RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 PRG4Q92954 1404 aaPredicted RBP17.68■□□□□ 0.42
YBX3-211ENST00000541351 HECW2Q9P2P5 1572 aa17.66■□□□□ 0.42
YBX3-211ENST00000541351 ADGRL1O94910 1474 aa17.66■□□□□ 0.42
YBX3-211ENST00000541351 FHAD1B1AJZ9 1412 aa17.64■□□□□ 0.42
YBX3-211ENST00000541351 ADAMTS12P58397 1594 aa17.64■□□□□ 0.41
YBX3-211ENST00000541351 JPH4Q96JJ6 628 aa17.63■□□□□ 0.41
YBX3-211ENST00000541351 TSPOAP1O95153 1857 aa17.56■□□□□ 0.4
YBX3-211ENST00000541351 WRNQ14191 1432 aaPredicted RBP eCLIP17.55■□□□□ 0.4
YBX3-211ENST00000541351 ERICH3Q5RHP9 1530 aa17.51■□□□□ 0.39
YBX3-211ENST00000541351 ADCY10Q96PN6 1610 aa17.5■□□□□ 0.39
YBX3-211ENST00000541351 LMTK3Q96Q04 1460 aa17.5■□□□□ 0.39
YBX3-211ENST00000541351 TOP2BQ02880 1626 aa17.45■□□□□ 0.38
YBX3-211ENST00000541351 PLB1Q6P1J6 1458 aa17.42■□□□□ 0.38
YBX3-211ENST00000541351 TEX14Q8IWB6 1497 aa17.4■□□□□ 0.38
YBX3-211ENST00000541351 RUSC2Q8N2Y8 1516 aa17.4■□□□□ 0.38
YBX3-211ENST00000541351 GLI2P10070 1586 aa17.4■□□□□ 0.38
YBX3-211ENST00000541351 SOCS7O14512 581 aa17.35■□□□□ 0.37
YBX3-211ENST00000541351 PTPRGP23470 1445 aa17.34■□□□□ 0.37
YBX3-211ENST00000541351 ASXL2Q76L83 1435 aa17.34■□□□□ 0.37
YBX3-211ENST00000541351 ABCC2Q92887 1545 aa17.33■□□□□ 0.37
YBX3-211ENST00000541351 KIAA0586Q9BVV6 1533 aa17.31■□□□□ 0.36
YBX3-211ENST00000541351 PPRC1Q5VV67 1664 aaKnown RBP17.3■□□□□ 0.36
YBX3-211ENST00000541351 COL17A1Q9UMD9 1497 aaPredicted RBP17.28■□□□□ 0.36
YBX3-211ENST00000541351 CARMIL2Q6F5E8 1435 aa17.27■□□□□ 0.35
YBX3-211ENST00000541351 BIVM-ERCC5R4GMW8 1640 aa17.25■□□□□ 0.35
YBX3-211ENST00000541351 TNIKQ9UKE5 1360 aa17.24■□□□□ 0.35
YBX3-211ENST00000541351 DISP3Q9P2K9 1392 aa17.23■□□□□ 0.35
YBX3-211ENST00000541351 UHRF1BP1LA0JNW5 1464 aa17.22■□□□□ 0.35
YBX3-211ENST00000541351 EPRSP07814 1512 aaKnown RBP17.21■□□□□ 0.35
YBX3-211ENST00000541351 MAP3K4Q9Y6R4 1608 aa17.21■□□□□ 0.35
YBX3-211ENST00000541351 TTBK1Q5TCY1 1321 aaPredicted RBP17.21■□□□□ 0.34
YBX3-211ENST00000541351 UACAQ9BZF9 1416 aa17.16■□□□□ 0.34
YBX3-211ENST00000541351 CUL7Q14999 1698 aa17.15■□□□□ 0.34
YBX3-211ENST00000541351 ILDR2Q71H61 639 aa17.12■□□□□ 0.33
YBX3-211ENST00000541351 PTPRMP28827 1452 aa17.12■□□□□ 0.33
YBX3-211ENST00000541351 KDM5BQ9UGL1 1544 aa17.11■□□□□ 0.33
YBX3-211ENST00000541351 PCF11O94913 1555 aaKnown RBP17.1■□□□□ 0.33
YBX3-211ENST00000541351 CERKQ8TCT0 537 aa17.09■□□□□ 0.33
YBX3-211ENST00000541351 MAGI3Q5TCQ9 1506 aa17.07■□□□□ 0.32
YBX3-211ENST00000541351 WDR7Q9Y4E6 1490 aa17.06■□□□□ 0.32
YBX3-211ENST00000541351 CD109Q6YHK3 1445 aa17.06■□□□□ 0.32
YBX3-211ENST00000541351 KIF21BO75037 1637 aa17.05■□□□□ 0.32
YBX3-211ENST00000541351 KIF27Q86VH2 1401 aa17.02■□□□□ 0.31
YBX3-211ENST00000541351 IGF1RP08069 1367 aa17.02■□□□□ 0.31
YBX3-211ENST00000541351 ZCCHC11Q5TAX3 1644 aaKnown RBP17.01■□□□□ 0.31
YBX3-211ENST00000541351 CFAP43Q8NDM7 1665 aa17.01■□□□□ 0.31
YBX3-211ENST00000541351 IQGAP2Q13576 1575 aa17■□□□□ 0.31
YBX3-211ENST00000541351 ADAMTSL3P82987 1691 aa16.99■□□□□ 0.31
YBX3-211ENST00000541351 PHLDB1Q86UU1 1377 aa16.98■□□□□ 0.31
YBX3-211ENST00000541351 SPATA31D1Q6ZQQ2 1576 aa16.97■□□□□ 0.31
YBX3-211ENST00000541351 ARID4BQ4LE39 1312 aaPredicted RBP16.96■□□□□ 0.31
YBX3-211ENST00000541351 ARAP3Q8WWN8 1544 aa16.96■□□□□ 0.31
YBX3-211ENST00000541351 CARMIL1Q5VZK9 1371 aa16.94■□□□□ 0.3
YBX3-211ENST00000541351 KCNH8Q96L42 1107 aa16.94■□□□□ 0.3
YBX3-211ENST00000541351 DISP1Q96F81 1524 aa16.91■□□□□ 0.3
YBX3-211ENST00000541351 DMRT2Q9Y5R5 561 aa16.9■□□□□ 0.3
YBX3-211ENST00000541351 FAM9AQ8IZU1 332 aaPredicted RBP16.89■□□□□ 0.29
YBX3-211ENST00000541351 BCORL1Q5H9F3 1711 aa16.88■□□□□ 0.29
YBX3-211ENST00000541351 HSPA2P54652 639 aa16.88■□□□□ 0.29
YBX3-211ENST00000541351 MADDQ8WXG6 1647 aa16.87■□□□□ 0.29
YBX3-211ENST00000541351 UGGT2Q9NYU1 1516 aa16.86■□□□□ 0.29
YBX3-211ENST00000541351 POGZQ7Z3K3 1410 aa16.84■□□□□ 0.29
YBX3-211ENST00000541351 KIAA0556O60303 1618 aa16.81■□□□□ 0.28
YBX3-211ENST00000541351 NEO1Q92859 1461 aa16.79■□□□□ 0.28
YBX3-211ENST00000541351 RIMS1Q86UR5 1692 aaKnown RBP16.78■□□□□ 0.28
YBX3-211ENST00000541351 RAPGEF3O95398 923 aa16.78■□□□□ 0.28
YBX3-211ENST00000541351 GOLGA3Q08378 1498 aa16.76■□□□□ 0.27
YBX3-211ENST00000541351 PLPPR3Q6T4P5 718 aa16.76■□□□□ 0.27
YBX3-211ENST00000541351 YEATS2Q9ULM3 1422 aa16.76■□□□□ 0.27
YBX3-211ENST00000541351 FANCAO15360 1455 aa16.75■□□□□ 0.27
YBX3-211ENST00000541351 SUPT5HO00267 1087 aaKnown RBP16.75■□□□□ 0.27
YBX3-211ENST00000541351 AKNAQ7Z591 1439 aa16.7■□□□□ 0.26
YBX3-211ENST00000541351 ARHGEF40Q8TER5 1519 aa16.7■□□□□ 0.26
YBX3-211ENST00000541351 ABCA8O94911 1581 aa16.7■□□□□ 0.26
YBX3-211ENST00000541351 IQSEC2Q5JU85 1478 aa16.69■□□□□ 0.26
YBX3-211ENST00000541351 RAPGEF2Q9Y4G8 1499 aa16.69■□□□□ 0.26
YBX3-211ENST00000541351 ABCA9Q8IUA7 1624 aa16.68■□□□□ 0.26
YBX3-211ENST00000541351 DENND4BO75064 1496 aaPredicted RBP16.65■□□□□ 0.26
YBX3-211ENST00000541351 PREX1Q8TCU6 1659 aa16.63■□□□□ 0.25
YBX3-211ENST00000541351 FRMPD1Q5SYB0 1578 aa16.63■□□□□ 0.25
YBX3-211ENST00000541351 PTPRTO14522 1441 aa16.62■□□□□ 0.25
YBX3-211ENST00000541351 TTC37Q6PGP7 1564 aa16.62■□□□□ 0.25
YBX3-211ENST00000541351 UHRF1BP1Q6BDS2 1440 aa16.62■□□□□ 0.25
YBX3-211ENST00000541351 EFCAB5A4FU69 1503 aa16.6■□□□□ 0.25
YBX3-211ENST00000541351 FHOD3Q2V2M9 1422 aa16.6■□□□□ 0.25
YBX3-211ENST00000541351 MAGI2Q86UL8 1455 aa16.6■□□□□ 0.25
YBX3-211ENST00000541351 MLECQ14165 292 aa16.59■□□□□ 0.25
YBX3-211ENST00000541351 FER1L4A9Z1Z3 1794 aa16.59■□□□□ 0.25
YBX3-211ENST00000541351 ATP10BO94823 1461 aa16.57■□□□□ 0.24
YBX3-211ENST00000541351 CFAP74Q9C0B2 1584 aa16.56■□□□□ 0.24
YBX3-211ENST00000541351 ZFYVE16Q7Z3T8 1539 aa16.56■□□□□ 0.24
YBX3-211ENST00000541351 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.56■□□□□ 0.24
YBX3-211ENST00000541351 HNRNPUL2Q1KMD3 747 aaKnown RBP16.56■□□□□ 0.24
YBX3-211ENST00000541351 ZMYM4Q5VZL5 1548 aa16.55■□□□□ 0.24
YBX3-211ENST00000541351 ARID3CA6NKF2 412 aa16.54■□□□□ 0.24
YBX3-211ENST00000541351 STRCQ7RTU9 1775 aa16.53■□□□□ 0.24
YBX3-211ENST00000541351 RICTORQ6R327 1708 aa16.52■□□□□ 0.24
YBX3-211ENST00000541351 CTTNBP2Q8WZ74 1663 aa16.52■□□□□ 0.23
YBX3-211ENST00000541351 SETD1BQ9UPS6 1966 aaKnown RBP16.51■□□□□ 0.23
YBX3-211ENST00000541351 UBAP1LF5GYI3 381 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms