RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 PRG4Q92954 1404 aaPredicted RBP24.91■■□□□ 1.58
HMGCS1-203ENST00000507004 RUSC2Q8N2Y8 1516 aa24.88■■□□□ 1.57
HMGCS1-203ENST00000507004 KIAA0586Q9BVV6 1533 aa24.86■■□□□ 1.57
HMGCS1-203ENST00000507004 CARMIL1Q5VZK9 1371 aa24.82■■□□□ 1.56
HMGCS1-203ENST00000507004 NPM1P06748 294 aaKnown RBP eCLIP24.72■■□□□ 1.55
HMGCS1-203ENST00000507004 CARMIL2Q6F5E8 1435 aa24.67■■□□□ 1.54
HMGCS1-203ENST00000507004 RAPGEF2Q9Y4G8 1499 aa24.63■■□□□ 1.53
HMGCS1-203ENST00000507004 IQGAP2Q13576 1575 aa24.6■■□□□ 1.53
HMGCS1-203ENST00000507004 MAPKBP1O60336 1514 aa24.59■■□□□ 1.53
HMGCS1-203ENST00000507004 PTPRGP23470 1445 aa24.59■■□□□ 1.53
HMGCS1-203ENST00000507004 TNIKQ9UKE5 1360 aa24.58■■□□□ 1.53
HMGCS1-203ENST00000507004 ADCY10Q96PN6 1610 aa24.53■■□□□ 1.52
HMGCS1-203ENST00000507004 ABCC10Q5T3U5 1492 aa24.52■■□□□ 1.52
HMGCS1-203ENST00000507004 KIF13AQ9H1H9 1805 aa24.49■■□□□ 1.51
HMGCS1-203ENST00000507004 FAM69CQ0P6D2 419 aa24.48■■□□□ 1.51
HMGCS1-203ENST00000507004 UGGT2Q9NYU1 1516 aa24.48■■□□□ 1.51
HMGCS1-203ENST00000507004 UHRF1BP1LA0JNW5 1464 aa24.44■■□□□ 1.5
HMGCS1-203ENST00000507004 ABCC2Q92887 1545 aa24.43■■□□□ 1.5
HMGCS1-203ENST00000507004 DISP1Q96F81 1524 aa24.43■■□□□ 1.5
HMGCS1-203ENST00000507004 DIP2BQ9P265 1576 aa24.42■■□□□ 1.5
HMGCS1-203ENST00000507004 UACAQ9BZF9 1416 aa24.41■■□□□ 1.5
HMGCS1-203ENST00000507004 PRXQ9BXM0 1461 aa24.39■■□□□ 1.5
HMGCS1-203ENST00000507004 TTBK1Q5TCY1 1321 aaPredicted RBP24.38■■□□□ 1.49
HMGCS1-203ENST00000507004 GOLGA3Q08378 1498 aa24.38■■□□□ 1.49
HMGCS1-203ENST00000507004 PLB1Q6P1J6 1458 aa24.37■■□□□ 1.49
HMGCS1-203ENST00000507004 KIAA0556O60303 1618 aa24.35■■□□□ 1.49
HMGCS1-203ENST00000507004 CTTNBP2Q8WZ74 1663 aa24.35■■□□□ 1.49
HMGCS1-203ENST00000507004 EEA1Q15075 1411 aa24.31■■□□□ 1.48
HMGCS1-203ENST00000507004 FAM9AQ8IZU1 332 aaPredicted RBP24.31■■□□□ 1.48
HMGCS1-203ENST00000507004 KDM5BQ9UGL1 1544 aa24.3■■□□□ 1.48
HMGCS1-203ENST00000507004 ASXL2Q76L83 1435 aa24.29■■□□□ 1.48
HMGCS1-203ENST00000507004 CSRNP3Q8WYN3 585 aa24.28■■□□□ 1.48
HMGCS1-203ENST00000507004 GLI2P10070 1586 aa24.26■■□□□ 1.47
HMGCS1-203ENST00000507004 AEBP2Q6ZN18 517 aaPredicted RBP24.26■■□□□ 1.47
HMGCS1-203ENST00000507004 KDM6BO15054 1643 aa24.18■■□□□ 1.46
HMGCS1-203ENST00000507004 ZCCHC11Q5TAX3 1644 aaKnown RBP24.16■■□□□ 1.46
HMGCS1-203ENST00000507004 TSPOAP1O95153 1857 aa24.15■■□□□ 1.46
HMGCS1-203ENST00000507004 EPRSP07814 1512 aaKnown RBP24.15■■□□□ 1.46
HMGCS1-203ENST00000507004 ABCA8O94911 1581 aa24.13■■□□□ 1.45
HMGCS1-203ENST00000507004 WDR7Q9Y4E6 1490 aa24.12■■□□□ 1.45
HMGCS1-203ENST00000507004 TEX14Q8IWB6 1497 aa24.11■■□□□ 1.45
HMGCS1-203ENST00000507004 MAP3K4Q9Y6R4 1608 aa24.06■■□□□ 1.44
HMGCS1-203ENST00000507004 PPRC1Q5VV67 1664 aaKnown RBP24.03■■□□□ 1.44
HMGCS1-203ENST00000507004 SAMD9Q5K651 1589 aa24.03■■□□□ 1.44
HMGCS1-203ENST00000507004 P3H3Q8IVL6 736 aa23.98■■□□□ 1.43
HMGCS1-203ENST00000507004 KIF21BO75037 1637 aa23.98■■□□□ 1.43
HMGCS1-203ENST00000507004 MAGI3Q5TCQ9 1506 aa23.96■■□□□ 1.43
HMGCS1-203ENST00000507004 CFAP43Q8NDM7 1665 aa23.95■■□□□ 1.43
HMGCS1-203ENST00000507004 CD109Q6YHK3 1445 aa23.95■■□□□ 1.42
HMGCS1-203ENST00000507004 KCNH8Q96L42 1107 aa23.93■■□□□ 1.42
HMGCS1-203ENST00000507004 ATP10BO94823 1461 aa23.93■■□□□ 1.42
HMGCS1-203ENST00000507004 EFCAB5A4FU69 1503 aa23.91■■□□□ 1.42
HMGCS1-203ENST00000507004 RAPGEF6Q8TEU7 1601 aa23.91■■□□□ 1.42
HMGCS1-203ENST00000507004 CHIC1Q5VXU3 224 aa23.9■■□□□ 1.42
HMGCS1-203ENST00000507004 PHLDB1Q86UU1 1377 aa23.86■■□□□ 1.41
HMGCS1-203ENST00000507004 COL17A1Q9UMD9 1497 aaPredicted RBP23.86■■□□□ 1.41
HMGCS1-203ENST00000507004 FHOD3Q2V2M9 1422 aa23.84■■□□□ 1.41
HMGCS1-203ENST00000507004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.83■■□□□ 1.41
HMGCS1-203ENST00000507004 HNRNPUL2Q1KMD3 747 aaKnown RBP23.83■■□□□ 1.41
HMGCS1-203ENST00000507004 ARID3CA6NKF2 412 aa23.81■■□□□ 1.4
HMGCS1-203ENST00000507004 RANGAP1P46060 587 aaPredicted RBP23.81■■□□□ 1.4
HMGCS1-203ENST00000507004 KDM4FA0A1W2PPD8 638 aa23.8■■□□□ 1.4
HMGCS1-203ENST00000507004 UBTFP17480 764 aaKnown RBP23.8■■□□□ 1.4
HMGCS1-203ENST00000507004 NUP153P49790 1475 aaKnown RBP23.8■■□□□ 1.4
HMGCS1-203ENST00000507004 ABCA9Q8IUA7 1624 aa23.79■■□□□ 1.4
HMGCS1-203ENST00000507004 PLEKHD1A6NEE1 506 aa23.77■■□□□ 1.4
HMGCS1-203ENST00000507004 ARAP3Q8WWN8 1544 aa23.76■■□□□ 1.39
HMGCS1-203ENST00000507004 FMN1Q68DA7 1419 aa23.72■■□□□ 1.39
HMGCS1-203ENST00000507004 NEO1Q92859 1461 aa23.72■■□□□ 1.39
HMGCS1-203ENST00000507004 ADGRL1O94910 1474 aa23.69■■□□□ 1.38
HMGCS1-203ENST00000507004 CDK11AQ9UQ88 783 aaPredicted RBP23.63■■□□□ 1.37
HMGCS1-203ENST00000507004 ARHGAP35Q9NRY4 1499 aa23.62■■□□□ 1.37
HMGCS1-203ENST00000507004 HECW1Q76N89 1606 aa23.6■■□□□ 1.37
HMGCS1-203ENST00000507004 CFAP74Q9C0B2 1584 aa23.58■■□□□ 1.37
HMGCS1-203ENST00000507004 EHMT2Q96KQ7 1210 aa23.58■■□□□ 1.37
HMGCS1-203ENST00000507004 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.54■■□□□ 1.366e-16■■□□□ 12.6
HMGCS1-203ENST00000507004 ATP1B4Q9UN42 357 aaPredicted RBP23.54■■□□□ 1.36
HMGCS1-203ENST00000507004 FANCAO15360 1455 aa23.53■■□□□ 1.36
HMGCS1-203ENST00000507004 DENND4BO75064 1496 aaPredicted RBP23.53■■□□□ 1.36
HMGCS1-203ENST00000507004 CDK13Q14004 1512 aaKnown RBP23.53■■□□□ 1.36
HMGCS1-203ENST00000507004 AKNAQ7Z591 1439 aa23.52■■□□□ 1.36
HMGCS1-203ENST00000507004 RAPGEF3O95398 923 aa23.52■■□□□ 1.36
HMGCS1-203ENST00000507004 PLCH2O75038 1416 aa23.48■■□□□ 1.35
HMGCS1-203ENST00000507004 CLIP1P30622 1438 aa23.48■■□□□ 1.35
HMGCS1-203ENST00000507004 TTC37Q6PGP7 1564 aa23.47■■□□□ 1.35
HMGCS1-203ENST00000507004 TROQ12816 1431 aaPredicted RBP23.45■■□□□ 1.34
HMGCS1-203ENST00000507004 FRMPD1Q5SYB0 1578 aa23.44■■□□□ 1.34
HMGCS1-203ENST00000507004 CCDC18Q5T9S5 1454 aa23.43■■□□□ 1.34
HMGCS1-203ENST00000507004 EFCAB2Q5VUJ9 269 aa23.43■■□□□ 1.34
HMGCS1-203ENST00000507004 MAGI2Q86UL8 1455 aa23.43■■□□□ 1.34
HMGCS1-203ENST00000507004 CASKIN1Q8WXD9 1431 aa23.42■■□□□ 1.34
HMGCS1-203ENST00000507004 KIF14Q15058 1648 aa23.41■■□□□ 1.34
HMGCS1-203ENST00000507004 RICTORQ6R327 1708 aa23.41■■□□□ 1.34
HMGCS1-203ENST00000507004 ZMYM4Q5VZL5 1548 aa23.4■■□□□ 1.34
HMGCS1-203ENST00000507004 ARHGEF40Q8TER5 1519 aa23.39■■□□□ 1.34
HMGCS1-203ENST00000507004 MYO5CQ9NQX4 1742 aa23.38■■□□□ 1.33
HMGCS1-203ENST00000507004 ARID4BQ4LE39 1312 aaPredicted RBP23.37■■□□□ 1.33
HMGCS1-203ENST00000507004 SCAPERQ9BY12 1400 aa23.37■■□□□ 1.33
HMGCS1-203ENST00000507004 POGZQ7Z3K3 1410 aa23.35■■□□□ 1.33
HMGCS1-203ENST00000507004 FYCO1Q9BQS8 1478 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms