RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 CUL7Q14999 1698 aa19.94■□□□□ 0.78
VPS28-214ENST00000531032 IGF1RP08069 1367 aa19.93■□□□□ 0.78
VPS28-214ENST00000531032 KIAA0586Q9BVV6 1533 aa19.88■□□□□ 0.77
VPS28-214ENST00000531032 KIF13AQ9H1H9 1805 aa19.84■□□□□ 0.77
VPS28-214ENST00000531032 CARMIL1Q5VZK9 1371 aa19.8■□□□□ 0.76
VPS28-214ENST00000531032 ADCY10Q96PN6 1610 aa19.8■□□□□ 0.76
VPS28-214ENST00000531032 MAPKBP1O60336 1514 aa19.78■□□□□ 0.76
VPS28-214ENST00000531032 ABCC10Q5T3U5 1492 aa19.75■□□□□ 0.75
VPS28-214ENST00000531032 NPM1P06748 294 aaKnown RBP eCLIP19.72■□□□□ 0.75
VPS28-214ENST00000531032 DIP2BQ9P265 1576 aa19.71■□□□□ 0.75
VPS28-214ENST00000531032 IQGAP2Q13576 1575 aa19.7■□□□□ 0.74
VPS28-214ENST00000531032 FAM69CQ0P6D2 419 aa19.68■□□□□ 0.74
VPS28-214ENST00000531032 PTPRGP23470 1445 aa19.68■□□□□ 0.74
VPS28-214ENST00000531032 CARMIL2Q6F5E8 1435 aa19.67■□□□□ 0.74
VPS28-214ENST00000531032 TNIKQ9UKE5 1360 aa19.65■□□□□ 0.74
VPS28-214ENST00000531032 RAPGEF2Q9Y4G8 1499 aa19.63■□□□□ 0.73
VPS28-214ENST00000531032 AEBP2Q6ZN18 517 aaPredicted RBP19.63■□□□□ 0.73
VPS28-214ENST00000531032 ABCC2Q92887 1545 aa19.61■□□□□ 0.73
VPS28-214ENST00000531032 DISP1Q96F81 1524 aa19.61■□□□□ 0.73
VPS28-214ENST00000531032 UGGT2Q9NYU1 1516 aa19.58■□□□□ 0.73
VPS28-214ENST00000531032 UHRF1BP1LA0JNW5 1464 aa19.58■□□□□ 0.72
VPS28-214ENST00000531032 TTBK1Q5TCY1 1321 aaPredicted RBP19.55■□□□□ 0.72
VPS28-214ENST00000531032 UACAQ9BZF9 1416 aa19.54■□□□□ 0.72
VPS28-214ENST00000531032 TSPOAP1O95153 1857 aa19.53■□□□□ 0.72
VPS28-214ENST00000531032 KIAA0556O60303 1618 aa19.53■□□□□ 0.72
VPS28-214ENST00000531032 ASXL2Q76L83 1435 aa19.52■□□□□ 0.72
VPS28-214ENST00000531032 KDM6BO15054 1643 aa19.52■□□□□ 0.72
VPS28-214ENST00000531032 PLB1Q6P1J6 1458 aa19.51■□□□□ 0.71
VPS28-214ENST00000531032 CTTNBP2Q8WZ74 1663 aa19.49■□□□□ 0.71
VPS28-214ENST00000531032 GLI2P10070 1586 aa19.49■□□□□ 0.71
VPS28-214ENST00000531032 KDM5BQ9UGL1 1544 aa19.49■□□□□ 0.71
VPS28-214ENST00000531032 PRXQ9BXM0 1461 aa19.45■□□□□ 0.7
VPS28-214ENST00000531032 PPRC1Q5VV67 1664 aaKnown RBP19.45■□□□□ 0.7
VPS28-214ENST00000531032 ZCCHC11Q5TAX3 1644 aaKnown RBP19.44■□□□□ 0.7
VPS28-214ENST00000531032 EPRSP07814 1512 aaKnown RBP19.41■□□□□ 0.7
VPS28-214ENST00000531032 GOLGA3Q08378 1498 aa19.41■□□□□ 0.7
VPS28-214ENST00000531032 MAP3K4Q9Y6R4 1608 aa19.4■□□□□ 0.7
VPS28-214ENST00000531032 ABCA8O94911 1581 aa19.36■□□□□ 0.69
VPS28-214ENST00000531032 WDR7Q9Y4E6 1490 aa19.35■□□□□ 0.69
VPS28-214ENST00000531032 TEX14Q8IWB6 1497 aa19.32■□□□□ 0.68
VPS28-214ENST00000531032 KDM4FA0A1W2PPD8 638 aa19.3■□□□□ 0.68
VPS28-214ENST00000531032 COL17A1Q9UMD9 1497 aaPredicted RBP19.29■□□□□ 0.68
VPS28-214ENST00000531032 CSRNP3Q8WYN3 585 aa19.24■□□□□ 0.67
VPS28-214ENST00000531032 CFAP43Q8NDM7 1665 aa19.24■□□□□ 0.67
VPS28-214ENST00000531032 SAMD9Q5K651 1589 aa19.23■□□□□ 0.67
VPS28-214ENST00000531032 MAGI3Q5TCQ9 1506 aa19.22■□□□□ 0.67
VPS28-214ENST00000531032 EEA1Q15075 1411 aa19.2■□□□□ 0.66
VPS28-214ENST00000531032 CD109Q6YHK3 1445 aa19.2■□□□□ 0.66
VPS28-214ENST00000531032 ADGRL1O94910 1474 aa19.17■□□□□ 0.66
VPS28-214ENST00000531032 KCNH8Q96L42 1107 aa19.17■□□□□ 0.66
VPS28-214ENST00000531032 ATP10BO94823 1461 aa19.16■□□□□ 0.66
VPS28-214ENST00000531032 P3H3Q8IVL6 736 aa19.16■□□□□ 0.66
VPS28-214ENST00000531032 FAM9AQ8IZU1 332 aaPredicted RBP19.15■□□□□ 0.66
VPS28-214ENST00000531032 RAPGEF6Q8TEU7 1601 aa19.13■□□□□ 0.65
VPS28-214ENST00000531032 ARID3CA6NKF2 412 aa19.1■□□□□ 0.65
VPS28-214ENST00000531032 ABCA9Q8IUA7 1624 aa19.1■□□□□ 0.65
VPS28-214ENST00000531032 ARAP3Q8WWN8 1544 aa19.07■□□□□ 0.64
VPS28-214ENST00000531032 KIF21BO75037 1637 aa19.07■□□□□ 0.64
VPS28-214ENST00000531032 NUP153P49790 1475 aaKnown RBP19.06■□□□□ 0.64
VPS28-214ENST00000531032 FHOD3Q2V2M9 1422 aa19.05■□□□□ 0.64
VPS28-214ENST00000531032 EFCAB5A4FU69 1503 aa19.02■□□□□ 0.64
VPS28-214ENST00000531032 PHLDB1Q86UU1 1377 aa19.02■□□□□ 0.64
VPS28-214ENST00000531032 RANGAP1P46060 587 aaPredicted RBP19■□□□□ 0.63
VPS28-214ENST00000531032 NEO1Q92859 1461 aa18.99■□□□□ 0.63
VPS28-214ENST00000531032 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.97■□□□□ 0.63
VPS28-214ENST00000531032 HNRNPUL2Q1KMD3 747 aaKnown RBP18.97■□□□□ 0.63
VPS28-214ENST00000531032 FRMPD1Q5SYB0 1578 aa18.93■□□□□ 0.62
VPS28-214ENST00000531032 HECW2Q9P2P5 1572 aa18.91■□□□□ 0.62
VPS28-214ENST00000531032 PLEKHD1A6NEE1 506 aa18.91■□□□□ 0.62
VPS28-214ENST00000531032 RAPGEF3O95398 923 aa18.9■□□□□ 0.62
VPS28-214ENST00000531032 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.89■□□□□ 0.617e-7■■□□□ 14.3
VPS28-214ENST00000531032 CHIC1Q5VXU3 224 aa18.87■□□□□ 0.61
VPS28-214ENST00000531032 TTC37Q6PGP7 1564 aa18.86■□□□□ 0.61
VPS28-214ENST00000531032 CFAP74Q9C0B2 1584 aa18.86■□□□□ 0.61
VPS28-214ENST00000531032 CDK13Q14004 1512 aaKnown RBP18.86■□□□□ 0.61
VPS28-214ENST00000531032 RICTORQ6R327 1708 aa18.85■□□□□ 0.61
VPS28-214ENST00000531032 ADAMTSL3P82987 1691 aa18.85■□□□□ 0.61
VPS28-214ENST00000531032 FANCAO15360 1455 aa18.84■□□□□ 0.61
VPS28-214ENST00000531032 DENND4BO75064 1496 aaPredicted RBP18.84■□□□□ 0.61
VPS28-214ENST00000531032 ARHGAP35Q9NRY4 1499 aa18.84■□□□□ 0.61
VPS28-214ENST00000531032 FMN1Q68DA7 1419 aa18.83■□□□□ 0.61
VPS28-214ENST00000531032 AKNAQ7Z591 1439 aa18.83■□□□□ 0.61
VPS28-214ENST00000531032 UBTFP17480 764 aaKnown RBP18.83■□□□□ 0.6
VPS28-214ENST00000531032 ARHGEF40Q8TER5 1519 aa18.83■□□□□ 0.6
VPS28-214ENST00000531032 HECW1Q76N89 1606 aa18.82■□□□□ 0.6
VPS28-214ENST00000531032 BCORL1Q5H9F3 1711 aa18.8■□□□□ 0.6
VPS28-214ENST00000531032 PTPRMP28827 1452 aa18.79■□□□□ 0.6
VPS28-214ENST00000531032 EHMT2Q96KQ7 1210 aa18.79■□□□□ 0.6
VPS28-214ENST00000531032 ZMYM4Q5VZL5 1548 aa18.79■□□□□ 0.6
VPS28-214ENST00000531032 PLCH2O75038 1416 aa18.75■□□□□ 0.59
VPS28-214ENST00000531032 MADDQ8WXG6 1647 aa18.75■□□□□ 0.59
VPS28-214ENST00000531032 ZFYVE16Q7Z3T8 1539 aa18.73■□□□□ 0.59
VPS28-214ENST00000531032 ARID4BQ4LE39 1312 aaPredicted RBP18.73■□□□□ 0.59
VPS28-214ENST00000531032 MAGI2Q86UL8 1455 aa18.72■□□□□ 0.59
VPS28-214ENST00000531032 MYO5CQ9NQX4 1742 aa18.72■□□□□ 0.59
VPS28-214ENST00000531032 POGZQ7Z3K3 1410 aa18.72■□□□□ 0.59
VPS28-214ENST00000531032 ATP1B4Q9UN42 357 aaPredicted RBP18.71■□□□□ 0.59
VPS28-214ENST00000531032 LRRIQ1Q96JM4 1722 aa18.71■□□□□ 0.59
VPS28-214ENST00000531032 KIF14Q15058 1648 aa18.71■□□□□ 0.58
VPS28-214ENST00000531032 TROQ12816 1431 aaPredicted RBP18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms