RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 NISCHQ9Y2I1 1504 aa22.94■■□□□ 1.26
HDAC3-215ENST00000519474 CCDC180Q9P1Z9 1646 aa20.33■□□□□ 0.84
HDAC3-215ENST00000519474 ABCC9O60706 1549 aa20.24■□□□□ 0.83
HDAC3-215ENST00000519474 DCAF8L2P0C7V8 631 aa19.41■□□□□ 0.7
HDAC3-215ENST00000519474 RB1CC1Q8TDY2 1594 aa19.3■□□□□ 0.68
HDAC3-215ENST00000519474 NACADO15069 1562 aa19.26■□□□□ 0.67
HDAC3-215ENST00000519474 MYO15BQ96JP2 1530 aa19.08■□□□□ 0.64
HDAC3-215ENST00000519474 ZCCHC6Q5VYS8 1495 aaKnown RBP19.01■□□□□ 0.63
HDAC3-215ENST00000519474 PABPN1Q86U42 306 aaKnown RBP eCLIP19■□□□□ 0.63
HDAC3-215ENST00000519474 DNAJC5BQ9UF47 199 aa18.95■□□□□ 0.62
HDAC3-215ENST00000519474 DCAF1Q9Y4B6 1507 aa18.92■□□□□ 0.62
HDAC3-215ENST00000519474 UNC13AQ9UPW8 1703 aa18.83■□□□□ 0.61
HDAC3-215ENST00000519474 BICRAQ9NZM4 1560 aa18.78■□□□□ 0.6
HDAC3-215ENST00000519474 SCRIBQ14160 1630 aa18.59■□□□□ 0.57
HDAC3-215ENST00000519474 SHROOM4Q9ULL8 1493 aa18.46■□□□□ 0.54
HDAC3-215ENST00000519474 EIF4G1Q04637 1599 aaKnown RBP18.26■□□□□ 0.51
HDAC3-215ENST00000519474 CC2D2AQ9P2K1 1620 aa18.25■□□□□ 0.51
HDAC3-215ENST00000519474 CECR2Q9BXF3 1484 aa18.2■□□□□ 0.5
HDAC3-215ENST00000519474 NCAPD3P42695 1498 aa17.85■□□□□ 0.45
HDAC3-215ENST00000519474 ATAD2BQ9ULI0 1458 aa17.81■□□□□ 0.44
HDAC3-215ENST00000519474 SMARCA4P51532 1647 aa17.77■□□□□ 0.44
HDAC3-215ENST00000519474 BAZ1AQ9NRL2 1556 aaPredicted RBP17.73■□□□□ 0.43
HDAC3-215ENST00000519474 SMARCA2P51531 1590 aa17.7■□□□□ 0.42
HDAC3-215ENST00000519474 MROH2BQ7Z745 1585 aa17.7■□□□□ 0.42
HDAC3-215ENST00000519474 HMGXB3Q12766 1538 aa17.62■□□□□ 0.41
HDAC3-215ENST00000519474 PEG3Q9GZU2 1588 aa17.61■□□□□ 0.41
HDAC3-215ENST00000519474 BAZ1BQ9UIG0 1483 aaKnown RBP17.59■□□□□ 0.41
HDAC3-215ENST00000519474 NESP48681 1621 aa17.47■□□□□ 0.39
HDAC3-215ENST00000519474 RSF1Q96T23 1441 aaPredicted RBP17.46■□□□□ 0.39
HDAC3-215ENST00000519474 WIZO95785 1651 aa17.45■□□□□ 0.38
HDAC3-215ENST00000519474 ERCC6Q03468 1493 aa17.41■□□□□ 0.38
HDAC3-215ENST00000519474 CADPSQ9ULU8 1353 aa17.33■□□□□ 0.36
HDAC3-215ENST00000519474 LAMC3Q9Y6N6 1575 aa17.31■□□□□ 0.36
HDAC3-215ENST00000519474 CUX2O14529 1486 aa17.3■□□□□ 0.36
HDAC3-215ENST00000519474 PDS5BQ9NTI5 1447 aa17.27■□□□□ 0.35
HDAC3-215ENST00000519474 TOP2AP11388 1531 aaKnown RBP17.21■□□□□ 0.35
HDAC3-215ENST00000519474 DNAJC5Q9H3Z4 198 aa17.18■□□□□ 0.34
HDAC3-215ENST00000519474 CFTRP13569 1480 aa17.15■□□□□ 0.34
HDAC3-215ENST00000519474 KIF21AQ7Z4S6 1674 aa17.14■□□□□ 0.33
HDAC3-215ENST00000519474 THOC2Q8NI27 1593 aaKnown RBP17.13■□□□□ 0.33
HDAC3-215ENST00000519474 CCDC88BA6NC98 1476 aa17.12■□□□□ 0.33
HDAC3-215ENST00000519474 FANCD2Q9BXW9 1451 aa17.08■□□□□ 0.32
HDAC3-215ENST00000519474 MRC2Q9UBG0 1479 aa17.05■□□□□ 0.32
HDAC3-215ENST00000519474 CEP164Q9UPV0 1460 aa17.03■□□□□ 0.32
HDAC3-215ENST00000519474 WDR62O43379 1518 aa16.98■□□□□ 0.31
HDAC3-215ENST00000519474 SUPT5HO00267 1087 aaKnown RBP16.94■□□□□ 0.3
HDAC3-215ENST00000519474 URB2Q14146 1524 aaKnown RBP16.93■□□□□ 0.3
HDAC3-215ENST00000519474 PRDM2Q13029 1718 aa16.82■□□□□ 0.28
HDAC3-215ENST00000519474 TOPBP1Q92547 1522 aa16.78■□□□□ 0.28
HDAC3-215ENST00000519474 ABCC8Q09428 1581 aa16.77■□□□□ 0.27
HDAC3-215ENST00000519474 IFT140Q96RY7 1462 aa16.71■□□□□ 0.27
HDAC3-215ENST00000519474 OSCARQ8IYS5 282 aa16.7■□□□□ 0.26
HDAC3-215ENST00000519474 ZNF608Q9ULD9 1512 aaPredicted RBP16.7■□□□□ 0.26
HDAC3-215ENST00000519474 DNMBPQ6XZF7 1577 aa16.68■□□□□ 0.26
HDAC3-215ENST00000519474 SOGA1O94964 1423 aa16.62■□□□□ 0.25
HDAC3-215ENST00000519474 POLA1P09884 1462 aaPredicted RBP16.62■□□□□ 0.25
HDAC3-215ENST00000519474 AQRO60306 1485 aaKnown RBP eCLIP16.61■□□□□ 0.255e-7■■■■□ 25
HDAC3-215ENST00000519474 RAD54L2Q9Y4B4 1467 aa16.61■□□□□ 0.25
HDAC3-215ENST00000519474 TARBP1Q13395 1621 aaKnown RBP16.59■□□□□ 0.25
HDAC3-215ENST00000519474 CUX1P39880 1505 aa16.58■□□□□ 0.24
HDAC3-215ENST00000519474 TDRD9Q8NDG6 1382 aaKnown RBP16.57■□□□□ 0.24
HDAC3-215ENST00000519474 FGD5Q6ZNL6 1462 aa16.54■□□□□ 0.24
HDAC3-215ENST00000519474 EIF4G3O43432 1585 aaKnown RBP16.49■□□□□ 0.23
HDAC3-215ENST00000519474 FBLN2P98095 1184 aa16.49■□□□□ 0.23
HDAC3-215ENST00000519474 TRIM41Q8WV44 630 aa16.48■□□□□ 0.23
HDAC3-215ENST00000519474 CHMP7Q8WUX9 453 aaPredicted RBP16.41■□□□□ 0.22
HDAC3-215ENST00000519474 WRNQ14191 1432 aaPredicted RBP eCLIP16.41■□□□□ 0.22
HDAC3-215ENST00000519474 GRIN2BQ13224 1484 aa16.38■□□□□ 0.21
HDAC3-215ENST00000519474 ABCA10Q8WWZ4 1543 aa16.38■□□□□ 0.21
HDAC3-215ENST00000519474 GAPVD1Q14C86 1478 aa16.37■□□□□ 0.21
HDAC3-215ENST00000519474 SNAPC4Q5SXM2 1469 aa16.36■□□□□ 0.21
HDAC3-215ENST00000519474 WDR97A6NE52 1622 aa16.36■□□□□ 0.21
HDAC3-215ENST00000519474 TOP2BQ02880 1626 aa16.34■□□□□ 0.21
HDAC3-215ENST00000519474 SYNJ1O43426 1573 aa16.34■□□□□ 0.21
HDAC3-215ENST00000519474 CHD1O14646 1710 aa16.33■□□□□ 0.21
HDAC3-215ENST00000519474 MAGI1Q96QZ7 1491 aaPredicted RBP16.32■□□□□ 0.2
HDAC3-215ENST00000519474 BIVM-ERCC5R4GMW8 1640 aa16.31■□□□□ 0.2
HDAC3-215ENST00000519474 CYB5RLQ6IPT4 315 aa16.31■□□□□ 0.2
HDAC3-215ENST00000519474 RIMBP3CA6NJZ7 1639 aa16.29■□□□□ 0.2
HDAC3-215ENST00000519474 RIMBP3BA6NNM3 1639 aa16.29■□□□□ 0.2
HDAC3-215ENST00000519474 RIMBP3Q9UFD9 1639 aa16.29■□□□□ 0.2
HDAC3-215ENST00000519474 ARHGEF11O15085 1522 aa16.29■□□□□ 0.2
HDAC3-215ENST00000519474 SYNJ2O15056 1496 aa16.29■□□□□ 0.2
HDAC3-215ENST00000519474 ABCA5Q8WWZ7 1642 aa16.27■□□□□ 0.19
HDAC3-215ENST00000519474 PBRM1Q86U86 1689 aa16.22■□□□□ 0.19
HDAC3-215ENST00000519474 CLASP1Q7Z460 1538 aa16.19■□□□□ 0.18
HDAC3-215ENST00000519474 FHAD1B1AJZ9 1412 aa16.18■□□□□ 0.18
HDAC3-215ENST00000519474 GRIN2AQ12879 1464 aa16.16■□□□□ 0.18
HDAC3-215ENST00000519474 ARAP1Q96P48 1450 aa16.16■□□□□ 0.18
HDAC3-215ENST00000519474 IGF1RP08069 1367 aa16.15■□□□□ 0.18
HDAC3-215ENST00000519474 ERICH3Q5RHP9 1530 aa16.15■□□□□ 0.18
HDAC3-215ENST00000519474 NUP160Q12769 1436 aa16.11■□□□□ 0.17
HDAC3-215ENST00000519474 ADAMTS12P58397 1594 aa16.1■□□□□ 0.17
HDAC3-215ENST00000519474 KIF27Q86VH2 1401 aa16.09■□□□□ 0.17
HDAC3-215ENST00000519474 JPH4Q96JJ6 628 aa16.08■□□□□ 0.16
HDAC3-215ENST00000519474 CEP170Q5SW79 1584 aa16.07■□□□□ 0.16
HDAC3-215ENST00000519474 CARMIL1Q5VZK9 1371 aa16.01■□□□□ 0.15
HDAC3-215ENST00000519474 ERCC6L2Q5T890 1561 aa16.01■□□□□ 0.15
HDAC3-215ENST00000519474 TRHP20396 242 aaPredicted RBP16.01■□□□□ 0.15
HDAC3-215ENST00000519474 PRG4Q92954 1404 aaPredicted RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms