RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 PPP1R15AO75807 674 aaPredicted RBP25.22■■□□□ 1.63
NUP54-205ENST00000507257 CFTRP13569 1480 aa25.22■■□□□ 1.63
NUP54-205ENST00000507257 CFAP43Q8NDM7 1665 aa25.21■■□□□ 1.63
NUP54-205ENST00000507257 PRDM2Q13029 1718 aa25.2■■□□□ 1.63
NUP54-205ENST00000507257 FKBP8Q14318 412 aa25.17■■□□□ 1.62
NUP54-205ENST00000507257 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.16■■□□□ 1.62
NUP54-205ENST00000507257 FHAD1B1AJZ9 1412 aa25.13■■□□□ 1.61
NUP54-205ENST00000507257 NEFLP07196 543 aa25.12■■□□□ 1.61
NUP54-205ENST00000507257 DDX10Q13206 875 aaKnown RBP25.11■■□□□ 1.61
NUP54-205ENST00000507257 PHLDB1Q86UU1 1377 aa25.1■■□□□ 1.61
NUP54-205ENST00000507257 ITGAEP38570 1179 aa25.1■■□□□ 1.61
NUP54-205ENST00000507257 IGF1RP08069 1367 aa25.09■■□□□ 1.61
NUP54-205ENST00000507257 RBM19Q9Y4C8 960 aaKnown RBP25.06■■□□□ 1.6
NUP54-205ENST00000507257 BCANQ96GW7 911 aa25.03■■□□□ 1.6
NUP54-205ENST00000507257 ANP32CO43423 234 aa25.02■■□□□ 1.6
NUP54-205ENST00000507257 SIN3AQ96ST3 1273 aa25■■□□□ 1.59
NUP54-205ENST00000507257 BCL11AQ9H165 835 aa25■■□□□ 1.59
NUP54-205ENST00000507257 PCF11O94913 1555 aaKnown RBP25■■□□□ 1.59
NUP54-205ENST00000507257 CARMIL1Q5VZK9 1371 aa24.98■■□□□ 1.59
NUP54-205ENST00000507257 AQRO60306 1485 aaKnown RBP eCLIP24.97■■□□□ 1.59
NUP54-205ENST00000507257 FYCO1Q9BQS8 1478 aa24.96■■□□□ 1.59
NUP54-205ENST00000507257 EFCAB5A4FU69 1503 aa24.94■■□□□ 1.58
NUP54-205ENST00000507257 FGD5Q6ZNL6 1462 aa24.91■■□□□ 1.58
NUP54-205ENST00000507257 FAM50AQ14320 339 aaKnown RBP24.89■■□□□ 1.58
NUP54-205ENST00000507257 CASKIN1Q8WXD9 1431 aa24.88■■□□□ 1.57
NUP54-205ENST00000507257 FANCIQ9NVI1 1328 aa24.86■■□□□ 1.57
NUP54-205ENST00000507257 TRIM52Q96A61 297 aa24.84■■□□□ 1.57
NUP54-205ENST00000507257 ERICH6BQ5W0A0 696 aa24.84■■□□□ 1.57
NUP54-205ENST00000507257 UACAQ9BZF9 1416 aa24.84■■□□□ 1.57
NUP54-205ENST00000507257 TONSLQ96HA7 1378 aa24.83■■□□□ 1.57
NUP54-205ENST00000507257 HFM1A2PYH4 1435 aa24.82■■□□□ 1.56
NUP54-205ENST00000507257 CCDC18Q5T9S5 1454 aa24.81■■□□□ 1.56
NUP54-205ENST00000507257 FGD6Q6ZV73 1430 aa24.8■■□□□ 1.56
NUP54-205ENST00000507257 PTPN23Q9H3S7 1636 aa24.78■■□□□ 1.56
NUP54-205ENST00000507257 KDM5BQ9UGL1 1544 aa24.76■■□□□ 1.55
NUP54-205ENST00000507257 CC2D2AQ9P2K1 1620 aa24.75■■□□□ 1.55
NUP54-205ENST00000507257 CADPSQ9ULU8 1353 aa24.74■■□□□ 1.55
NUP54-205ENST00000507257 CTTNBP2Q8WZ74 1663 aa24.73■■□□□ 1.55
NUP54-205ENST00000507257 CUL7Q14999 1698 aa24.72■■□□□ 1.55
NUP54-205ENST00000507257 MSH5O43196 834 aa24.72■■□□□ 1.55
NUP54-205ENST00000507257 FMN1Q68DA7 1419 aa24.71■■□□□ 1.55
NUP54-205ENST00000507257 FHOD3Q2V2M9 1422 aa24.71■■□□□ 1.55
NUP54-205ENST00000507257 HIRIP3Q9BW71 556 aaPredicted RBP24.69■■□□□ 1.54
NUP54-205ENST00000507257 CDK11AQ9UQ88 783 aaPredicted RBP24.69■■□□□ 1.54
NUP54-205ENST00000507257 SNAPC4Q5SXM2 1469 aa24.68■■□□□ 1.54
NUP54-205ENST00000507257 MYT1LQ9UL68 1186 aa24.67■■□□□ 1.54
NUP54-205ENST00000507257 ABCA10Q8WWZ4 1543 aa24.66■■□□□ 1.54
NUP54-205ENST00000507257 NAIPQ13075 1403 aa24.66■■□□□ 1.54
NUP54-205ENST00000507257 NCOA2Q15596 1464 aa24.66■■□□□ 1.54
NUP54-205ENST00000507257 THOC2Q8NI27 1593 aaKnown RBP24.66■■□□□ 1.54
NUP54-205ENST00000507257 PTPRKQ15262 1439 aa24.63■■□□□ 1.53
NUP54-205ENST00000507257 HNRNPUQ00839 825 aaKnown RBP eCLIP24.61■■□□□ 1.53
NUP54-205ENST00000507257 DNMBPQ6XZF7 1577 aa24.59■■□□□ 1.53
NUP54-205ENST00000507257 MYOM3Q5VTT5 1437 aa24.59■■□□□ 1.53
NUP54-205ENST00000507257 HECW1Q76N89 1606 aa24.59■■□□□ 1.53
NUP54-205ENST00000507257 SAMD9Q5K651 1589 aa24.58■■□□□ 1.53
NUP54-205ENST00000507257 SUPT6HQ7KZ85 1726 aaKnown RBP24.57■■□□□ 1.52
NUP54-205ENST00000507257 PPP4R2Q9NY27 417 aa24.57■■□□□ 1.52
NUP54-205ENST00000507257 GCC2Q8IWJ2 1684 aa24.56■■□□□ 1.52
NUP54-205ENST00000507257 AKNAQ7Z591 1439 aa24.56■■□□□ 1.52
NUP54-205ENST00000507257 MTUS2Q5JR59 1369 aa24.55■■□□□ 1.52
NUP54-205ENST00000507257 EHBP1L1Q8N3D4 1523 aa24.55■■□□□ 1.52
NUP54-205ENST00000507257 CNTLNQ9NXG0 1405 aa24.54■■□□□ 1.52
NUP54-205ENST00000507257 P3H3Q8IVL6 736 aa24.54■■□□□ 1.52
NUP54-205ENST00000507257 LRRIQ1Q96JM4 1722 aa24.54■■□□□ 1.52
NUP54-205ENST00000507257 ARHGEF11O15085 1522 aa24.53■■□□□ 1.52
NUP54-205ENST00000507257 WASHC2AQ641Q2 1341 aa24.53■■□□□ 1.52
NUP54-205ENST00000507257 ATP1B4Q9UN42 357 aaPredicted RBP24.51■■□□□ 1.51
NUP54-205ENST00000507257 KIF21AQ7Z4S6 1674 aa24.51■■□□□ 1.51
NUP54-205ENST00000507257 GRIN2BQ13224 1484 aa24.51■■□□□ 1.51
NUP54-205ENST00000507257 ERICH6Q7L0X2 663 aa24.5■■□□□ 1.51
NUP54-205ENST00000507257 TCOF1Q13428 1488 aaKnown RBP24.49■■□□□ 1.51
NUP54-205ENST00000507257 UGGT2Q9NYU1 1516 aa24.49■■□□□ 1.51
NUP54-205ENST00000507257 FANCD2Q9BXW9 1451 aa24.49■■□□□ 1.51
NUP54-205ENST00000507257 POLA1P09884 1462 aaPredicted RBP24.46■■□□□ 1.51
NUP54-205ENST00000507257 HSPA5P11021 654 aaKnown RBP24.46■■□□□ 1.51
NUP54-205ENST00000507257 POLR1AO95602 1720 aaPredicted RBP24.44■■□□□ 1.5
NUP54-205ENST00000507257 ZBED9Q6R2W3 1325 aa24.44■■□□□ 1.5
NUP54-205ENST00000507257 DENND4BO75064 1496 aaPredicted RBP24.44■■□□□ 1.5
NUP54-205ENST00000507257 NCOA1Q15788 1441 aa24.44■■□□□ 1.5
NUP54-205ENST00000507257 TOPBP1Q92547 1522 aa24.44■■□□□ 1.5
NUP54-205ENST00000507257 EIF4G2P78344 907 aaKnown RBP eCLIP24.43■■□□□ 1.5
NUP54-205ENST00000507257 ABCA5Q8WWZ7 1642 aa24.43■■□□□ 1.5
NUP54-205ENST00000507257 RAD54L2Q9Y4B4 1467 aa24.41■■□□□ 1.5
NUP54-205ENST00000507257 PRKRIP1Q9H875 184 aaPredicted RBP24.37■■□□□ 1.49
NUP54-205ENST00000507257 CCDC7Q96M83 1385 aa24.37■■□□□ 1.49
NUP54-205ENST00000507257 IRX6P78412 446 aaPredicted RBP24.37■■□□□ 1.49
NUP54-205ENST00000507257 MIA2Q96PC5 1412 aa24.31■■□□□ 1.48
NUP54-205ENST00000507257 MAGI3Q5TCQ9 1506 aa24.28■■□□□ 1.48
NUP54-205ENST00000507257 CCDC184Q52MB2 194 aa24.27■■□□□ 1.48
NUP54-205ENST00000507257 RPRD2Q5VT52 1461 aaKnown RBP24.27■■□□□ 1.48
NUP54-205ENST00000507257 SPATA31E1Q6ZUB1 1445 aa24.27■■□□□ 1.48
NUP54-205ENST00000507257 SMG6Q86US8 1419 aaKnown RBP24.26■■□□□ 1.47
NUP54-205ENST00000507257 KDM6BO15054 1643 aa24.25■■□□□ 1.47
NUP54-205ENST00000507257 MRS2Q9HD23 443 aa24.24■■□□□ 1.47
NUP54-205ENST00000507257 TEX14Q8IWB6 1497 aa24.24■■□□□ 1.47
NUP54-205ENST00000507257 MPHOSPH9Q99550 1183 aa24.23■■□□□ 1.47
NUP54-205ENST00000507257 RNF123Q5XPI4 1314 aa24.23■■□□□ 1.47
NUP54-205ENST00000507257 L3MBTL2Q969R5 705 aa24.22■■□□□ 1.47
NUP54-205ENST00000507257 ROCK1Q13464 1354 aa24.2■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms