RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 NISCHQ9Y2I1 1504 aa35.22■■■■□ 3.23
NUP54-205ENST00000507257 SHROOM4Q9ULL8 1493 aa30.06■■■□□ 2.4
NUP54-205ENST00000507257 ZCCHC6Q5VYS8 1495 aaKnown RBP29.97■■■□□ 2.39
NUP54-205ENST00000507257 CCDC180Q9P1Z9 1646 aa29.82■■■□□ 2.36
NUP54-205ENST00000507257 SUPT5HO00267 1087 aaKnown RBP29.81■■■□□ 2.36
NUP54-205ENST00000507257 HRCP23327 699 aa29.77■■■□□ 2.36
NUP54-205ENST00000507257 MYO15BQ96JP2 1530 aa29.55■■■□□ 2.32
NUP54-205ENST00000507257 CHIC1Q5VXU3 224 aa29.51■■■□□ 2.32
NUP54-205ENST00000507257 DCAF1Q9Y4B6 1507 aa29.22■■■□□ 2.27
NUP54-205ENST00000507257 PCGF6Q9BYE7 350 aa29.1■■■□□ 2.25
NUP54-205ENST00000507257 PPARGC1BQ86YN6 1023 aaKnown RBP28.75■■■□□ 2.19
NUP54-205ENST00000507257 TRIM26Q12899 539 aaPredicted RBP28.61■■■□□ 2.17
NUP54-205ENST00000507257 DCAF8L2P0C7V8 631 aa28.49■■■□□ 2.15
NUP54-205ENST00000507257 LOC105371045A0A1W2PR82 267 aa28.47■■■□□ 2.15
NUP54-205ENST00000507257 ZEB1P37275 1124 aaPredicted RBP28.41■■■□□ 2.14
NUP54-205ENST00000507257 ABCC9O60706 1549 aa28.41■■■□□ 2.14
NUP54-205ENST00000507257 PELP1Q8IZL8 1130 aaKnown RBP28.3■■■□□ 2.12
NUP54-205ENST00000507257 RSF1Q96T23 1441 aaPredicted RBP28.05■■■□□ 2.08
NUP54-205ENST00000507257 RB1CC1Q8TDY2 1594 aa27.97■■■□□ 2.07
NUP54-205ENST00000507257 TRIM41Q8WV44 630 aa27.86■■■□□ 2.05
NUP54-205ENST00000507257 SCRIBQ14160 1630 aa27.74■■■□□ 2.03
NUP54-205ENST00000507257 SCAF1Q9H7N4 1312 aaKnown RBP27.73■■■□□ 2.03
NUP54-205ENST00000507257 FAM9AQ8IZU1 332 aaPredicted RBP27.44■■□□□ 1.98
NUP54-205ENST00000507257 NACADO15069 1562 aa27.35■■□□□ 1.97
NUP54-205ENST00000507257 ACIN1Q9UKV3 1341 aaKnown RBP27.34■■□□□ 1.97
NUP54-205ENST00000507257 EIF4G1Q04637 1599 aaKnown RBP27.32■■□□□ 1.96
NUP54-205ENST00000507257 MROH2BQ7Z745 1585 aa27.32■■□□□ 1.96
NUP54-205ENST00000507257 CECR2Q9BXF3 1484 aa27.28■■□□□ 1.96
NUP54-205ENST00000507257 BAZ1AQ9NRL2 1556 aaPredicted RBP27.25■■□□□ 1.95
NUP54-205ENST00000507257 WRNQ14191 1432 aaPredicted RBP eCLIP27.24■■□□□ 1.95
NUP54-205ENST00000507257 WIZO95785 1651 aa27.2■■□□□ 1.95
NUP54-205ENST00000507257 MYT1Q01538 1121 aa27.18■■□□□ 1.94
NUP54-205ENST00000507257 CCER1Q8TC90 406 aaPredicted RBP27.17■■□□□ 1.94
NUP54-205ENST00000507257 NEUROD1Q13562 356 aa27.13■■□□□ 1.93
NUP54-205ENST00000507257 CENPBP07199 599 aaPredicted RBP27.12■■□□□ 1.93
NUP54-205ENST00000507257 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.11■■□□□ 1.93
NUP54-205ENST00000507257 DIEXFQ68CQ4 756 aaKnown RBP27.06■■□□□ 1.92
NUP54-205ENST00000507257 EHMT2Q96KQ7 1210 aa26.99■■□□□ 1.91
NUP54-205ENST00000507257 GTF3C3Q9Y5Q9 886 aa26.92■■□□□ 1.9
NUP54-205ENST00000507257 TOP2AP11388 1531 aaKnown RBP26.92■■□□□ 1.9
NUP54-205ENST00000507257 TNIKQ9UKE5 1360 aa26.9■■□□□ 1.9
NUP54-205ENST00000507257 EEA1Q15075 1411 aa26.89■■□□□ 1.9
NUP54-205ENST00000507257 CEP162Q5TB80 1403 aa26.89■■□□□ 1.9
NUP54-205ENST00000507257 CCDC88BA6NC98 1476 aa26.8■■□□□ 1.88
NUP54-205ENST00000507257 ZNF316A6NFI3 1004 aaPredicted RBP26.76■■□□□ 1.87
NUP54-205ENST00000507257 SMARCA2P51531 1590 aa26.75■■□□□ 1.87
NUP54-205ENST00000507257 ABCC8Q09428 1581 aa26.75■■□□□ 1.87
NUP54-205ENST00000507257 SMARCA4P51532 1647 aa26.7■■□□□ 1.86
NUP54-205ENST00000507257 SOGA1O94964 1423 aa26.63■■□□□ 1.85
NUP54-205ENST00000507257 GOLGA3Q08378 1498 aa26.62■■□□□ 1.85
NUP54-205ENST00000507257 CSRNP3Q8WYN3 585 aa26.58■■□□□ 1.85
NUP54-205ENST00000507257 KIF21BO75037 1637 aa26.47■■□□□ 1.83
NUP54-205ENST00000507257 RUSC2Q8N2Y8 1516 aa26.44■■□□□ 1.82
NUP54-205ENST00000507257 CEP164Q9UPV0 1460 aa26.42■■□□□ 1.82
NUP54-205ENST00000507257 UBTFP17480 764 aaKnown RBP26.39■■□□□ 1.81
NUP54-205ENST00000507257 TTBK1Q5TCY1 1321 aaPredicted RBP26.36■■□□□ 1.81
NUP54-205ENST00000507257 BAZ1BQ9UIG0 1483 aaKnown RBP26.33■■□□□ 1.81
NUP54-205ENST00000507257 MIER1Q8N108 512 aa26.33■■□□□ 1.81
NUP54-205ENST00000507257 UNC13AQ9UPW8 1703 aa26.32■■□□□ 1.8
NUP54-205ENST00000507257 CLSPNQ9HAW4 1339 aa26.32■■□□□ 1.8
NUP54-205ENST00000507257 VPS8Q8N3P4 1428 aa26.3■■□□□ 1.8
NUP54-205ENST00000507257 PEG3Q9GZU2 1588 aa26.29■■□□□ 1.8
NUP54-205ENST00000507257 CLIP1P30622 1438 aa26.26■■□□□ 1.79
NUP54-205ENST00000507257 YTHDC1Q96MU7 727 aaKnown RBP26.22■■□□□ 1.79
NUP54-205ENST00000507257 SYNJ1O43426 1573 aa26.18■■□□□ 1.78
NUP54-205ENST00000507257 HNRNPUL2Q1KMD3 747 aaKnown RBP26.13■■□□□ 1.77
NUP54-205ENST00000507257 APLP2Q06481 763 aa26.03■■□□□ 1.76
NUP54-205ENST00000507257 RAPGEF2Q9Y4G8 1499 aa26■■□□□ 1.75
NUP54-205ENST00000507257 DHX57Q6P158 1386 aaKnown RBP25.97■■□□□ 1.75
NUP54-205ENST00000507257 ERICH3Q5RHP9 1530 aa25.95■■□□□ 1.75
NUP54-205ENST00000507257 BICRAQ9NZM4 1560 aa25.93■■□□□ 1.74
NUP54-205ENST00000507257 TOP2BQ02880 1626 aa25.91■■□□□ 1.74
NUP54-205ENST00000507257 CUX2O14529 1486 aa25.9■■□□□ 1.74
NUP54-205ENST00000507257 SUPT16HQ9Y5B9 1047 aaKnown RBP25.86■■□□□ 1.73
NUP54-205ENST00000507257 BIVM-ERCC5R4GMW8 1640 aa25.85■■□□□ 1.73
NUP54-205ENST00000507257 RRBP1Q9P2E9 1410 aaKnown RBP25.84■■□□□ 1.73
NUP54-205ENST00000507257 PRXQ9BXM0 1461 aa25.81■■□□□ 1.72
NUP54-205ENST00000507257 ATAD2BQ9ULI0 1458 aa25.81■■□□□ 1.72
NUP54-205ENST00000507257 ARAP1Q96P48 1450 aa25.8■■□□□ 1.72
NUP54-205ENST00000507257 TSHZ2Q9NRE2 1034 aa25.61■■□□□ 1.69
NUP54-205ENST00000507257 CCNB3Q8WWL7 1395 aa25.59■■□□□ 1.69
NUP54-205ENST00000507257 KANK4Q5T7N3 995 aaPredicted RBP25.57■■□□□ 1.68
NUP54-205ENST00000507257 MAP3K1Q13233 1512 aa25.54■■□□□ 1.68
NUP54-205ENST00000507257 ANP32EQ9BTT0 268 aa25.53■■□□□ 1.68
NUP54-205ENST00000507257 PABPN1Q86U42 306 aaKnown RBP eCLIP25.51■■□□□ 1.67
NUP54-205ENST00000507257 MAPKBP1O60336 1514 aa25.49■■□□□ 1.67
NUP54-205ENST00000507257 KIF27Q86VH2 1401 aa25.48■■□□□ 1.67
NUP54-205ENST00000507257 ARHGAP35Q9NRY4 1499 aa25.47■■□□□ 1.67
NUP54-205ENST00000507257 RANGAP1P46060 587 aaPredicted RBP25.42■■□□□ 1.66
NUP54-205ENST00000507257 CUX1P39880 1505 aa25.42■■□□□ 1.66
NUP54-205ENST00000507257 RAB3GAP2Q9H2M9 1393 aa25.39■■□□□ 1.66
NUP54-205ENST00000507257 HMGXB3Q12766 1538 aa25.37■■□□□ 1.65
NUP54-205ENST00000507257 TIAM1Q13009 1591 aa25.37■■□□□ 1.65
NUP54-205ENST00000507257 TIMELESSQ9UNS1 1208 aa25.36■■□□□ 1.65
NUP54-205ENST00000507257 SETD5Q9C0A6 1442 aa25.33■■□□□ 1.65
NUP54-205ENST00000507257 NCAPD3P42695 1498 aa25.26■■□□□ 1.63
NUP54-205ENST00000507257 WDR97A6NE52 1622 aa25.26■■□□□ 1.63
NUP54-205ENST00000507257 CCER2I3L3R5 266 aa25.25■■□□□ 1.63
NUP54-205ENST00000507257 KCNH8Q96L42 1107 aa25.24■■□□□ 1.63
NUP54-205ENST00000507257 LRRC9Q6ZRR7 1453 aa25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms