RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 CHGAP10645 457 aaKnown RBP19.72■□□□□ 0.75
TCOF1-207ENST00000504761 NCAPD3P42695 1498 aa19.72■□□□□ 0.75
TCOF1-207ENST00000504761 KDM2AQ9Y2K7 1162 aa19.68■□□□□ 0.74
TCOF1-207ENST00000504761 PLPPR3Q6T4P5 718 aa19.66■□□□□ 0.74
TCOF1-207ENST00000504761 FHAD1B1AJZ9 1412 aa19.66■□□□□ 0.74
TCOF1-207ENST00000504761 GTF3C3Q9Y5Q9 886 aa19.64■□□□□ 0.73
TCOF1-207ENST00000504761 CCNB3Q8WWL7 1395 aa19.64■□□□□ 0.73
TCOF1-207ENST00000504761 SIN3AQ96ST3 1273 aa19.63■□□□□ 0.73
TCOF1-207ENST00000504761 BCANQ96GW7 911 aa19.63■□□□□ 0.73
TCOF1-207ENST00000504761 ERICH6Q7L0X2 663 aa19.59■□□□□ 0.73
TCOF1-207ENST00000504761 DNAJC5BQ9UF47 199 aa19.59■□□□□ 0.73
TCOF1-207ENST00000504761 BICRAQ9NZM4 1560 aa19.59■□□□□ 0.73
TCOF1-207ENST00000504761 FHOD3Q2V2M9 1422 aa19.58■□□□□ 0.73
TCOF1-207ENST00000504761 RAD54L2Q9Y4B4 1467 aa19.57■□□□□ 0.72
TCOF1-207ENST00000504761 SENP3Q9H4L4 574 aaPredicted RBP19.57■□□□□ 0.72
TCOF1-207ENST00000504761 FGD5Q6ZNL6 1462 aa19.55■□□□□ 0.72
TCOF1-207ENST00000504761 ESF1Q9H501 851 aaKnown RBP19.54■□□□□ 0.72
TCOF1-207ENST00000504761 IGF1RP08069 1367 aa19.54■□□□□ 0.72
TCOF1-207ENST00000504761 RGL3Q3MIN7 710 aa19.53■□□□□ 0.72
TCOF1-207ENST00000504761 MIER1Q8N108 512 aa19.53■□□□□ 0.72
TCOF1-207ENST00000504761 NESP48681 1621 aa19.52■□□□□ 0.72
TCOF1-207ENST00000504761 STAG3Q9UJ98 1225 aa19.51■□□□□ 0.71
TCOF1-207ENST00000504761 ACIN1Q9UKV3 1341 aaKnown RBP19.48■□□□□ 0.71
TCOF1-207ENST00000504761 JPH4Q96JJ6 628 aa19.46■□□□□ 0.71
TCOF1-207ENST00000504761 CFTRP13569 1480 aa19.45■□□□□ 0.7
TCOF1-207ENST00000504761 CC2D2AQ9P2K1 1620 aa19.44■□□□□ 0.7
TCOF1-207ENST00000504761 FMN1Q68DA7 1419 aa19.43■□□□□ 0.7
TCOF1-207ENST00000504761 SYNJ1O43426 1573 aa19.42■□□□□ 0.7
TCOF1-207ENST00000504761 FAM9BQ8IZU0 186 aa19.41■□□□□ 0.7
TCOF1-207ENST00000504761 EIF4G2P78344 907 aaKnown RBP eCLIP19.4■□□□□ 0.7
TCOF1-207ENST00000504761 ARHGAP35Q9NRY4 1499 aa19.39■□□□□ 0.7
TCOF1-207ENST00000504761 CARMIL2Q6F5E8 1435 aa19.39■□□□□ 0.7
TCOF1-207ENST00000504761 FOXD1Q16676 465 aa19.39■□□□□ 0.7
TCOF1-207ENST00000504761 AQRO60306 1485 aaKnown RBP eCLIP19.38■□□□□ 0.695e-7■■■■■ 40.7
