RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 OSCARQ8IYS5 282 aa22.5■■□□□ 1.19
CD44-224ENST00000526669 IQGAP2Q13576 1575 aa22.45■■□□□ 1.18
CD44-224ENST00000526669 KIAA0586Q9BVV6 1533 aa22.41■■□□□ 1.18
CD44-224ENST00000526669 UBTFP17480 764 aaKnown RBP22.41■■□□□ 1.18
CD44-224ENST00000526669 SHROOM2Q13796 1616 aa22.39■■□□□ 1.18
CD44-224ENST00000526669 LOC105371045A0A1W2PR82 267 aa22.39■■□□□ 1.17
CD44-224ENST00000526669 ERCC6L2Q5T890 1561 aa22.31■■□□□ 1.16
CD44-224ENST00000526669 RANGAP1P46060 587 aaPredicted RBP22.31■■□□□ 1.16
CD44-224ENST00000526669 UGGT2Q9NYU1 1516 aa22.28■■□□□ 1.16
CD44-224ENST00000526669 JPH4Q96JJ6 628 aa22.28■■□□□ 1.16
CD44-224ENST00000526669 RIMBP3CA6NJZ7 1639 aa22.28■■□□□ 1.16
CD44-224ENST00000526669 RIMBP3BA6NNM3 1639 aa22.28■■□□□ 1.16
CD44-224ENST00000526669 RIMBP3Q9UFD9 1639 aa22.28■■□□□ 1.16
CD44-224ENST00000526669 TNIKQ9UKE5 1360 aa22.26■■□□□ 1.15
CD44-224ENST00000526669 PRG4Q92954 1404 aaPredicted RBP22.25■■□□□ 1.15
CD44-224ENST00000526669 KIAA0556O60303 1618 aa22.24■■□□□ 1.15
CD44-224ENST00000526669 ARHGEF11O15085 1522 aa22.24■■□□□ 1.15
CD44-224ENST00000526669 SAMD9Q5K651 1589 aa22.23■■□□□ 1.15
CD44-224ENST00000526669 DISP1Q96F81 1524 aa22.21■■□□□ 1.15
CD44-224ENST00000526669 P3H3Q8IVL6 736 aa22.16■■□□□ 1.14
CD44-224ENST00000526669 EFCAB5A4FU69 1503 aa22.16■■□□□ 1.14
CD44-224ENST00000526669 CARMIL2Q6F5E8 1435 aa22.15■■□□□ 1.14
CD44-224ENST00000526669 DNAJC5Q9H3Z4 198 aa22.15■■□□□ 1.14
CD44-224ENST00000526669 CEP162Q5TB80 1403 aa22.14■■□□□ 1.14
CD44-224ENST00000526669 TTBK1Q5TCY1 1321 aaPredicted RBP22.13■■□□□ 1.13
CD44-224ENST00000526669 ARHGAP35Q9NRY4 1499 aa22.13■■□□□ 1.13
CD44-224ENST00000526669 CLIP1P30622 1438 aa22.12■■□□□ 1.13
CD44-224ENST00000526669 FHOD3Q2V2M9 1422 aa22.11■■□□□ 1.13
CD44-224ENST00000526669 ARAP1Q96P48 1450 aa22.1■■□□□ 1.13
CD44-224ENST00000526669 PTPRGP23470 1445 aa22.01■■□□□ 1.11
CD44-224ENST00000526669 CYB5RLQ6IPT4 315 aa21.97■■□□□ 1.11
CD44-224ENST00000526669 RAPGEF6Q8TEU7 1601 aa21.96■■□□□ 1.11
CD44-224ENST00000526669 ADCY10Q96PN6 1610 aa21.95■■□□□ 1.1
CD44-224ENST00000526669 PLB1Q6P1J6 1458 aa21.94■■□□□ 1.1
CD44-224ENST00000526669 ABCA8O94911 1581 aa21.94■■□□□ 1.1
CD44-224ENST00000526669 PCF11O94913 1555 aaKnown RBP21.93■■□□□ 1.1
CD44-224ENST00000526669 LRRIQ1Q96JM4 1722 aa21.92■■□□□ 1.1
CD44-224ENST00000526669 FMN1Q68DA7 1419 aa21.89■■□□□ 1.1
CD44-224ENST00000526669 ABCC2Q92887 1545 aa21.89■■□□□ 1.09
CD44-224ENST00000526669 UACAQ9BZF9 1416 aa21.89■■□□□ 1.09
CD44-224ENST00000526669 HECW1Q76N89 1606 aa21.86■■□□□ 1.09
CD44-224ENST00000526669 ZCCHC11Q5TAX3 1644 aaKnown RBP21.84■■□□□ 1.09
CD44-224ENST00000526669 ATP1B4Q9UN42 357 aaPredicted RBP21.83■■□□□ 1.09
CD44-224ENST00000526669 UHRF1BP1LA0JNW5 1464 aa21.83■■□□□ 1.08
CD44-224ENST00000526669 VPS8Q8N3P4 1428 aa21.82■■□□□ 1.08
CD44-224ENST00000526669 ARID3CA6NKF2 412 aa21.82■■□□□ 1.08
CD44-224ENST00000526669 NUP153P49790 1475 aaKnown RBP21.8■■□□□ 1.08
CD44-224ENST00000526669 CASKIN1Q8WXD9 1431 aa21.8■■□□□ 1.08
CD44-224ENST00000526669 FYCO1Q9BQS8 1478 aa21.79■■□□□ 1.08
CD44-224ENST00000526669 CDK13Q14004 1512 aaKnown RBP21.77■■□□□ 1.08
CD44-224ENST00000526669 KDM5BQ9UGL1 1544 aa21.74■■□□□ 1.07
CD44-224ENST00000526669 CFAP43Q8NDM7 1665 aa21.73■■□□□ 1.07
CD44-224ENST00000526669 EPRSP07814 1512 aaKnown RBP21.72■■□□□ 1.07
CD44-224ENST00000526669 ATP10BO94823 1461 aa21.71■■□□□ 1.07
CD44-224ENST00000526669 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.69■■□□□ 1.06
CD44-224ENST00000526669 HNRNPUL2Q1KMD3 747 aaKnown RBP21.69■■□□□ 1.06
CD44-224ENST00000526669 NPM1P06748 294 aaKnown RBP eCLIP21.68■■□□□ 1.06
CD44-224ENST00000526669 CCDC18Q5T9S5 1454 aa21.67■■□□□ 1.06
CD44-224ENST00000526669 TIAM1Q13009 1591 aa21.65■■□□□ 1.06
CD44-224ENST00000526669 MAPKBP1O60336 1514 aa21.63■■□□□ 1.05
CD44-224ENST00000526669 ASXL2Q76L83 1435 aa21.62■■□□□ 1.05
CD44-224ENST00000526669 KIF13AQ9H1H9 1805 aa21.61■■□□□ 1.05
CD44-224ENST00000526669 MAGI3Q5TCQ9 1506 aa21.6■■□□□ 1.05
CD44-224ENST00000526669 WDR7Q9Y4E6 1490 aa21.58■■□□□ 1.04
CD44-224ENST00000526669 KIF14Q15058 1648 aa21.55■■□□□ 1.04
CD44-224ENST00000526669 TSPOAP1O95153 1857 aa21.54■■□□□ 1.04
CD44-224ENST00000526669 DIP2BQ9P265 1576 aa21.54■■□□□ 1.04
CD44-224ENST00000526669 APLP2Q06481 763 aa21.54■■□□□ 1.04
CD44-224ENST00000526669 MAP3K1Q13233 1512 aa21.53■■□□□ 1.04
CD44-224ENST00000526669 EHBP1L1Q8N3D4 1523 aa21.52■■□□□ 1.04
CD44-224ENST00000526669 PLEKHD1A6NEE1 506 aa21.52■■□□□ 1.04
CD44-224ENST00000526669 KCNH8Q96L42 1107 aa21.51■■□□□ 1.03
CD44-224ENST00000526669 TROQ12816 1431 aaPredicted RBP21.5■■□□□ 1.03
CD44-224ENST00000526669 CDK11AQ9UQ88 783 aaPredicted RBP21.5■■□□□ 1.03
CD44-224ENST00000526669 MTUS2Q5JR59 1369 aa21.49■■□□□ 1.03
CD44-224ENST00000526669 SUPT6HQ7KZ85 1726 aaKnown RBP21.49■■□□□ 1.03
CD44-224ENST00000526669 LRRC9Q6ZRR7 1453 aa21.49■■□□□ 1.03
CD44-224ENST00000526669 TTC37Q6PGP7 1564 aa21.48■■□□□ 1.03
CD44-224ENST00000526669 KANK4Q5T7N3 995 aaPredicted RBP21.47■■□□□ 1.03
CD44-224ENST00000526669 ABCC10Q5T3U5 1492 aa21.46■■□□□ 1.03
CD44-224ENST00000526669 PPARGC1BQ86YN6 1023 aaKnown RBP21.46■■□□□ 1.03
CD44-224ENST00000526669 MYO5CQ9NQX4 1742 aa21.45■■□□□ 1.02
CD44-224ENST00000526669 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.45■■□□□ 1.02
CD44-224ENST00000526669 ABCA9Q8IUA7 1624 aa21.44■■□□□ 1.02
CD44-224ENST00000526669 CDC42BPAQ5VT25 1732 aa21.44■■□□□ 1.02
CD44-224ENST00000526669 GLI2P10070 1586 aa21.43■■□□□ 1.02
CD44-224ENST00000526669 MAP3K4Q9Y6R4 1608 aa21.42■■□□□ 1.02
CD44-224ENST00000526669 TRHP20396 242 aaPredicted RBP21.41■■□□□ 1.02
CD44-224ENST00000526669 FAM69CQ0P6D2 419 aa21.4■■□□□ 1.02
CD44-224ENST00000526669 CDC42BPBQ9Y5S2 1711 aa21.39■■□□□ 1.01
CD44-224ENST00000526669 PPRC1Q5VV67 1664 aaKnown RBP21.39■■□□□ 1.01
CD44-224ENST00000526669 NCOA2Q15596 1464 aa21.38■■□□□ 1.01
CD44-224ENST00000526669 ITSN2Q9NZM3 1697 aa21.37■■□□□ 1.01
CD44-224ENST00000526669 PREX2Q70Z35 1606 aa21.36■■□□□ 1.01
CD44-224ENST00000526669 CD109Q6YHK3 1445 aa21.31■■□□□ 1
CD44-224ENST00000526669 CCNB3Q8WWL7 1395 aa21.29■■□□□ 1
CD44-224ENST00000526669 ARHGAP5Q13017 1502 aa21.27■■□□□ 1
CD44-224ENST00000526669 GPATCH8Q9UKJ3 1502 aaKnown RBP21.26■□□□□ 0.99
CD44-224ENST00000526669 PHLDB1Q86UU1 1377 aa21.25■□□□□ 0.99
CD44-224ENST00000526669 CFAP74Q9C0B2 1584 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms