RNA–Protein interactions for RNA: ENST00000524556.1

CSTF3-204, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 3

Gene CSTF3, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-204ENST00000524556 RUSC2Q8N2Y8 1516 aa26.24■■□□□ 1.79
CSTF3-204ENST00000524556 NPM1P06748 294 aaKnown RBP eCLIP26.17■■□□□ 1.78
CSTF3-204ENST00000524556 FAM69CQ0P6D2 419 aa26.16■■□□□ 1.78
CSTF3-204ENST00000524556 ABCC10Q5T3U5 1492 aa26.16■■□□□ 1.78
CSTF3-204ENST00000524556 MAPKBP1O60336 1514 aa26.14■■□□□ 1.77
CSTF3-204ENST00000524556 ADCY10Q96PN6 1610 aa26.11■■□□□ 1.77
CSTF3-204ENST00000524556 KIAA0586Q9BVV6 1533 aa26.09■■□□□ 1.77
CSTF3-204ENST00000524556 IGF1RP08069 1367 aa26.07■■□□□ 1.76
CSTF3-204ENST00000524556 DIP2BQ9P265 1576 aa26.07■■□□□ 1.76
CSTF3-204ENST00000524556 CUL7Q14999 1698 aa26.03■■□□□ 1.76
CSTF3-204ENST00000524556 KIF27Q86VH2 1401 aa26.02■■□□□ 1.76
CSTF3-204ENST00000524556 TSPOAP1O95153 1857 aa25.95■■□□□ 1.74
CSTF3-204ENST00000524556 KDM6BO15054 1643 aa25.93■■□□□ 1.74
CSTF3-204ENST00000524556 PTPRGP23470 1445 aa25.91■■□□□ 1.74
CSTF3-204ENST00000524556 CARMIL1Q5VZK9 1371 aa25.88■■□□□ 1.73
CSTF3-204ENST00000524556 KDM4FA0A1W2PPD8 638 aa25.85■■□□□ 1.73
CSTF3-204ENST00000524556 TNIKQ9UKE5 1360 aa25.84■■□□□ 1.73
CSTF3-204ENST00000524556 CARMIL2Q6F5E8 1435 aa25.84■■□□□ 1.73
CSTF3-204ENST00000524556 TTBK1Q5TCY1 1321 aaPredicted RBP25.83■■□□□ 1.73
CSTF3-204ENST00000524556 ABCC2Q92887 1545 aa25.81■■□□□ 1.72
CSTF3-204ENST00000524556 IQGAP2Q13576 1575 aa25.78■■□□□ 1.72
CSTF3-204ENST00000524556 PLB1Q6P1J6 1458 aa25.75■■□□□ 1.71
CSTF3-204ENST00000524556 ASXL2Q76L83 1435 aa25.75■■□□□ 1.71
CSTF3-204ENST00000524556 GLI2P10070 1586 aa25.74■■□□□ 1.71
CSTF3-204ENST00000524556 UHRF1BP1LA0JNW5 1464 aa25.73■■□□□ 1.71
CSTF3-204ENST00000524556 PPRC1Q5VV67 1664 aaKnown RBP25.72■■□□□ 1.71
CSTF3-204ENST00000524556 UACAQ9BZF9 1416 aa25.71■■□□□ 1.71
CSTF3-204ENST00000524556 DISP1Q96F81 1524 aa25.69■■□□□ 1.7
CSTF3-204ENST00000524556 KDM5BQ9UGL1 1544 aa25.63■■□□□ 1.69
CSTF3-204ENST00000524556 UGGT2Q9NYU1 1516 aa25.62■■□□□ 1.69
CSTF3-204ENST00000524556 RAPGEF2Q9Y4G8 1499 aa25.61■■□□□ 1.69
CSTF3-204ENST00000524556 EPRSP07814 1512 aaKnown RBP25.6■■□□□ 1.69
CSTF3-204ENST00000524556 MAP3K4Q9Y6R4 1608 aa25.59■■□□□ 1.69
CSTF3-204ENST00000524556 ZCCHC11Q5TAX3 1644 aaKnown RBP25.57■■□□□ 1.68
CSTF3-204ENST00000524556 COL17A1Q9UMD9 1497 aaPredicted RBP25.56■■□□□ 1.68
CSTF3-204ENST00000524556 KIAA0556O60303 1618 aa25.55■■□□□ 1.68
CSTF3-204ENST00000524556 ADGRL1O94910 1474 aa25.53■■□□□ 1.68
CSTF3-204ENST00000524556 TEX14Q8IWB6 1497 aa25.53■■□□□ 1.68
CSTF3-204ENST00000524556 WDR7Q9Y4E6 1490 aa25.44■■□□□ 1.66
CSTF3-204ENST00000524556 CTTNBP2Q8WZ74 1663 aa25.42■■□□□ 1.66
CSTF3-204ENST00000524556 ILDR1Q86SU0 546 aaPredicted RBP25.39■■□□□ 1.66
CSTF3-204ENST00000524556 GOLGA3Q08378 1498 aa25.38■■□□□ 1.65
CSTF3-204ENST00000524556 ABCA8O94911 1581 aa25.35■■□□□ 1.65
CSTF3-204ENST00000524556 CFAP43Q8NDM7 1665 aa25.34■■□□□ 1.65
CSTF3-204ENST00000524556 CD109Q6YHK3 1445 aa25.34■■□□□ 1.65
CSTF3-204ENST00000524556 MAGI3Q5TCQ9 1506 aa25.33■■□□□ 1.65
CSTF3-204ENST00000524556 KCNH8Q96L42 1107 aa25.33■■□□□ 1.65
CSTF3-204ENST00000524556 HECW2Q9P2P5 1572 aa25.3■■□□□ 1.64
CSTF3-204ENST00000524556 PRXQ9BXM0 1461 aa25.26■■□□□ 1.63
CSTF3-204ENST00000524556 FAM9AQ8IZU1 332 aaPredicted RBP25.16■■□□□ 1.62
CSTF3-204ENST00000524556 ARAP3Q8WWN8 1544 aa25.16■■□□□ 1.62
CSTF3-204ENST00000524556 KIF21BO75037 1637 aa25.15■■□□□ 1.62
CSTF3-204ENST00000524556 ATP10BO94823 1461 aa25.15■■□□□ 1.62
CSTF3-204ENST00000524556 ARID3CA6NKF2 412 aa25.13■■□□□ 1.61
CSTF3-204ENST00000524556 P3H3Q8IVL6 736 aa25.13■■□□□ 1.61
CSTF3-204ENST00000524556 ABCA9Q8IUA7 1624 aa25.08■■□□□ 1.61
CSTF3-204ENST00000524556 PHLDB1Q86UU1 1377 aa25.07■■□□□ 1.6
CSTF3-204ENST00000524556 SAMD9Q5K651 1589 aa25.04■■□□□ 1.6
CSTF3-204ENST00000524556 RAPGEF6Q8TEU7 1601 aa25.01■■□□□ 1.59
CSTF3-204ENST00000524556 RAPGEF3O95398 923 aa24.99■■□□□ 1.59
CSTF3-204ENST00000524556 ADAMTSL3P82987 1691 aa24.99■■□□□ 1.59
CSTF3-204ENST00000524556 CSRNP3Q8WYN3 585 aa24.99■■□□□ 1.59
CSTF3-204ENST00000524556 NEO1Q92859 1461 aa24.99■■□□□ 1.59
CSTF3-204ENST00000524556 PTPRMP28827 1452 aa24.96■■□□□ 1.59
CSTF3-204ENST00000524556 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.95■■□□□ 1.58
CSTF3-204ENST00000524556 HNRNPUL2Q1KMD3 747 aaKnown RBP24.95■■□□□ 1.58
CSTF3-204ENST00000524556 NUP153P49790 1475 aaKnown RBP24.91■■□□□ 1.58
CSTF3-204ENST00000524556 FRMPD1Q5SYB0 1578 aa24.91■■□□□ 1.58
CSTF3-204ENST00000524556 BCORL1Q5H9F3 1711 aa24.89■■□□□ 1.58
CSTF3-204ENST00000524556 ARID4BQ4LE39 1312 aaPredicted RBP24.86■■□□□ 1.57
CSTF3-204ENST00000524556 FHOD3Q2V2M9 1422 aa24.85■■□□□ 1.57
CSTF3-204ENST00000524556 MADDQ8WXG6 1647 aa24.84■■□□□ 1.57
CSTF3-204ENST00000524556 RANGAP1P46060 587 aaPredicted RBP24.84■■□□□ 1.57
CSTF3-204ENST00000524556 FBXO41Q8TF61 875 aa24.84■■□□□ 1.57
CSTF3-204ENST00000524556 PLEKHD1A6NEE1 506 aa24.83■■□□□ 1.57
CSTF3-204ENST00000524556 EEA1Q15075 1411 aa24.81■■□□□ 1.56
CSTF3-204ENST00000524556 RICTORQ6R327 1708 aa24.81■■□□□ 1.56
CSTF3-204ENST00000524556 DENND4BO75064 1496 aaPredicted RBP24.8■■□□□ 1.56
CSTF3-204ENST00000524556 ARHGEF40Q8TER5 1519 aa24.8■■□□□ 1.56
CSTF3-204ENST00000524556 AKNAQ7Z591 1439 aa24.79■■□□□ 1.56
CSTF3-204ENST00000524556 PCF11O94913 1555 aaKnown RBP24.78■■□□□ 1.56
CSTF3-204ENST00000524556 CFAP74Q9C0B2 1584 aa24.76■■□□□ 1.55
CSTF3-204ENST00000524556 FANCAO15360 1455 aa24.76■■□□□ 1.55
CSTF3-204ENST00000524556 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.76■■□□□ 1.55
CSTF3-204ENST00000524556 LMTK3Q96Q04 1460 aa24.75■■□□□ 1.55
CSTF3-204ENST00000524556 RIMS1Q86UR5 1692 aaKnown RBP24.75■■□□□ 1.55
CSTF3-204ENST00000524556 EFCAB5A4FU69 1503 aa24.71■■□□□ 1.55
CSTF3-204ENST00000524556 TTC37Q6PGP7 1564 aa24.71■■□□□ 1.55
CSTF3-204ENST00000524556 ZMYM4Q5VZL5 1548 aa24.7■■□□□ 1.54
CSTF3-204ENST00000524556 POGZQ7Z3K3 1410 aa24.68■■□□□ 1.54
CSTF3-204ENST00000524556 ZFYVE16Q7Z3T8 1539 aa24.66■■□□□ 1.54
CSTF3-204ENST00000524556 SIGLEC1Q9BZZ2 1709 aa24.66■■□□□ 1.54
CSTF3-204ENST00000524556 MAGI2Q86UL8 1455 aa24.65■■□□□ 1.54
CSTF3-204ENST00000524556 YEATS2Q9ULM3 1422 aa24.65■■□□□ 1.54
CSTF3-204ENST00000524556 CDK13Q14004 1512 aaKnown RBP24.63■■□□□ 1.53
CSTF3-204ENST00000524556 HECW1Q76N89 1606 aa24.62■■□□□ 1.53
CSTF3-204ENST00000524556 HSPA2P54652 639 aa24.61■■□□□ 1.53
CSTF3-204ENST00000524556 PLPPR3Q6T4P5 718 aa24.61■■□□□ 1.53
CSTF3-204ENST00000524556 PLCH2O75038 1416 aa24.61■■□□□ 1.53
CSTF3-204ENST00000524556 SCAPERQ9BY12 1400 aa24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms