RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 CUL7Q14999 1698 aa30.87■■■□□ 2.53
SQSTM1-209ENST00000504627 RUSC2Q8N2Y8 1516 aa30.84■■■□□ 2.53
SQSTM1-209ENST00000504627 CARMIL1Q5VZK9 1371 aa30.81■■■□□ 2.52
SQSTM1-209ENST00000504627 KIAA0586Q9BVV6 1533 aa30.78■■■□□ 2.52
SQSTM1-209ENST00000504627 NPM1P06748 294 aaKnown RBP eCLIP30.6■■■□□ 2.49
SQSTM1-209ENST00000504627 RAPGEF2Q9Y4G8 1499 aa30.55■■■□□ 2.48
SQSTM1-209ENST00000504627 CARMIL2Q6F5E8 1435 aa30.52■■■□□ 2.48
SQSTM1-209ENST00000504627 TTBK1Q5TCY1 1321 aaPredicted RBP30.51■■■□□ 2.48
SQSTM1-209ENST00000504627 IQGAP2Q13576 1575 aa30.51■■■□□ 2.47
SQSTM1-209ENST00000504627 PTPRGP23470 1445 aa30.48■■■□□ 2.47
SQSTM1-209ENST00000504627 ADCY10Q96PN6 1610 aa30.44■■■□□ 2.46
SQSTM1-209ENST00000504627 TNIKQ9UKE5 1360 aa30.44■■■□□ 2.46
SQSTM1-209ENST00000504627 FAM69CQ0P6D2 419 aa30.38■■■□□ 2.45
SQSTM1-209ENST00000504627 MAPKBP1O60336 1514 aa30.37■■■□□ 2.45
SQSTM1-209ENST00000504627 KIF13AQ9H1H9 1805 aa30.34■■■□□ 2.45
SQSTM1-209ENST00000504627 ABCC10Q5T3U5 1492 aa30.33■■■□□ 2.45
SQSTM1-209ENST00000504627 DISP1Q96F81 1524 aa30.32■■■□□ 2.44
SQSTM1-209ENST00000504627 UGGT2Q9NYU1 1516 aa30.31■■■□□ 2.44
SQSTM1-209ENST00000504627 PRXQ9BXM0 1461 aa30.26■■■□□ 2.44
SQSTM1-209ENST00000504627 UACAQ9BZF9 1416 aa30.23■■■□□ 2.43
SQSTM1-209ENST00000504627 ABCC2Q92887 1545 aa30.23■■■□□ 2.43
SQSTM1-209ENST00000504627 DIP2BQ9P265 1576 aa30.23■■■□□ 2.43
SQSTM1-209ENST00000504627 CTTNBP2Q8WZ74 1663 aa30.22■■■□□ 2.43
SQSTM1-209ENST00000504627 KIAA0556O60303 1618 aa30.22■■■□□ 2.43
SQSTM1-209ENST00000504627 UHRF1BP1LA0JNW5 1464 aa30.19■■■□□ 2.42
SQSTM1-209ENST00000504627 CSRNP3Q8WYN3 585 aa30.19■■■□□ 2.42
SQSTM1-209ENST00000504627 GOLGA3Q08378 1498 aa30.15■■■□□ 2.42
SQSTM1-209ENST00000504627 ASXL2Q76L83 1435 aa30.13■■■□□ 2.41
SQSTM1-209ENST00000504627 PLB1Q6P1J6 1458 aa30.11■■■□□ 2.41
SQSTM1-209ENST00000504627 EEA1Q15075 1411 aa30.07■■■□□ 2.4
SQSTM1-209ENST00000504627 KDM5BQ9UGL1 1544 aa30.06■■■□□ 2.4
SQSTM1-209ENST00000504627 FAM9AQ8IZU1 332 aaPredicted RBP30.04■■■□□ 2.4
SQSTM1-209ENST00000504627 TSPOAP1O95153 1857 aa30.04■■■□□ 2.4
SQSTM1-209ENST00000504627 AEBP2Q6ZN18 517 aaPredicted RBP30.03■■■□□ 2.4
SQSTM1-209ENST00000504627 ZCCHC11Q5TAX3 1644 aaKnown RBP29.98■■■□□ 2.39
SQSTM1-209ENST00000504627 P3H3Q8IVL6 736 aa29.98■■■□□ 2.39
SQSTM1-209ENST00000504627 GLI2P10070 1586 aa29.95■■■□□ 2.39
SQSTM1-209ENST00000504627 KDM6BO15054 1643 aa29.93■■■□□ 2.38
SQSTM1-209ENST00000504627 EPRSP07814 1512 aaKnown RBP29.92■■■□□ 2.38
SQSTM1-209ENST00000504627 ABCA8O94911 1581 aa29.9■■■□□ 2.38
SQSTM1-209ENST00000504627 RANGAP1P46060 587 aaPredicted RBP29.88■■■□□ 2.37
SQSTM1-209ENST00000504627 WDR7Q9Y4E6 1490 aa29.87■■■□□ 2.37
SQSTM1-209ENST00000504627 CHIC1Q5VXU3 224 aa29.86■■■□□ 2.37
SQSTM1-209ENST00000504627 KCNH8Q96L42 1107 aa29.82■■■□□ 2.36
SQSTM1-209ENST00000504627 ARID3CA6NKF2 412 aa29.81■■■□□ 2.36
SQSTM1-209ENST00000504627 SAMD9Q5K651 1589 aa29.8■■■□□ 2.36
SQSTM1-209ENST00000504627 PPRC1Q5VV67 1664 aaKnown RBP29.79■■■□□ 2.36
SQSTM1-209ENST00000504627 MAP3K4Q9Y6R4 1608 aa29.78■■■□□ 2.36
SQSTM1-209ENST00000504627 TEX14Q8IWB6 1497 aa29.77■■■□□ 2.36
SQSTM1-209ENST00000504627 KIF21BO75037 1637 aa29.76■■■□□ 2.35
SQSTM1-209ENST00000504627 EHMT2Q96KQ7 1210 aa29.73■■■□□ 2.35
SQSTM1-209ENST00000504627 ATP10BO94823 1461 aa29.7■■■□□ 2.35
SQSTM1-209ENST00000504627 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.7■■■□□ 2.35
SQSTM1-209ENST00000504627 HNRNPUL2Q1KMD3 747 aaKnown RBP29.7■■■□□ 2.35
SQSTM1-209ENST00000504627 FHOD3Q2V2M9 1422 aa29.69■■■□□ 2.34
SQSTM1-209ENST00000504627 CD109Q6YHK3 1445 aa29.69■■■□□ 2.34
SQSTM1-209ENST00000504627 UBTFP17480 764 aaKnown RBP29.68■■■□□ 2.34
SQSTM1-209ENST00000504627 RAPGEF6Q8TEU7 1601 aa29.67■■■□□ 2.34
SQSTM1-209ENST00000504627 CFAP43Q8NDM7 1665 aa29.63■■■□□ 2.33
SQSTM1-209ENST00000504627 COL17A1Q9UMD9 1497 aaPredicted RBP29.62■■■□□ 2.33
SQSTM1-209ENST00000504627 MAGI3Q5TCQ9 1506 aa29.61■■■□□ 2.33
SQSTM1-209ENST00000504627 EFCAB5A4FU69 1503 aa29.6■■■□□ 2.33
SQSTM1-209ENST00000504627 NUP153P49790 1475 aaKnown RBP29.55■■■□□ 2.32
SQSTM1-209ENST00000504627 KDM4FA0A1W2PPD8 638 aa29.53■■■□□ 2.32
SQSTM1-209ENST00000504627 PLEKHD1A6NEE1 506 aa29.49■■■□□ 2.31
SQSTM1-209ENST00000504627 ABCA9Q8IUA7 1624 aa29.45■■■□□ 2.3
SQSTM1-209ENST00000504627 ATP1B4Q9UN42 357 aaPredicted RBP29.42■■■□□ 2.3
SQSTM1-209ENST00000504627 FMN1Q68DA7 1419 aa29.39■■■□□ 2.3
SQSTM1-209ENST00000504627 ARHGAP35Q9NRY4 1499 aa29.38■■■□□ 2.29
SQSTM1-209ENST00000504627 PHLDB1Q86UU1 1377 aa29.38■■■□□ 2.29
SQSTM1-209ENST00000504627 ARAP3Q8WWN8 1544 aa29.36■■■□□ 2.29
SQSTM1-209ENST00000504627 ADGRL1O94910 1474 aa29.36■■■□□ 2.29
SQSTM1-209ENST00000504627 CDK13Q14004 1512 aaKnown RBP29.31■■■□□ 2.28
SQSTM1-209ENST00000504627 NEO1Q92859 1461 aa29.31■■■□□ 2.28
SQSTM1-209ENST00000504627 HECW1Q76N89 1606 aa29.27■■■□□ 2.28
SQSTM1-209ENST00000504627 RAPGEF3O95398 923 aa29.27■■■□□ 2.28
SQSTM1-209ENST00000504627 CDK11AQ9UQ88 783 aaPredicted RBP29.25■■■□□ 2.27
SQSTM1-209ENST00000504627 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.24■■■□□ 2.276e-7■■■■□ 21.5
SQSTM1-209ENST00000504627 FANCAO15360 1455 aa29.18■■■□□ 2.26
SQSTM1-209ENST00000504627 TTC37Q6PGP7 1564 aa29.18■■■□□ 2.26
SQSTM1-209ENST00000504627 AKNAQ7Z591 1439 aa29.17■■■□□ 2.26
SQSTM1-209ENST00000504627 DENND4BO75064 1496 aaPredicted RBP29.14■■■□□ 2.26
SQSTM1-209ENST00000504627 CFAP74Q9C0B2 1584 aa29.13■■■□□ 2.25
SQSTM1-209ENST00000504627 PLCH2O75038 1416 aa29.09■■■□□ 2.25
SQSTM1-209ENST00000504627 FRMPD1Q5SYB0 1578 aa29.09■■■□□ 2.25
SQSTM1-209ENST00000504627 CLIP1P30622 1438 aa29.08■■■□□ 2.25
SQSTM1-209ENST00000504627 TROQ12816 1431 aaPredicted RBP29.07■■■□□ 2.24
SQSTM1-209ENST00000504627 CASKIN1Q8WXD9 1431 aa29.06■■■□□ 2.24
SQSTM1-209ENST00000504627 ARID4BQ4LE39 1312 aaPredicted RBP29.05■■■□□ 2.24
SQSTM1-209ENST00000504627 EFCAB2Q5VUJ9 269 aa29.04■■■□□ 2.24
SQSTM1-209ENST00000504627 KIF14Q15058 1648 aa29.04■■■□□ 2.24
SQSTM1-209ENST00000504627 PCF11O94913 1555 aaKnown RBP29.03■■■□□ 2.24
SQSTM1-209ENST00000504627 CCDC18Q5T9S5 1454 aa29.02■■■□□ 2.24
SQSTM1-209ENST00000504627 RICTORQ6R327 1708 aa29.01■■■□□ 2.23
SQSTM1-209ENST00000504627 SCAPERQ9BY12 1400 aa29.01■■■□□ 2.23
SQSTM1-209ENST00000504627 LRRIQ1Q96JM4 1722 aa29■■■□□ 2.23
SQSTM1-209ENST00000504627 MYO5CQ9NQX4 1742 aa28.99■■■□□ 2.23
SQSTM1-209ENST00000504627 FYCO1Q9BQS8 1478 aa28.96■■■□□ 2.23
SQSTM1-209ENST00000504627 ARHGEF40Q8TER5 1519 aa28.95■■■□□ 2.23
SQSTM1-209ENST00000504627 ARHGAP5Q13017 1502 aa28.94■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms