RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 NISCHQ9Y2I1 1504 aa32.58■■■□□ 2.81
CD44-224ENST00000526669 CCDC180Q9P1Z9 1646 aa28.86■■■□□ 2.21
CD44-224ENST00000526669 ABCC9O60706 1549 aa27.82■■■□□ 2.04
CD44-224ENST00000526669 ZCCHC6Q5VYS8 1495 aaKnown RBP27.25■■□□□ 1.95
CD44-224ENST00000526669 DCAF8L2P0C7V8 631 aa27.09■■□□□ 1.93
CD44-224ENST00000526669 NACADO15069 1562 aa26.93■■□□□ 1.9
CD44-224ENST00000526669 DCAF1Q9Y4B6 1507 aa26.91■■□□□ 1.9
CD44-224ENST00000526669 RB1CC1Q8TDY2 1594 aa26.91■■□□□ 1.9
CD44-224ENST00000526669 MYO15BQ96JP2 1530 aa26.82■■□□□ 1.88
CD44-224ENST00000526669 UNC13AQ9UPW8 1703 aa26.54■■□□□ 1.84
CD44-224ENST00000526669 SCRIBQ14160 1630 aa26.43■■□□□ 1.82
CD44-224ENST00000526669 SHROOM4Q9ULL8 1493 aa26.13■■□□□ 1.77
CD44-224ENST00000526669 BICRAQ9NZM4 1560 aa26.12■■□□□ 1.77
CD44-224ENST00000526669 PABPN1Q86U42 306 aaKnown RBP eCLIP26.02■■□□□ 1.76
CD44-224ENST00000526669 EIF4G1Q04637 1599 aaKnown RBP25.37■■□□□ 1.65
CD44-224ENST00000526669 CECR2Q9BXF3 1484 aa25.37■■□□□ 1.65
CD44-224ENST00000526669 SMARCA4P51532 1647 aa25.27■■□□□ 1.64
CD44-224ENST00000526669 BAZ1AQ9NRL2 1556 aaPredicted RBP25.22■■□□□ 1.63
CD44-224ENST00000526669 CC2D2AQ9P2K1 1620 aa25.2■■□□□ 1.62
CD44-224ENST00000526669 MROH2BQ7Z745 1585 aa25.17■■□□□ 1.62
CD44-224ENST00000526669 DNAJC5BQ9UF47 199 aa25.06■■□□□ 1.6
CD44-224ENST00000526669 WIZO95785 1651 aa25.01■■□□□ 1.59
CD44-224ENST00000526669 RSF1Q96T23 1441 aaPredicted RBP24.97■■□□□ 1.59
CD44-224ENST00000526669 SMARCA2P51531 1590 aa24.93■■□□□ 1.58
CD44-224ENST00000526669 ATAD2BQ9ULI0 1458 aa24.93■■□□□ 1.58
CD44-224ENST00000526669 PEG3Q9GZU2 1588 aa24.93■■□□□ 1.58
CD44-224ENST00000526669 NCAPD3P42695 1498 aa24.78■■□□□ 1.56
CD44-224ENST00000526669 BAZ1BQ9UIG0 1483 aaKnown RBP24.78■■□□□ 1.56
CD44-224ENST00000526669 HMGXB3Q12766 1538 aa24.78■■□□□ 1.56
CD44-224ENST00000526669 SUPT5HO00267 1087 aaKnown RBP24.74■■□□□ 1.55
CD44-224ENST00000526669 TOP2AP11388 1531 aaKnown RBP24.67■■□□□ 1.54
CD44-224ENST00000526669 CCDC88BA6NC98 1476 aa24.36■■□□□ 1.49
CD44-224ENST00000526669 NESP48681 1621 aa24.21■■□□□ 1.47
CD44-224ENST00000526669 PRDM2Q13029 1718 aa24.19■■□□□ 1.46
CD44-224ENST00000526669 LAMC3Q9Y6N6 1575 aa24.16■■□□□ 1.46
CD44-224ENST00000526669 CADPSQ9ULU8 1353 aa24.11■■□□□ 1.45
CD44-224ENST00000526669 CFTRP13569 1480 aa24.07■■□□□ 1.44
CD44-224ENST00000526669 KIF21AQ7Z4S6 1674 aa24.06■■□□□ 1.44
CD44-224ENST00000526669 ERCC6Q03468 1493 aa23.91■■□□□ 1.42
CD44-224ENST00000526669 PDS5BQ9NTI5 1447 aa23.91■■□□□ 1.42
CD44-224ENST00000526669 FANCD2Q9BXW9 1451 aa23.89■■□□□ 1.42
CD44-224ENST00000526669 CEP164Q9UPV0 1460 aa23.83■■□□□ 1.41
CD44-224ENST00000526669 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
CD44-224ENST00000526669 ABCC8Q09428 1581 aa23.71■■□□□ 1.39
CD44-224ENST00000526669 MRC2Q9UBG0 1479 aa23.7■■□□□ 1.38
CD44-224ENST00000526669 URB2Q14146 1524 aaKnown RBP23.66■■□□□ 1.38
CD44-224ENST00000526669 DNMBPQ6XZF7 1577 aa23.61■■□□□ 1.37
CD44-224ENST00000526669 WDR62O43379 1518 aa23.61■■□□□ 1.37
CD44-224ENST00000526669 CUX1P39880 1505 aa23.59■■□□□ 1.37
CD44-224ENST00000526669 TOPBP1Q92547 1522 aa23.59■■□□□ 1.37
CD44-224ENST00000526669 SYNJ1O43426 1573 aa23.57■■□□□ 1.36
CD44-224ENST00000526669 BIVM-ERCC5R4GMW8 1640 aa23.55■■□□□ 1.36
CD44-224ENST00000526669 WRNQ14191 1432 aaPredicted RBP eCLIP23.54■■□□□ 1.36
CD44-224ENST00000526669 TOP2BQ02880 1626 aa23.5■■□□□ 1.35
CD44-224ENST00000526669 FGD5Q6ZNL6 1462 aa23.43■■□□□ 1.34
CD44-224ENST00000526669 CUX2O14529 1486 aa23.43■■□□□ 1.34
CD44-224ENST00000526669 POLA1P09884 1462 aaPredicted RBP23.4■■□□□ 1.34
CD44-224ENST00000526669 RAD54L2Q9Y4B4 1467 aa23.33■■□□□ 1.33
CD44-224ENST00000526669 WDR97A6NE52 1622 aa23.33■■□□□ 1.32
CD44-224ENST00000526669 TARBP1Q13395 1621 aaKnown RBP23.33■■□□□ 1.32
CD44-224ENST00000526669 CHIC1Q5VXU3 224 aa23.3■■□□□ 1.32
CD44-224ENST00000526669 SOGA1O94964 1423 aa23.27■■□□□ 1.32
CD44-224ENST00000526669 TRIM41Q8WV44 630 aa23.27■■□□□ 1.32
CD44-224ENST00000526669 IFT140Q96RY7 1462 aa23.27■■□□□ 1.32
CD44-224ENST00000526669 ZNF608Q9ULD9 1512 aaPredicted RBP23.2■■□□□ 1.3
CD44-224ENST00000526669 EIF4G3O43432 1585 aaKnown RBP23.18■■□□□ 1.3
CD44-224ENST00000526669 ABCA10Q8WWZ4 1543 aa23.18■■□□□ 1.3
CD44-224ENST00000526669 PBRM1Q86U86 1689 aa23.15■■□□□ 1.3
CD44-224ENST00000526669 ABCA5Q8WWZ7 1642 aa23.12■■□□□ 1.29
CD44-224ENST00000526669 TDRD9Q8NDG6 1382 aaKnown RBP23.12■■□□□ 1.29
CD44-224ENST00000526669 AQRO60306 1485 aaKnown RBP eCLIP23.11■■□□□ 1.29
CD44-224ENST00000526669 GAPVD1Q14C86 1478 aa23.04■■□□□ 1.28
CD44-224ENST00000526669 RUSC2Q8N2Y8 1516 aa23.03■■□□□ 1.28
CD44-224ENST00000526669 KIF27Q86VH2 1401 aa22.99■■□□□ 1.27
CD44-224ENST00000526669 GRIN2BQ13224 1484 aa22.96■■□□□ 1.27
CD44-224ENST00000526669 SNAPC4Q5SXM2 1469 aa22.92■■□□□ 1.26
CD44-224ENST00000526669 ERICH3Q5RHP9 1530 aa22.92■■□□□ 1.26
CD44-224ENST00000526669 CHD1O14646 1710 aa22.91■■□□□ 1.26
CD44-224ENST00000526669 FAM9AQ8IZU1 332 aaPredicted RBP22.89■■□□□ 1.25
CD44-224ENST00000526669 ADAMTS12P58397 1594 aa22.88■■□□□ 1.25
CD44-224ENST00000526669 CUL7Q14999 1698 aa22.87■■□□□ 1.25
CD44-224ENST00000526669 MAGI1Q96QZ7 1491 aaPredicted RBP22.85■■□□□ 1.25
CD44-224ENST00000526669 IGF1RP08069 1367 aa22.82■■□□□ 1.24
CD44-224ENST00000526669 EEA1Q15075 1411 aa22.81■■□□□ 1.24
CD44-224ENST00000526669 FHAD1B1AJZ9 1412 aa22.75■■□□□ 1.23
CD44-224ENST00000526669 SYNJ2O15056 1496 aa22.75■■□□□ 1.23
CD44-224ENST00000526669 FBLN2P98095 1184 aa22.75■■□□□ 1.23
CD44-224ENST00000526669 CSRNP3Q8WYN3 585 aa22.73■■□□□ 1.23
CD44-224ENST00000526669 CARMIL1Q5VZK9 1371 aa22.73■■□□□ 1.23
CD44-224ENST00000526669 GRIN2AQ12879 1464 aa22.69■■□□□ 1.22
CD44-224ENST00000526669 CHMP7Q8WUX9 453 aaPredicted RBP22.69■■□□□ 1.22
CD44-224ENST00000526669 KIF21BO75037 1637 aa22.67■■□□□ 1.22
CD44-224ENST00000526669 PRXQ9BXM0 1461 aa22.66■■□□□ 1.22
CD44-224ENST00000526669 RAPGEF2Q9Y4G8 1499 aa22.66■■□□□ 1.22
CD44-224ENST00000526669 EHMT2Q96KQ7 1210 aa22.64■■□□□ 1.21
CD44-224ENST00000526669 CEP170Q5SW79 1584 aa22.63■■□□□ 1.21
CD44-224ENST00000526669 CTTNBP2Q8WZ74 1663 aa22.62■■□□□ 1.21
CD44-224ENST00000526669 NUP160Q12769 1436 aa22.53■■□□□ 1.2
CD44-224ENST00000526669 GOLGA3Q08378 1498 aa22.53■■□□□ 1.2
CD44-224ENST00000526669 CLASP1Q7Z460 1538 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms