RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 IGF1RP08069 1367 aa23.97■■□□□ 1.43
SS18-204ENST00000539244 CUL7Q14999 1698 aa23.95■■□□□ 1.43
SS18-204ENST00000539244 KIAA0586Q9BVV6 1533 aa23.95■■□□□ 1.43
SS18-204ENST00000539244 KIF27Q86VH2 1401 aa23.95■■□□□ 1.42
SS18-204ENST00000539244 AEBP2Q6ZN18 517 aaPredicted RBP23.94■■□□□ 1.42
SS18-204ENST00000539244 MAPKBP1O60336 1514 aa23.91■■□□□ 1.42
SS18-204ENST00000539244 ADCY10Q96PN6 1610 aa23.88■■□□□ 1.41
SS18-204ENST00000539244 ABCC10Q5T3U5 1492 aa23.88■■□□□ 1.41
SS18-204ENST00000539244 NPM1P06748 294 aaKnown RBP eCLIP23.84■■□□□ 1.41
SS18-204ENST00000539244 DIP2BQ9P265 1576 aa23.82■■□□□ 1.4
SS18-204ENST00000539244 FAM69CQ0P6D2 419 aa23.81■■□□□ 1.4
SS18-204ENST00000539244 CARMIL1Q5VZK9 1371 aa23.79■■□□□ 1.4
SS18-204ENST00000539244 PTPRGP23470 1445 aa23.72■■□□□ 1.39
SS18-204ENST00000539244 CARMIL2Q6F5E8 1435 aa23.69■■□□□ 1.38
SS18-204ENST00000539244 IQGAP2Q13576 1575 aa23.69■■□□□ 1.38
SS18-204ENST00000539244 TNIKQ9UKE5 1360 aa23.68■■□□□ 1.38
SS18-204ENST00000539244 ABCC2Q92887 1545 aa23.65■■□□□ 1.38
SS18-204ENST00000539244 KDM6BO15054 1643 aa23.62■■□□□ 1.37
SS18-204ENST00000539244 UHRF1BP1LA0JNW5 1464 aa23.62■■□□□ 1.37
SS18-204ENST00000539244 TSPOAP1O95153 1857 aa23.6■■□□□ 1.37
SS18-204ENST00000539244 DISP1Q96F81 1524 aa23.59■■□□□ 1.37
SS18-204ENST00000539244 RAPGEF2Q9Y4G8 1499 aa23.57■■□□□ 1.36
SS18-204ENST00000539244 PLB1Q6P1J6 1458 aa23.56■■□□□ 1.36
SS18-204ENST00000539244 UGGT2Q9NYU1 1516 aa23.56■■□□□ 1.36
SS18-204ENST00000539244 GLI2P10070 1586 aa23.56■■□□□ 1.36
SS18-204ENST00000539244 ASXL2Q76L83 1435 aa23.55■■□□□ 1.36
SS18-204ENST00000539244 UACAQ9BZF9 1416 aa23.55■■□□□ 1.36
SS18-204ENST00000539244 TTBK1Q5TCY1 1321 aaPredicted RBP23.54■■□□□ 1.36
SS18-204ENST00000539244 KDM5BQ9UGL1 1544 aa23.5■■□□□ 1.35
SS18-204ENST00000539244 PPRC1Q5VV67 1664 aaKnown RBP23.49■■□□□ 1.35
SS18-204ENST00000539244 KIAA0556O60303 1618 aa23.48■■□□□ 1.35
SS18-204ENST00000539244 KDM4FA0A1W2PPD8 638 aa23.44■■□□□ 1.34
SS18-204ENST00000539244 EPRSP07814 1512 aaKnown RBP23.43■■□□□ 1.34
SS18-204ENST00000539244 ZCCHC11Q5TAX3 1644 aaKnown RBP23.41■■□□□ 1.34
SS18-204ENST00000539244 MAP3K4Q9Y6R4 1608 aa23.41■■□□□ 1.34
SS18-204ENST00000539244 CTTNBP2Q8WZ74 1663 aa23.39■■□□□ 1.34
SS18-204ENST00000539244 GOLGA3Q08378 1498 aa23.33■■□□□ 1.33
SS18-204ENST00000539244 TEX14Q8IWB6 1497 aa23.33■■□□□ 1.33
SS18-204ENST00000539244 COL17A1Q9UMD9 1497 aaPredicted RBP23.33■■□□□ 1.33
SS18-204ENST00000539244 PRXQ9BXM0 1461 aa23.32■■□□□ 1.32
SS18-204ENST00000539244 WDR7Q9Y4E6 1490 aa23.32■■□□□ 1.32
SS18-204ENST00000539244 ABCA8O94911 1581 aa23.28■■□□□ 1.32
SS18-204ENST00000539244 ADGRL1O94910 1474 aa23.23■■□□□ 1.31
SS18-204ENST00000539244 CFAP43Q8NDM7 1665 aa23.21■■□□□ 1.31
SS18-204ENST00000539244 MAGI3Q5TCQ9 1506 aa23.2■■□□□ 1.3
SS18-204ENST00000539244 CD109Q6YHK3 1445 aa23.17■■□□□ 1.3
SS18-204ENST00000539244 KCNH8Q96L42 1107 aa23.11■■□□□ 1.29
SS18-204ENST00000539244 SAMD9Q5K651 1589 aa23.08■■□□□ 1.29
SS18-204ENST00000539244 ATP10BO94823 1461 aa23.07■■□□□ 1.28
SS18-204ENST00000539244 FAM9AQ8IZU1 332 aaPredicted RBP23.06■■□□□ 1.28
SS18-204ENST00000539244 CSRNP3Q8WYN3 585 aa23.05■■□□□ 1.28
SS18-204ENST00000539244 ARAP3Q8WWN8 1544 aa23.03■■□□□ 1.28
SS18-204ENST00000539244 P3H3Q8IVL6 736 aa23.01■■□□□ 1.27
SS18-204ENST00000539244 ABCA9Q8IUA7 1624 aa23■■□□□ 1.27
SS18-204ENST00000539244 RAPGEF6Q8TEU7 1601 aa22.99■■□□□ 1.27
SS18-204ENST00000539244 EEA1Q15075 1411 aa22.99■■□□□ 1.27
SS18-204ENST00000539244 PHLDB1Q86UU1 1377 aa22.98■■□□□ 1.27
SS18-204ENST00000539244 ARID3CA6NKF2 412 aa22.95■■□□□ 1.26
SS18-204ENST00000539244 HECW2Q9P2P5 1572 aa22.95■■□□□ 1.26
SS18-204ENST00000539244 KIF21BO75037 1637 aa22.93■■□□□ 1.26
SS18-204ENST00000539244 NUP153P49790 1475 aaKnown RBP22.92■■□□□ 1.26
SS18-204ENST00000539244 NEO1Q92859 1461 aa22.91■■□□□ 1.26
SS18-204ENST00000539244 FHOD3Q2V2M9 1422 aa22.85■■□□□ 1.25
SS18-204ENST00000539244 ILDR1Q86SU0 546 aaPredicted RBP22.83■■□□□ 1.25
SS18-204ENST00000539244 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.82■■□□□ 1.24
SS18-204ENST00000539244 HNRNPUL2Q1KMD3 747 aaKnown RBP22.82■■□□□ 1.24
SS18-204ENST00000539244 EFCAB5A4FU69 1503 aa22.82■■□□□ 1.24
SS18-204ENST00000539244 FRMPD1Q5SYB0 1578 aa22.81■■□□□ 1.24
SS18-204ENST00000539244 RAPGEF3O95398 923 aa22.81■■□□□ 1.24
SS18-204ENST00000539244 ADAMTSL3P82987 1691 aa22.81■■□□□ 1.24
SS18-204ENST00000539244 PLEKHD1A6NEE1 506 aa22.76■■□□□ 1.23
SS18-204ENST00000539244 RANGAP1P46060 587 aaPredicted RBP22.76■■□□□ 1.23
SS18-204ENST00000539244 PTPRMP28827 1452 aa22.74■■□□□ 1.23
SS18-204ENST00000539244 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.73■■□□□ 1.23
SS18-204ENST00000539244 BCORL1Q5H9F3 1711 aa22.73■■□□□ 1.23
SS18-204ENST00000539244 RICTORQ6R327 1708 aa22.72■■□□□ 1.23
SS18-204ENST00000539244 CFAP74Q9C0B2 1584 aa22.72■■□□□ 1.23
SS18-204ENST00000539244 DENND4BO75064 1496 aaPredicted RBP22.71■■□□□ 1.23
SS18-204ENST00000539244 ARHGEF40Q8TER5 1519 aa22.71■■□□□ 1.23
SS18-204ENST00000539244 AKNAQ7Z591 1439 aa22.7■■□□□ 1.22
SS18-204ENST00000539244 FANCAO15360 1455 aa22.7■■□□□ 1.22
SS18-204ENST00000539244 TTC37Q6PGP7 1564 aa22.68■■□□□ 1.22
SS18-204ENST00000539244 MADDQ8WXG6 1647 aa22.66■■□□□ 1.22
SS18-204ENST00000539244 ZMYM4Q5VZL5 1548 aa22.66■■□□□ 1.22
SS18-204ENST00000539244 CDK13Q14004 1512 aaKnown RBP22.64■■□□□ 1.21
SS18-204ENST00000539244 ARID4BQ4LE39 1312 aaPredicted RBP22.62■■□□□ 1.21
SS18-204ENST00000539244 FMN1Q68DA7 1419 aa22.6■■□□□ 1.21
SS18-204ENST00000539244 MAGI2Q86UL8 1455 aa22.6■■□□□ 1.21
SS18-204ENST00000539244 PLCH2O75038 1416 aa22.59■■□□□ 1.21
SS18-204ENST00000539244 PCF11O94913 1555 aaKnown RBP22.58■■□□□ 1.2
SS18-204ENST00000539244 ZFYVE16Q7Z3T8 1539 aa22.57■■□□□ 1.2
SS18-204ENST00000539244 HECW1Q76N89 1606 aa22.57■■□□□ 1.2
SS18-204ENST00000539244 ARHGAP35Q9NRY4 1499 aa22.57■■□□□ 1.2
SS18-204ENST00000539244 YEATS2Q9ULM3 1422 aa22.56■■□□□ 1.2
SS18-204ENST00000539244 RIMS1Q86UR5 1692 aaKnown RBP22.55■■□□□ 1.2
SS18-204ENST00000539244 LMTK3Q96Q04 1460 aa22.55■■□□□ 1.2
SS18-204ENST00000539244 POGZQ7Z3K3 1410 aa22.55■■□□□ 1.2
SS18-204ENST00000539244 UBTFP17480 764 aaKnown RBP22.54■■□□□ 1.2
SS18-204ENST00000539244 SIGLEC1Q9BZZ2 1709 aa22.54■■□□□ 1.2
SS18-204ENST00000539244 SCAPERQ9BY12 1400 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms