RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 NPM1P06748 294 aaKnown RBP eCLIP20.9■□□□□ 0.94
CLSTN3-209ENST00000539982 FAM69CQ0P6D2 419 aa20.9■□□□□ 0.94
CLSTN3-209ENST00000539982 ABCC10Q5T3U5 1492 aa20.86■□□□□ 0.93
CLSTN3-209ENST00000539982 MAPKBP1O60336 1514 aa20.8■□□□□ 0.92
CLSTN3-209ENST00000539982 RUSC2Q8N2Y8 1516 aa20.78■□□□□ 0.92
CLSTN3-209ENST00000539982 DIP2BQ9P265 1576 aa20.75■□□□□ 0.91
CLSTN3-209ENST00000539982 ADCY10Q96PN6 1610 aa20.75■□□□□ 0.91
CLSTN3-209ENST00000539982 KDM4FA0A1W2PPD8 638 aa20.71■□□□□ 0.91
CLSTN3-209ENST00000539982 KIAA0586Q9BVV6 1533 aa20.71■□□□□ 0.91
CLSTN3-209ENST00000539982 IGF1RP08069 1367 aa20.68■□□□□ 0.9
CLSTN3-209ENST00000539982 KDM6BO15054 1643 aa20.67■□□□□ 0.9
CLSTN3-209ENST00000539982 TSPOAP1O95153 1857 aa20.62■□□□□ 0.89
CLSTN3-209ENST00000539982 PTPRGP23470 1445 aa20.61■□□□□ 0.89
CLSTN3-209ENST00000539982 KIF27Q86VH2 1401 aa20.61■□□□□ 0.89
CLSTN3-209ENST00000539982 CUL7Q14999 1698 aa20.58■□□□□ 0.88
CLSTN3-209ENST00000539982 TTBK1Q5TCY1 1321 aaPredicted RBP20.55■□□□□ 0.88
CLSTN3-209ENST00000539982 TNIKQ9UKE5 1360 aa20.54■□□□□ 0.88
CLSTN3-209ENST00000539982 CARMIL2Q6F5E8 1435 aa20.53■□□□□ 0.88
CLSTN3-209ENST00000539982 CARMIL1Q5VZK9 1371 aa20.52■□□□□ 0.88
CLSTN3-209ENST00000539982 ABCC2Q92887 1545 aa20.52■□□□□ 0.87
CLSTN3-209ENST00000539982 PLB1Q6P1J6 1458 aa20.5■□□□□ 0.87
CLSTN3-209ENST00000539982 ASXL2Q76L83 1435 aa20.5■□□□□ 0.87
CLSTN3-209ENST00000539982 GLI2P10070 1586 aa20.48■□□□□ 0.87
CLSTN3-209ENST00000539982 ILDR1Q86SU0 546 aaPredicted RBP20.47■□□□□ 0.87
CLSTN3-209ENST00000539982 UHRF1BP1LA0JNW5 1464 aa20.45■□□□□ 0.86
CLSTN3-209ENST00000539982 PPRC1Q5VV67 1664 aaKnown RBP20.44■□□□□ 0.86
CLSTN3-209ENST00000539982 UACAQ9BZF9 1416 aa20.44■□□□□ 0.86
CLSTN3-209ENST00000539982 IQGAP2Q13576 1575 aa20.42■□□□□ 0.86
CLSTN3-209ENST00000539982 ADGRL1O94910 1474 aa20.4■□□□□ 0.86
CLSTN3-209ENST00000539982 COL17A1Q9UMD9 1497 aaPredicted RBP20.38■□□□□ 0.85
CLSTN3-209ENST00000539982 DISP1Q96F81 1524 aa20.37■□□□□ 0.85
CLSTN3-209ENST00000539982 EPRSP07814 1512 aaKnown RBP20.37■□□□□ 0.85
CLSTN3-209ENST00000539982 KDM5BQ9UGL1 1544 aa20.36■□□□□ 0.85
CLSTN3-209ENST00000539982 TEX14Q8IWB6 1497 aa20.33■□□□□ 0.85
CLSTN3-209ENST00000539982 MAP3K4Q9Y6R4 1608 aa20.33■□□□□ 0.84
CLSTN3-209ENST00000539982 UGGT2Q9NYU1 1516 aa20.29■□□□□ 0.84
CLSTN3-209ENST00000539982 ZCCHC11Q5TAX3 1644 aaKnown RBP20.27■□□□□ 0.84
CLSTN3-209ENST00000539982 RAPGEF2Q9Y4G8 1499 aa20.27■□□□□ 0.84
CLSTN3-209ENST00000539982 HECW2Q9P2P5 1572 aa20.23■□□□□ 0.83
CLSTN3-209ENST00000539982 KIAA0556O60303 1618 aa20.23■□□□□ 0.83
CLSTN3-209ENST00000539982 WDR7Q9Y4E6 1490 aa20.22■□□□□ 0.83
CLSTN3-209ENST00000539982 CD109Q6YHK3 1445 aa20.18■□□□□ 0.82
CLSTN3-209ENST00000539982 KCNH8Q96L42 1107 aa20.17■□□□□ 0.82
CLSTN3-209ENST00000539982 MAGI3Q5TCQ9 1506 aa20.16■□□□□ 0.82
CLSTN3-209ENST00000539982 GOLGA3Q08378 1498 aa20.11■□□□□ 0.81
CLSTN3-209ENST00000539982 CFAP43Q8NDM7 1665 aa20.11■□□□□ 0.81
CLSTN3-209ENST00000539982 ABCA8O94911 1581 aa20.09■□□□□ 0.81
CLSTN3-209ENST00000539982 CTTNBP2Q8WZ74 1663 aa20.06■□□□□ 0.8
CLSTN3-209ENST00000539982 FAM9AQ8IZU1 332 aaPredicted RBP20.03■□□□□ 0.8
CLSTN3-209ENST00000539982 ARAP3Q8WWN8 1544 aa20.02■□□□□ 0.8
CLSTN3-209ENST00000539982 KIF21BO75037 1637 aa20■□□□□ 0.79
CLSTN3-209ENST00000539982 FBXO41Q8TF61 875 aa19.98■□□□□ 0.79
CLSTN3-209ENST00000539982 PHLDB1Q86UU1 1377 aa19.97■□□□□ 0.79
CLSTN3-209ENST00000539982 ARID3CA6NKF2 412 aa19.96■□□□□ 0.79
CLSTN3-209ENST00000539982 ATP10BO94823 1461 aa19.96■□□□□ 0.79
CLSTN3-209ENST00000539982 PRXQ9BXM0 1461 aa19.96■□□□□ 0.79
CLSTN3-209ENST00000539982 P3H3Q8IVL6 736 aa19.93■□□□□ 0.78
CLSTN3-209ENST00000539982 PTPRMP28827 1452 aa19.92■□□□□ 0.78
CLSTN3-209ENST00000539982 RAPGEF3O95398 923 aa19.91■□□□□ 0.78
CLSTN3-209ENST00000539982 ADAMTSL3P82987 1691 aa19.89■□□□□ 0.77
CLSTN3-209ENST00000539982 ABCA9Q8IUA7 1624 aa19.89■□□□□ 0.77
CLSTN3-209ENST00000539982 NEO1Q92859 1461 aa19.86■□□□□ 0.77
CLSTN3-209ENST00000539982 ARID4BQ4LE39 1312 aaPredicted RBP19.84■□□□□ 0.77
CLSTN3-209ENST00000539982 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.84■□□□□ 0.77
CLSTN3-209ENST00000539982 HNRNPUL2Q1KMD3 747 aaKnown RBP19.84■□□□□ 0.77
CLSTN3-209ENST00000539982 BCORL1Q5H9F3 1711 aa19.8■□□□□ 0.76
CLSTN3-209ENST00000539982 RAPGEF6Q8TEU7 1601 aa19.78■□□□□ 0.76
CLSTN3-209ENST00000539982 SAMD9Q5K651 1589 aa19.78■□□□□ 0.76
CLSTN3-209ENST00000539982 CSRNP3Q8WYN3 585 aa19.77■□□□□ 0.76
CLSTN3-209ENST00000539982 PCF11O94913 1555 aaKnown RBP19.77■□□□□ 0.76
CLSTN3-209ENST00000539982 FRMPD1Q5SYB0 1578 aa19.77■□□□□ 0.76
CLSTN3-209ENST00000539982 MADDQ8WXG6 1647 aa19.76■□□□□ 0.75
CLSTN3-209ENST00000539982 LMTK3Q96Q04 1460 aa19.75■□□□□ 0.75
CLSTN3-209ENST00000539982 PLEKHD1A6NEE1 506 aa19.74■□□□□ 0.75
CLSTN3-209ENST00000539982 DENND4BO75064 1496 aaPredicted RBP19.73■□□□□ 0.75
CLSTN3-209ENST00000539982 NUP153P49790 1475 aaKnown RBP19.73■□□□□ 0.75
CLSTN3-209ENST00000539982 AKNAQ7Z591 1439 aa19.7■□□□□ 0.74
CLSTN3-209ENST00000539982 FHOD3Q2V2M9 1422 aa19.69■□□□□ 0.74
CLSTN3-209ENST00000539982 ARHGEF40Q8TER5 1519 aa19.68■□□□□ 0.74
CLSTN3-209ENST00000539982 RANGAP1P46060 587 aaPredicted RBP19.68■□□□□ 0.74
CLSTN3-209ENST00000539982 RIMS1Q86UR5 1692 aaKnown RBP19.68■□□□□ 0.74
CLSTN3-209ENST00000539982 HSPA2P54652 639 aa19.67■□□□□ 0.74
CLSTN3-209ENST00000539982 RICTORQ6R327 1708 aa19.67■□□□□ 0.74
CLSTN3-209ENST00000539982 POGZQ7Z3K3 1410 aa19.67■□□□□ 0.74
CLSTN3-209ENST00000539982 FANCAO15360 1455 aa19.67■□□□□ 0.74
CLSTN3-209ENST00000539982 PLPPR3Q6T4P5 718 aa19.64■□□□□ 0.73
CLSTN3-209ENST00000539982 CFAP74Q9C0B2 1584 aa19.62■□□□□ 0.73
CLSTN3-209ENST00000539982 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.62■□□□□ 0.73
CLSTN3-209ENST00000539982 ZMYM4Q5VZL5 1548 aa19.61■□□□□ 0.73
CLSTN3-209ENST00000539982 MAGI2Q86UL8 1455 aa19.6■□□□□ 0.73
CLSTN3-209ENST00000539982 CERKQ8TCT0 537 aa19.6■□□□□ 0.73
CLSTN3-209ENST00000539982 ZFYVE16Q7Z3T8 1539 aa19.6■□□□□ 0.73
CLSTN3-209ENST00000539982 YEATS2Q9ULM3 1422 aa19.59■□□□□ 0.73
CLSTN3-209ENST00000539982 MLECQ14165 292 aa19.59■□□□□ 0.73
CLSTN3-209ENST00000539982 EFCAB5A4FU69 1503 aa19.59■□□□□ 0.73
CLSTN3-209ENST00000539982 EEA1Q15075 1411 aa19.56■□□□□ 0.72
CLSTN3-209ENST00000539982 TTC37Q6PGP7 1564 aa19.56■□□□□ 0.72
CLSTN3-209ENST00000539982 SIGLEC1Q9BZZ2 1709 aa19.56■□□□□ 0.72
CLSTN3-209ENST00000539982 PLCH2O75038 1416 aa19.54■□□□□ 0.72
CLSTN3-209ENST00000539982 SCAPERQ9BY12 1400 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms