RNA–Protein interactions for RNA: ENST00000530546.5

USP35-207, Transcript of ubiquitin specific peptidase 35, humanhuman

TSL 1 (best)

Gene USP35, Length 2,986 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-207ENST00000530546 KIF21AQ7Z4S6 1674 aa17.21■□□□□ 0.35
USP35-207ENST00000530546 ITGAEP38570 1179 aa17.16■□□□□ 0.34
USP35-207ENST00000530546 GAPVD1Q14C86 1478 aa17.16■□□□□ 0.34
USP35-207ENST00000530546 FHOD3Q2V2M9 1422 aa17.16■□□□□ 0.34
USP35-207ENST00000530546 CUL7Q14999 1698 aa17.13■□□□□ 0.33
USP35-207ENST00000530546 WDR97A6NE52 1622 aa17.12■□□□□ 0.33
USP35-207ENST00000530546 FHAD1B1AJZ9 1412 aa17.1■□□□□ 0.33
USP35-207ENST00000530546 ABCA5Q8WWZ7 1642 aa17.1■□□□□ 0.33
USP35-207ENST00000530546 CCNB3Q8WWL7 1395 aa17.08■□□□□ 0.33
USP35-207ENST00000530546 TIAM1Q13009 1591 aa17.08■□□□□ 0.32
USP35-207ENST00000530546 RRBP1Q9P2E9 1410 aaKnown RBP17.07■□□□□ 0.32
USP35-207ENST00000530546 AQRO60306 1485 aaKnown RBP eCLIP17.06■□□□□ 0.326e-7■■■■■ 32.3
USP35-207ENST00000530546 MRC2Q9UBG0 1479 aa17.06■□□□□ 0.32
USP35-207ENST00000530546 PCF11O94913 1555 aaKnown RBP17.06■□□□□ 0.32
USP35-207ENST00000530546 DIEXFQ68CQ4 756 aaKnown RBP17.05■□□□□ 0.32
USP35-207ENST00000530546 TARBP1Q13395 1621 aaKnown RBP17.04■□□□□ 0.32
USP35-207ENST00000530546 LRRC9Q6ZRR7 1453 aa17.04■□□□□ 0.32
USP35-207ENST00000530546 CTTNBP2Q8WZ74 1663 aa17.03■□□□□ 0.32
USP35-207ENST00000530546 FAM50AQ14320 339 aaKnown RBP17.02■□□□□ 0.31
USP35-207ENST00000530546 EFCAB5A4FU69 1503 aa17.02■□□□□ 0.31
USP35-207ENST00000530546 MAP3K1Q13233 1512 aa17■□□□□ 0.31
USP35-207ENST00000530546 PHLDB1Q86UU1 1377 aa17■□□□□ 0.31
USP35-207ENST00000530546 CASKIN1Q8WXD9 1431 aa16.98■□□□□ 0.31
USP35-207ENST00000530546 DHX57Q6P158 1386 aaKnown RBP16.97■□□□□ 0.31
USP35-207ENST00000530546 FYCO1Q9BQS8 1478 aa16.96■□□□□ 0.31
USP35-207ENST00000530546 FMN1Q68DA7 1419 aa16.96■□□□□ 0.31
USP35-207ENST00000530546 ZNF608Q9ULD9 1512 aaPredicted RBP16.96■□□□□ 0.3
USP35-207ENST00000530546 ERCC6Q03468 1493 aa16.95■□□□□ 0.3
USP35-207ENST00000530546 ZNF316A6NFI3 1004 aaPredicted RBP16.95■□□□□ 0.3
USP35-207ENST00000530546 CFAP43Q8NDM7 1665 aa16.92■□□□□ 0.3
USP35-207ENST00000530546 PBRM1Q86U86 1689 aa16.92■□□□□ 0.3
USP35-207ENST00000530546 GRIN2BQ13224 1484 aa16.92■□□□□ 0.3
USP35-207ENST00000530546 IFT140Q96RY7 1462 aa16.9■□□□□ 0.3
USP35-207ENST00000530546 MTUS2Q5JR59 1369 aa16.9■□□□□ 0.3
USP35-207ENST00000530546 SNAPC4Q5SXM2 1469 aa16.89■□□□□ 0.29
USP35-207ENST00000530546 SAMD9Q5K651 1589 aa16.89■□□□□ 0.29
USP35-207ENST00000530546 ARID3CA6NKF2 412 aa16.89■□□□□ 0.29
USP35-207ENST00000530546 WDR62O43379 1518 aa16.88■□□□□ 0.29
USP35-207ENST00000530546 RAB3GAP2Q9H2M9 1393 aa16.88■□□□□ 0.29
USP35-207ENST00000530546 ADAMTS12P58397 1594 aa16.87■□□□□ 0.29
USP35-207ENST00000530546 CLSPNQ9HAW4 1339 aa16.84■□□□□ 0.29
USP35-207ENST00000530546 FBLN2P98095 1184 aa16.83■□□□□ 0.28
USP35-207ENST00000530546 IQGAP2Q13576 1575 aa16.82■□□□□ 0.28
USP35-207ENST00000530546 SETD5Q9C0A6 1442 aa16.82■□□□□ 0.28
USP35-207ENST00000530546 CHMP7Q8WUX9 453 aaPredicted RBP16.78■□□□□ 0.28
USP35-207ENST00000530546 FGD6Q6ZV73 1430 aa16.78■□□□□ 0.28
USP35-207ENST00000530546 EIF4G3O43432 1585 aaKnown RBP16.77■□□□□ 0.28
USP35-207ENST00000530546 LRRIQ1Q96JM4 1722 aa16.77■□□□□ 0.28
USP35-207ENST00000530546 NCOA2Q15596 1464 aa16.76■□□□□ 0.27
USP35-207ENST00000530546 THOC2Q8NI27 1593 aaKnown RBP16.74■□□□□ 0.27
USP35-207ENST00000530546 GRIN2AQ12879 1464 aa16.73■□□□□ 0.27
USP35-207ENST00000530546 KIAA0586Q9BVV6 1533 aa16.72■□□□□ 0.27
USP35-207ENST00000530546 CDK13Q14004 1512 aaKnown RBP16.71■□□□□ 0.27
USP35-207ENST00000530546 MAGI3Q5TCQ9 1506 aa16.71■□□□□ 0.27
USP35-207ENST00000530546 MYOM3Q5VTT5 1437 aa16.7■□□□□ 0.26
USP35-207ENST00000530546 SIN3AQ96ST3 1273 aa16.7■□□□□ 0.26
USP35-207ENST00000530546 EHBP1L1Q8N3D4 1523 aa16.7■□□□□ 0.26
USP35-207ENST00000530546 UGGT2Q9NYU1 1516 aa16.7■□□□□ 0.26
USP35-207ENST00000530546 EPRSP07814 1512 aaKnown RBP16.69■□□□□ 0.26
USP35-207ENST00000530546 CCDC18Q5T9S5 1454 aa16.69■□□□□ 0.26
USP35-207ENST00000530546 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.69■□□□□ 0.26
USP35-207ENST00000530546 HECW1Q76N89 1606 aa16.69■□□□□ 0.26
USP35-207ENST00000530546 MAPKBP1O60336 1514 aa16.69■□□□□ 0.26
USP35-207ENST00000530546 PTPRKQ15262 1439 aa16.68■□□□□ 0.26
USP35-207ENST00000530546 SUPT6HQ7KZ85 1726 aaKnown RBP16.67■□□□□ 0.26
USP35-207ENST00000530546 MIER1Q8N108 512 aa16.67■□□□□ 0.26
USP35-207ENST00000530546 CHIC2Q9UKJ5 165 aa16.67■□□□□ 0.26
USP35-207ENST00000530546 DISP1Q96F81 1524 aa16.67■□□□□ 0.26
USP35-207ENST00000530546 MAGI1Q96QZ7 1491 aaPredicted RBP16.66■□□□□ 0.26
USP35-207ENST00000530546 SYNJ2O15056 1496 aa16.64■□□□□ 0.25
USP35-207ENST00000530546 KIAA0556O60303 1618 aa16.64■□□□□ 0.25
USP35-207ENST00000530546 BCL11AQ9H165 835 aa16.63■□□□□ 0.25
USP35-207ENST00000530546 RRP7BPQ9NSQ0 103 aa16.63■□□□□ 0.25
USP35-207ENST00000530546 YTHDC1Q96MU7 727 aaKnown RBP16.62■□□□□ 0.25
USP35-207ENST00000530546 JPH4Q96JJ6 628 aa16.61■□□□□ 0.25
USP35-207ENST00000530546 CEP170Q5SW79 1584 aa16.61■□□□□ 0.25
USP35-207ENST00000530546 ANP32EQ9BTT0 268 aa16.61■□□□□ 0.25
USP35-207ENST00000530546 PTPN23Q9H3S7 1636 aa16.6■□□□□ 0.25
USP35-207ENST00000530546 ARHGEF11O15085 1522 aa16.58■□□□□ 0.25
USP35-207ENST00000530546 NUP153P49790 1475 aaKnown RBP16.57■□□□□ 0.24
USP35-207ENST00000530546 HFM1A2PYH4 1435 aa16.57■□□□□ 0.24
USP35-207ENST00000530546 NAIPQ13075 1403 aa16.56■□□□□ 0.24
USP35-207ENST00000530546 CDK11AQ9UQ88 783 aaPredicted RBP16.56■□□□□ 0.24
USP35-207ENST00000530546 PLB1Q6P1J6 1458 aa16.55■□□□□ 0.24
USP35-207ENST00000530546 RAPGEF6Q8TEU7 1601 aa16.54■□□□□ 0.24
USP35-207ENST00000530546 CARMIL2Q6F5E8 1435 aa16.53■□□□□ 0.24
USP35-207ENST00000530546 TRIM52Q96A61 297 aa16.53■□□□□ 0.24
USP35-207ENST00000530546 ZNF644Q9H582 1327 aaPredicted RBP16.53■□□□□ 0.24
USP35-207ENST00000530546 NUP160Q12769 1436 aa16.53■□□□□ 0.24
USP35-207ENST00000530546 PRKCSHP14314 528 aaPredicted RBP16.52■□□□□ 0.23
USP35-207ENST00000530546 PRG4Q92954 1404 aaPredicted RBP16.51■□□□□ 0.23
USP35-207ENST00000530546 TCOF1Q13428 1488 aaKnown RBP16.51■□□□□ 0.23
USP35-207ENST00000530546 UACAQ9BZF9 1416 aa16.5■□□□□ 0.23
USP35-207ENST00000530546 MIA2Q96PC5 1412 aa16.5■□□□□ 0.23
USP35-207ENST00000530546 ZNF777Q9ULD5 760 aaPredicted RBP16.49■□□□□ 0.23
USP35-207ENST00000530546 HIRIP3Q9BW71 556 aaPredicted RBP16.47■□□□□ 0.23
USP35-207ENST00000530546 TONSLQ96HA7 1378 aa16.46■□□□□ 0.23
USP35-207ENST00000530546 PPP1R15AO75807 674 aaPredicted RBP16.45■□□□□ 0.22
USP35-207ENST00000530546 CFDP1Q9UEE9 299 aaPredicted RBP16.45■□□□□ 0.22
USP35-207ENST00000530546 TROQ12816 1431 aaPredicted RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms