13
SS18-205ENST00000542420 NCAPD3P42695 1498 aa15.83■□□□□ 0.13
SS18-205ENST00000542420 WRNQ14191 1432 aaPredicted RBP eCLIP15.76■□□□□ 0.11
SS18-205ENST00000542420 PRDM2Q13029 1718 aa15.74■□□□□ 0.11
SS18-205ENST00000542420 TRIM26Q12899 539 aaPredicted RBP15.73■□□□□ 0.11
SS18-205ENST00000542420 HRCP23327 699 aa15.72■□□□□ 0.11
SS18-205ENST00000542420 BIVM-ERCC5R4GMW8 1640 aa15.71■□□□□ 0.11
SS18-205ENST00000542420 SYNJ1O43426 1573 aa15.69■□□□□ 0.1
SS18-205ENST00000542420 TOP2BQ02880 1626 aa15.68■□□□□ 0.1
SS18-205ENST00000542420 PCGF6Q9BYE7 350 aa15.67■□□□□ 0.1
SS18-205ENST00000542420 KIF21BO75037 1637 aa15.67■□□□□ 0.1
SS18-205ENST00000542420 FAM9AQ8IZU1 332 aaPredicted RBP15.66■□□□□ 0.1
SS18-205ENST00000542420 TNIKQ9UKE5 1360 aa15.64■□□□□ 0.09
SS18-205ENST00000542420 GOLGA3Q08378 1498 aa15.61■□□□□ 0.09
SS18-205ENST00000542420 SOGA1O94964 1423 aa15.6■□□□□ 0.09
SS18-205ENST00000542420 CFTRP13569 1480 aa15.58■□□□□ 0.08
SS18-205ENST00000542420 CEP164Q9UPV0 1460 aa15.58■□□□□ 0.08
SS18-205ENST00000542420 CSRNP3Q8WYN3 585 aa15.57■□□□□ 0.08
SS18-205ENST00000542420 CEP162Q5TB80 1403 aa15.52■□□□□ 0.07
SS18-205ENST00000542420 RUSC2Q8N2Y8 1516 aa15.51■□□□□ 0.07
SS18-205ENST00000542420 ERICH3Q5RHP9 1530 aa15.49■□□□□ 0.07
SS18-205ENST00000542420 CC2D2AQ9P2K1 1620 aa15.46■□□□□ 0.07
SS18-205ENST00000542420 ZEB1P37275 1124 aaPredicted RBP15.44■□□□□ 0.06
SS18-205ENST00000542420 CUX1P39880 1505 aa15.44■□□□□ 0.06
SS18-205ENST00000542420 CADPSQ9ULU8 1353 aa15.39■□□□□ 0.05
SS18-205ENST00000542420 PRXQ9BXM0 1461 aa15.37■□□□□ 0.05
SS18-205ENST00000542420 KIF27Q86VH2 1401 aa15.34■□□□□ 0.05
SS18-205ENST00000542420 UBTFP17480 764 aaKnown RBP15.32■□□□□ 0.04
SS18-205ENST00000542420 RAPGEF2Q9Y4G8 1499 aa15.32■□□□□ 0.04
SS18-205ENST00000542420 CLIP1P30622 1438 aa15.3■□□□□ 0.04
SS18-205ENST00000542420 AEBP2Q6ZN18 517 aaPredicted RBP15.3■□□□□ 0.04
SS18-205ENST00000542420 PELP1Q8IZL8 1130 aaKnown RBP15.29■□□□□ 0.04
SS18-205ENST00000542420 VPS8Q8N3P4 1428 aa15.29■□□□□ 0.04
SS18-205ENST00000542420 EHMT2Q96KQ7 1210 aa15.28■□□□□ 0.04
SS18-205ENST00000542420 LAMC3Q9Y6N6 1575 aa15.28■□□□□ 0.04
SS18-205ENST00000542420 DNMBPQ6XZF7 1577 aa15.26■□□□□ 0.03
SS18-205ENST00000542420 FANCD2Q9BXW9 1451 aa15.22■□□□□ 0.03
SS18-205ENST00000542420 FGD5Q6ZNL6 1462 aa15.19■□□□□ 0.02
SS18-205ENST00000542420 ABCA10Q8WWZ4 1543 aa15.15■□□□□ 0.02
SS18-205ENST00000542420 WDR97A6NE52 1622 aa15.15■□□□□ 0.02
SS18-205ENST00000542420 CUX2O14529 1486 aa15.15■□□□□ 0.02
SS18-205ENST00000542420 CUL7Q14999 1698 aa15.14■□□□□ 0.01
SS18-205ENST00000542420 ARAP1Q96P48 1450 aa15.13■□□□□ 0.01
SS18-205ENST00000542420 TOPBP1Q92547 1522 aa15.13■□□□□ 0.01
SS18-205ENST00000542420 IGF1RP08069 1367 aa15.1■□□□□ 0.01
SS18-205ENST00000542420 MAP3K1Q13233 1512 aa15.09■□□□□ 0.01
SS18-205ENST00000542420 POLA1P09884 1462 aaPredicted RBP15.06■□□□□ 0
SS18-205ENST00000542420 PPARGC1BQ86YN6 1023 aaKnown RBP15.06■□□□□ 0
SS18-205ENST00000542420 PDS5BQ9NTI5 1447 aa15.06■□□□□ 0
SS18-205ENST00000542420 APLP2Q06481 763 aa15.05■□□□□ -0
SS18-205ENST00000542420 CARMIL1Q5VZK9 1371 aa15.04■□□□□ -0
SS18-205ENST00000542420 ARHGAP35Q9NRY4 1499 aa15.04■□□□□ -0
SS18-205ENST00000542420 CTTNBP2Q8WZ74 1663 aa15.04■□□□□ -0
SS18-205ENST00000542420 ABCA5Q8WWZ7 1642 aa15.03■□□□□ -0
SS18-205ENST00000542420 EFCAB5A4FU69 1503 aa15.02□□□□□ -0.01
SS18-205ENST00000542420 NESP48681 1621 aa15.01□□□□□ -0.01
SS18-205ENST00000542420 URB2Q14146 1524 aaKnown RBP15□□□□□ -0.01
SS18-205ENST00000542420 KIF21AQ7Z4S6 1674 aa14.99□□□□□ -0.01
SS18-205ENST00000542420 CFAP43Q8NDM7 1665 aa14.96□□□□□ -0.01
SS18-205ENST00000542420 FHAD1B1AJZ9 1412 aa14.95□□□□□ -0.02
SS18-205ENST00000542420 CCER1Q8TC90 406 aaPredicted RBP14.94□□□□□ -0.02
SS18-205ENST00000542420 RRBP1Q9P2E9 1410 aaKnown RBP14.94□□□□□ -0.02
SS18-205ENST00000542420 TIAM1Q13009 1591 aa14.93□□□□□ -0.02
SS18-205ENST00000542420 AQRO60306 1485 aaKnown RBP eCLIP14.93□□□□□ -0.023e-6■■■■□ 24.5
SS18-205ENST00000542420 RAD54L2Q9Y4B4 1467 aa14.93□□□□□ -0.02
SS18-205ENST00000542420 TARBP1Q13395 1621 aaKnown RBP14.92□□□□□ -0.02
SS18-205ENST00000542420 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms