RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 RUSC2Q8N2Y8 1516 aa15.96■□□□□ 0.15
HDAC3-215ENST00000519474 SHROOM2Q13796 1616 aa15.95■□□□□ 0.14
HDAC3-215ENST00000519474 KIAA0586Q9BVV6 1533 aa15.94■□□□□ 0.14
HDAC3-215ENST00000519474 CUL7Q14999 1698 aa15.89■□□□□ 0.13
HDAC3-215ENST00000519474 RAPGEF2Q9Y4G8 1499 aa15.84■□□□□ 0.13
HDAC3-215ENST00000519474 NPM1P06748 294 aaKnown RBP eCLIP15.79■□□□□ 0.12
HDAC3-215ENST00000519474 CSRNP3Q8WYN3 585 aa15.79■□□□□ 0.12
HDAC3-215ENST00000519474 PTPRGP23470 1445 aa15.78■□□□□ 0.12
HDAC3-215ENST00000519474 TTBK1Q5TCY1 1321 aaPredicted RBP15.78■□□□□ 0.12
HDAC3-215ENST00000519474 CARMIL2Q6F5E8 1435 aa15.75■□□□□ 0.11
HDAC3-215ENST00000519474 TNIKQ9UKE5 1360 aa15.75■□□□□ 0.11
HDAC3-215ENST00000519474 PRXQ9BXM0 1461 aa15.74■□□□□ 0.11
HDAC3-215ENST00000519474 CHIC1Q5VXU3 224 aa15.73■□□□□ 0.11
HDAC3-215ENST00000519474 IQGAP2Q13576 1575 aa15.73■□□□□ 0.11
HDAC3-215ENST00000519474 DISP1Q96F81 1524 aa15.71■□□□□ 0.11
HDAC3-215ENST00000519474 FAM69CQ0P6D2 419 aa15.69■□□□□ 0.1
HDAC3-215ENST00000519474 FAM9AQ8IZU1 332 aaPredicted RBP15.69■□□□□ 0.1
HDAC3-215ENST00000519474 UGGT2Q9NYU1 1516 aa15.68■□□□□ 0.1
HDAC3-215ENST00000519474 ADCY10Q96PN6 1610 aa15.67■□□□□ 0.1
HDAC3-215ENST00000519474 UACAQ9BZF9 1416 aa15.63■□□□□ 0.09
HDAC3-215ENST00000519474 ABCC10Q5T3U5 1492 aa15.63■□□□□ 0.09
HDAC3-215ENST00000519474 EEA1Q15075 1411 aa15.61■□□□□ 0.09
HDAC3-215ENST00000519474 P3H3Q8IVL6 736 aa15.61■□□□□ 0.09
HDAC3-215ENST00000519474 UHRF1BP1LA0JNW5 1464 aa15.6■□□□□ 0.09
HDAC3-215ENST00000519474 MAPKBP1O60336 1514 aa15.6■□□□□ 0.09
HDAC3-215ENST00000519474 ABCC2Q92887 1545 aa15.59■□□□□ 0.09
HDAC3-215ENST00000519474 KIF13AQ9H1H9 1805 aa15.58■□□□□ 0.08
HDAC3-215ENST00000519474 KIAA0556O60303 1618 aa15.57■□□□□ 0.08
HDAC3-215ENST00000519474 GOLGA3Q08378 1498 aa15.56■□□□□ 0.08
HDAC3-215ENST00000519474 CTTNBP2Q8WZ74 1663 aa15.56■□□□□ 0.08
HDAC3-215ENST00000519474 ASXL2Q76L83 1435 aa15.55■□□□□ 0.08
HDAC3-215ENST00000519474 KDM5BQ9UGL1 1544 aa15.54■□□□□ 0.08
HDAC3-215ENST00000519474 PLB1Q6P1J6 1458 aa15.53■□□□□ 0.08
HDAC3-215ENST00000519474 RANGAP1P46060 587 aaPredicted RBP15.53■□□□□ 0.08
HDAC3-215ENST00000519474 DIP2BQ9P265 1576 aa15.52■□□□□ 0.07
HDAC3-215ENST00000519474 EHMT2Q96KQ7 1210 aa15.5■□□□□ 0.07
HDAC3-215ENST00000519474 ABCA8O94911 1581 aa15.47■□□□□ 0.07
HDAC3-215ENST00000519474 UBTFP17480 764 aaKnown RBP15.47■□□□□ 0.07
HDAC3-215ENST00000519474 KCNH8Q96L42 1107 aa15.47■□□□□ 0.07
HDAC3-215ENST00000519474 ARID3CA6NKF2 412 aa15.45■□□□□ 0.06
HDAC3-215ENST00000519474 EPRSP07814 1512 aaKnown RBP15.43■□□□□ 0.06
HDAC3-215ENST00000519474 ZCCHC11Q5TAX3 1644 aaKnown RBP15.43■□□□□ 0.06
HDAC3-215ENST00000519474 GLI2P10070 1586 aa15.43■□□□□ 0.06
HDAC3-215ENST00000519474 TSPOAP1O95153 1857 aa15.42■□□□□ 0.06
HDAC3-215ENST00000519474 ATP10BO94823 1461 aa15.42■□□□□ 0.06
HDAC3-215ENST00000519474 KIF21BO75037 1637 aa15.42■□□□□ 0.06
HDAC3-215ENST00000519474 SAMD9Q5K651 1589 aa15.41■□□□□ 0.06
HDAC3-215ENST00000519474 WDR7Q9Y4E6 1490 aa15.39■□□□□ 0.05
HDAC3-215ENST00000519474 FHOD3Q2V2M9 1422 aa15.38■□□□□ 0.05
HDAC3-215ENST00000519474 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.36■□□□□ 0.05
HDAC3-215ENST00000519474 HNRNPUL2Q1KMD3 747 aaKnown RBP15.36■□□□□ 0.05
HDAC3-215ENST00000519474 COL17A1Q9UMD9 1497 aaPredicted RBP15.35■□□□□ 0.05
HDAC3-215ENST00000519474 PPRC1Q5VV67 1664 aaKnown RBP15.34■□□□□ 0.05
HDAC3-215ENST00000519474 CD109Q6YHK3 1445 aa15.34■□□□□ 0.05
HDAC3-215ENST00000519474 AEBP2Q6ZN18 517 aaPredicted RBP15.33■□□□□ 0.04
HDAC3-215ENST00000519474 PLEKHD1A6NEE1 506 aa15.32■□□□□ 0.04
HDAC3-215ENST00000519474 MAP3K4Q9Y6R4 1608 aa15.32■□□□□ 0.04
HDAC3-215ENST00000519474 KDM6BO15054 1643 aa15.31■□□□□ 0.04
HDAC3-215ENST00000519474 RAPGEF6Q8TEU7 1601 aa15.31■□□□□ 0.04
HDAC3-215ENST00000519474 NUP153P49790 1475 aaKnown RBP15.3■□□□□ 0.04
HDAC3-215ENST00000519474 EFCAB5A4FU69 1503 aa15.27■□□□□ 0.04
HDAC3-215ENST00000519474 MAGI3Q5TCQ9 1506 aa15.27■□□□□ 0.04
HDAC3-215ENST00000519474 TEX14Q8IWB6 1497 aa15.27■□□□□ 0.04
HDAC3-215ENST00000519474 ARHGAP35Q9NRY4 1499 aa15.27■□□□□ 0.04
HDAC3-215ENST00000519474 KDM4FA0A1W2PPD8 638 aa15.27■□□□□ 0.04
HDAC3-215ENST00000519474 ATP1B4Q9UN42 357 aaPredicted RBP15.27■□□□□ 0.04
HDAC3-215ENST00000519474 CFAP43Q8NDM7 1665 aa15.22■□□□□ 0.03
HDAC3-215ENST00000519474 FMN1Q68DA7 1419 aa15.21■□□□□ 0.03
HDAC3-215ENST00000519474 RAPGEF3O95398 923 aa15.18■□□□□ 0.02
HDAC3-215ENST00000519474 PHLDB1Q86UU1 1377 aa15.18■□□□□ 0.02
HDAC3-215ENST00000519474 ABCA9Q8IUA7 1624 aa15.17■□□□□ 0.02
HDAC3-215ENST00000519474 CDK13Q14004 1512 aaKnown RBP15.17■□□□□ 0.02
HDAC3-215ENST00000519474 CDK11AQ9UQ88 783 aaPredicted RBP15.16■□□□□ 0.02
HDAC3-215ENST00000519474 ARAP3Q8WWN8 1544 aa15.16■□□□□ 0.02
HDAC3-215ENST00000519474 LOC105371045A0A1W2PR82 267 aa15.14■□□□□ 0.01
HDAC3-215ENST00000519474 NEO1Q92859 1461 aa15.12■□□□□ 0.01
HDAC3-215ENST00000519474 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.12■□□□□ 0.01
HDAC3-215ENST00000519474 CLIP1P30622 1438 aa15.11■□□□□ 0.01
HDAC3-215ENST00000519474 AKNAQ7Z591 1439 aa15.09■□□□□ 0.01
HDAC3-215ENST00000519474 CASKIN1Q8WXD9 1431 aa15.09■□□□□ 0.01
HDAC3-215ENST00000519474 PLCH2O75038 1416 aa15.09■□□□□ 0.01
HDAC3-215ENST00000519474 HECW1Q76N89 1606 aa15.07■□□□□ 0
HDAC3-215ENST00000519474 EFCAB2Q5VUJ9 269 aa15.07■□□□□ 0
HDAC3-215ENST00000519474 TROQ12816 1431 aaPredicted RBP15.06■□□□□ 0
HDAC3-215ENST00000519474 FANCAO15360 1455 aa15.06■□□□□ 0
HDAC3-215ENST00000519474 ADGRL1O94910 1474 aa15.04■□□□□ -0
HDAC3-215ENST00000519474 LRRIQ1Q96JM4 1722 aa15.03■□□□□ -0
HDAC3-215ENST00000519474 TTC37Q6PGP7 1564 aa15.03■□□□□ -0
HDAC3-215ENST00000519474 DENND4BO75064 1496 aaPredicted RBP15.03■□□□□ -0
HDAC3-215ENST00000519474 SCAPERQ9BY12 1400 aa15.01□□□□□ -0.01
HDAC3-215ENST00000519474 CCDC18Q5T9S5 1454 aa14.99□□□□□ -0.01
HDAC3-215ENST00000519474 PCF11O94913 1555 aaKnown RBP14.98□□□□□ -0.01
HDAC3-215ENST00000519474 AFAP1Q8N556 730 aa14.98□□□□□ -0.01
HDAC3-215ENST00000519474 KIF14Q15058 1648 aa14.98□□□□□ -0.01
HDAC3-215ENST00000519474 CEP162Q5TB80 1403 aa14.98□□□□□ -0.01
HDAC3-215ENST00000519474 FRMPD1Q5SYB0 1578 aa14.98□□□□□ -0.01
HDAC3-215ENST00000519474 FYCO1Q9BQS8 1478 aa14.97□□□□□ -0.01
HDAC3-215ENST00000519474 ARID4BQ4LE39 1312 aaPredicted RBP14.96□□□□□ -0.01
HDAC3-215ENST00000519474 RICTORQ6R327 1708 aa14.94□□□□□ -0.02
HDAC3-215ENST00000519474 YEATS2Q9ULM3 1422 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 106.6 ms