TCOF1-207ENST00000504761 GAPVD1Q14C86 1478 aa19.37■□□□□ 0.69
TCOF1-207ENST00000504761 HNRNPUQ00839 825 aaKnown RBP eCLIP19.36■□□□□ 0.69
TCOF1-207ENST00000504761 SALL2Q9Y467 1007 aaPredicted RBP19.36■□□□□ 0.69
TCOF1-207ENST00000504761 SETD5Q9C0A6 1442 aa19.33■□□□□ 0.68
TCOF1-207ENST00000504761 RAB3GAP2Q9H2M9 1393 aa19.32■□□□□ 0.68
TCOF1-207ENST00000504761 HMGXB3Q12766 1538 aa19.3■□□□□ 0.68
TCOF1-207ENST00000504761 SENP3-EIF4A1A0A087X0R7 540 aa19.27■□□□□ 0.68
TCOF1-207ENST00000504761 CLSPNQ9HAW4 1339 aa19.26■□□□□ 0.67
TCOF1-207ENST00000504761 CUX1P39880 1505 aa19.26■□□□□ 0.67
TCOF1-207ENST00000504761 MRS2Q9HD23 443 aa19.26■□□□□ 0.67
TCOF1-207ENST00000504761 UNC13AQ9UPW8 1703 aa19.25■□□□□ 0.67
TCOF1-207ENST00000504761 HNRNPMP52272 730 aaKnown RBP eCLIP19.24■□□□□ 0.67
TCOF1-207ENST00000504761 TMC1Q8TDI8 760 aa19.24■□□□□ 0.67
TCOF1-207ENST00000504761 CARD11Q9BXL7 1154 aa19.23■□□□□ 0.67
TCOF1-207ENST00000504761 PKD2Q13563 968 aa19.22■□□□□ 0.67
TCOF1-207ENST00000504761 ARID4BQ4LE39 1312 aaPredicted RBP19.2■□□□□ 0.66
TCOF1-207ENST00000504761 DCAF11Q8TEB1 546 aa19.19■□□□□ 0.66
TCOF1-207ENST00000504761 MPHOSPH9Q99550 1183 aa19.18■□□□□ 0.66
TCOF1-207ENST00000504761 KIF21BO75037 1637 aa19.18■□□□□ 0.66
TCOF1-207ENST00000504761 TOPBP1Q92547 1522 aa19.18■□□□□ 0.66
TCOF1-207ENST00000504761 FKBP8Q14318 412 aa19.18■□□□□ 0.66
TCOF1-207ENST00000504761 POLA1P09884 1462 aaPredicted RBP19.17■□□□□ 0.66
TCOF1-207ENST00000504761 SLC24A1O60721 1099 aa19.16■□□□□ 0.66
TCOF1-207ENST00000504761 GGT6Q6P531 493 aa19.15■□□□□ 0.66
TCOF1-207ENST00000504761 EFCAB2Q5VUJ9 269 aa19.15■□□□□ 0.66
TCOF1-207ENST00000504761 TOP2BQ02880 1626 aa19.15■□□□□ 0.66
TCOF1-207ENST00000504761 ARAP1Q96P48 1450 aa19.15■□□□□ 0.66
TCOF1-207ENST00000504761 MLECQ14165 292 aa19.14■□□□□ 0.66
TCOF1-207ENST00000504761 PTPRGP23470 1445 aa19.14■□□□□ 0.65
TCOF1-207ENST00000504761 PRXQ9BXM0 1461 aa19.12■□□□□ 0.65
TCOF1-207ENST00000504761 BCL11AQ9H165 835 aa19.12■□□□□ 0.65
TCOF1-207ENST00000504761 PPP1R15AO75807 674 aaPredicted RBP19.12■□□□□ 0.65
TCOF1-207ENST00000504761 NUP155O75694 1391 aa19.11■□□□□ 0.65
TCOF1-207ENST00000504761 DAXXQ9UER7 740 aaPredicted RBP19.11■□□□□ 0.65
TCOF1-207ENST00000504761 ZNF644Q9H582 1327 aaPredicted RBP19.1■□□□□ 0.65
TCOF1-207ENST00000504761 NEFMP07197 916 aa19.1■□□□□ 0.65
TCOF1-207ENST00000504761 CANXP27824 592 aaKnown RBP19.09■□□□□ 0.65
TCOF1-207ENST00000504761 CCDC18Q5T9S5 1454 aa19.09■□□□□ 0.65
TCOF1-207ENST00000504761 TRHP20396 242 aaPredicted RBP19.08■□□□□ 0.64
TCOF1-207ENST00000504761 PHLDB1Q86UU1 1377 aa19.07■□□□□ 0.64
TCOF1-207ENST00000504761 IRX6P78412 446 aaPredicted RBP19.06■□□□□ 0.64
TCOF1-207ENST00000504761 DHX57Q6P158 1386 aaKnown RBP19.05■□□□□ 0.64
TCOF1-207ENST00000504761 ANKRD30AQ9BXX3 1397 aa19.05■□□□□ 0.64
TCOF1-207ENST00000504761 GRIN2BQ13224 1484 aa19.05■□□□□ 0.64
TCOF1-207ENST00000504761 CYB5RLQ6IPT4 315 aa19.05■□□□□ 0.64
TCOF1-207ENST00000504761 TIMELESSQ9UNS1 1208 aa19.04■□□□□ 0.64
TCOF1-207ENST00000504761 SCAF1Q9H7N4 1312 aaKnown RBP19.04■□□□□ 0.64
TCOF1-207ENST00000504761 MRC2Q9UBG0 1479 aa19.04■□□□□ 0.64
TCOF1-207ENST00000504761 PEG3Q9GZU2 1588 aa19.04■□□□□ 0.64
TCOF1-207ENST00000504761 HSPA5P11021 654 aaKnown RBP19.03■□□□□ 0.64
TCOF1-207ENST00000504761 L3MBTL2Q969R5 705 aa19.03■□□□□ 0.64
TCOF1-207ENST00000504761 KIF3BO15066 747 aa19.02■□□□□ 0.64
TCOF1-207ENST00000504761 PLEKHG5O94827 1062 aa19.02■□□□□ 0.64
TCOF1-207ENST00000504761 OSCARQ8IYS5 282 aa19.02■□□□□ 0.63
TCOF1-207ENST00000504761 ERICH3Q5RHP9 1530 aa19.01■□□□□ 0.63
TCOF1-207ENST00000504761 WDR43Q15061 677 aaKnown RBP eCLIP19■□□□□ 0.637e-6■■■■■ 27.3
TCOF1-207ENST00000504761 SPAG9O60271 1321 aaKnown RBP18.97■□□□□ 0.63
TCOF1-207ENST00000504761 LRRC9Q6ZRR7 1453 aa18.96■□□□□ 0.63
TCOF1-207ENST00000504761 DNMBPQ6XZF7 1577 aa18.95■□□□□ 0.62
TCOF1-207ENST00000504761 KANK1Q14678 1352 aa18.95■□□□□ 0.62
TCOF1-207ENST00000504761 KNSTRNQ9Y448 316 aa18.94■□□□□ 0.62
TCOF1-207ENST00000504761 SAFB2Q14151 953 aaKnown RBP eCLIP18.94■□□□□ 0.62
TCOF1-207ENST00000504761 CC2D1BQ5T0F9 858 aaKnown RBP18.92■□□□□ 0.62
TCOF1-207ENST00000504761 FGD6Q6ZV73 1430 aa18.92■□□□□ 0.62
TCOF1-207ENST00000504761 CASKIN1Q8WXD9 1431 aa18.92■□□□□ 0.62
TCOF1-207ENST00000504761 IFT140Q96RY7 1462 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms