RNA–Protein interactions for RNA: ENST00000498719.1

FN1-227, Transcript of fibronectin 1, humanhuman

TSL 2

Gene FN1, Length 2,433 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-227ENST00000498719 SYNJ1O43426 1573 aa13.46□□□□□ -0.25
FN1-227ENST00000498719 ATAD2BQ9ULI0 1458 aa13.46□□□□□ -0.26
FN1-227ENST00000498719 EEA1Q15075 1411 aa13.45□□□□□ -0.26
FN1-227ENST00000498719 TRHP20396 242 aaPredicted RBP13.43□□□□□ -0.26
FN1-227ENST00000498719 BAZ1BQ9UIG0 1483 aaKnown RBP13.43□□□□□ -0.26
FN1-227ENST00000498719 GOLGA3Q08378 1498 aa13.42□□□□□ -0.26
FN1-227ENST00000498719 DNAJC5Q9H3Z4 198 aa13.39□□□□□ -0.27
FN1-227ENST00000498719 IFNLR1Q8IU57 520 aaPredicted RBP13.38□□□□□ -0.27
FN1-227ENST00000498719 IGSF3O75054 1194 aa13.34□□□□□ -0.27
FN1-227ENST00000498719 CNKSR2Q8WXI2 1034 aa13.34□□□□□ -0.27
FN1-227ENST00000498719 SPRYD3Q8NCJ5 442 aa13.34□□□□□ -0.27
FN1-227ENST00000498719 CEP164Q9UPV0 1460 aa13.33□□□□□ -0.27
FN1-227ENST00000498719 KIF21BO75037 1637 aa13.32□□□□□ -0.28
FN1-227ENST00000498719 RAPGEF2Q9Y4G8 1499 aa13.3□□□□□ -0.28
FN1-227ENST00000498719 CLIP1P30622 1438 aa13.29□□□□□ -0.28
FN1-227ENST00000498719 BRPF1P55201 1214 aaPredicted RBP13.28□□□□□ -0.28
FN1-227ENST00000498719 ATXN8OSP0DMR3 200 aa13.27□□□□□ -0.29
FN1-227ENST00000498719 FOXD1Q16676 465 aa13.27□□□□□ -0.29
FN1-227ENST00000498719 ARID3AQ99856 593 aa13.27□□□□□ -0.29
FN1-227ENST00000498719 CCDC9Q9Y3X0 531 aaKnown RBP13.25□□□□□ -0.29
FN1-227ENST00000498719 TOP2BQ02880 1626 aa13.25□□□□□ -0.29
FN1-227ENST00000498719 DNAJC5BQ9UF47 199 aa13.25□□□□□ -0.29
FN1-227ENST00000498719 VASPP50552 380 aaPredicted RBP13.24□□□□□ -0.29
FN1-227ENST00000498719 SCAF1Q9H7N4 1312 aaKnown RBP13.24□□□□□ -0.29
FN1-227ENST00000498719 HNRNPUL2Q1KMD3 747 aaKnown RBP13.23□□□□□ -0.29
FN1-227ENST00000498719 VPS8Q8N3P4 1428 aa13.21□□□□□ -0.29
FN1-227ENST00000498719 NECTIN2Q92692 538 aa13.21□□□□□ -0.3
FN1-227ENST00000498719 DIEXFQ68CQ4 756 aaKnown RBP13.2□□□□□ -0.3
FN1-227ENST00000498719 BIVM-ERCC5R4GMW8 1640 aa13.2□□□□□ -0.3
FN1-227ENST00000498719 CHMP4AQ9BY43 222 aa13.19□□□□□ -0.3
FN1-227ENST00000498719 SLC4A2P04920 1241 aa13.17□□□□□ -0.3
FN1-227ENST00000498719 NCAPD3P42695 1498 aa13.16□□□□□ -0.3
FN1-227ENST00000498719 C1orf115Q9H7X2 142 aa13.15□□□□□ -0.3
FN1-227ENST00000498719 HMGXB3Q12766 1538 aa13.15□□□□□ -0.3
FN1-227ENST00000498719 CUX1P39880 1505 aa13.15□□□□□ -0.3
FN1-227ENST00000498719 PRXQ9BXM0 1461 aa13.12□□□□□ -0.31
FN1-227ENST00000498719 SAMD1Q6SPF0 538 aaPredicted RBP13.11□□□□□ -0.31
FN1-227ENST00000498719 NEUROD1Q13562 356 aa13.11□□□□□ -0.31
FN1-227ENST00000498719 CDK11BP21127 795 aaKnown RBP13.1□□□□□ -0.31
FN1-227ENST00000498719 CDK11AQ9UQ88 783 aaPredicted RBP13.1□□□□□ -0.31
FN1-227ENST00000498719 ERICH3Q5RHP9 1530 aa13.09□□□□□ -0.31
FN1-227ENST00000498719 ARAP1Q96P48 1450 aa13.08□□□□□ -0.31
FN1-227ENST00000498719 ZNF316A6NFI3 1004 aaPredicted RBP13.08□□□□□ -0.32
FN1-227ENST00000498719 CFTRP13569 1480 aa13.08□□□□□ -0.32
FN1-227ENST00000498719 ACIN1Q9UKV3 1341 aaKnown RBP13.07□□□□□ -0.32
FN1-227ENST00000498719 ZBTB7CA1YPR0 619 aa13.07□□□□□ -0.32
FN1-227ENST00000498719 KANK4Q5T7N3 995 aaPredicted RBP13.06□□□□□ -0.32
FN1-227ENST00000498719 KIF27Q86VH2 1401 aa13.05□□□□□ -0.32
FN1-227ENST00000498719 ZMYND15Q9H091 742 aa13.05□□□□□ -0.32
FN1-227ENST00000498719 RGL2O15211 777 aa13.04□□□□□ -0.32
FN1-227ENST00000498719 ECM2O94769 699 aaPredicted RBP13.04□□□□□ -0.32
FN1-227ENST00000498719 RSPH6AQ9H0K4 717 aa13□□□□□ -0.33
FN1-227ENST00000498719 PDIA4P13667 645 aaKnown RBP12.99□□□□□ -0.33
FN1-227ENST00000498719 PRDM2Q13029 1718 aa12.98□□□□□ -0.33
FN1-227ENST00000498719 ARHGAP35Q9NRY4 1499 aa12.97□□□□□ -0.33
FN1-227ENST00000498719 CUX2O14529 1486 aa12.96□□□□□ -0.33
FN1-227ENST00000498719 CENPBP07199 599 aaPredicted RBP12.96□□□□□ -0.33
FN1-227ENST00000498719 NEUROD2Q15784 382 aa12.96□□□□□ -0.34
FN1-227ENST00000498719 YTHDC1Q96MU7 727 aaKnown RBP12.96□□□□□ -0.34
FN1-227ENST00000498719 MYCNP04198 464 aaPredicted RBP12.95□□□□□ -0.34
FN1-227ENST00000498719 MIER1Q8N108 512 aa12.95□□□□□ -0.34
FN1-227ENST00000498719 HSP90B1P14625 803 aaKnown RBP12.94□□□□□ -0.34
FN1-227ENST00000498719 ATF5Q9Y2D1 282 aaPredicted RBP12.94□□□□□ -0.34
FN1-227ENST00000498719 IGF1RP08069 1367 aa12.93□□□□□ -0.34
FN1-227ENST00000498719 CADPSQ9ULU8 1353 aa12.93□□□□□ -0.34
FN1-227ENST00000498719 ARID3CA6NKF2 412 aa12.93□□□□□ -0.34
FN1-227ENST00000498719 DHX57Q6P158 1386 aaKnown RBP12.92□□□□□ -0.34
FN1-227ENST00000498719 MAPK8IP2Q13387 824 aaPredicted RBP12.92□□□□□ -0.34
FN1-227ENST00000498719 DHX37Q8IY37 1157 aaKnown RBP12.91□□□□□ -0.34
FN1-227ENST00000498719 FGD5Q6ZNL6 1462 aa12.91□□□□□ -0.34
FN1-227ENST00000498719 ITGAEP38570 1179 aa12.9□□□□□ -0.34
FN1-227ENST00000498719 RRBP1Q9P2E9 1410 aaKnown RBP12.9□□□□□ -0.34
FN1-227ENST00000498719 ZNF428Q96B54 188 aa12.9□□□□□ -0.34
FN1-227ENST00000498719 CHGAP10645 457 aaKnown RBP12.89□□□□□ -0.35
FN1-227ENST00000498719 CC2D2AQ9P2K1 1620 aa12.89□□□□□ -0.35
FN1-227ENST00000498719 CARMIL1Q5VZK9 1371 aa12.88□□□□□ -0.35
FN1-227ENST00000498719 CCNB3Q8WWL7 1395 aa12.87□□□□□ -0.35
FN1-227ENST00000498719 PIAS4Q8N2W9 510 aaPredicted RBP12.86□□□□□ -0.35
FN1-227ENST00000498719 HMGB1P09429 215 aaKnown RBP12.86□□□□□ -0.35
FN1-227ENST00000498719 LMOD2Q6P5Q4 547 aa12.84□□□□□ -0.35
FN1-227ENST00000498719 P3H3Q8IVL6 736 aa12.84□□□□□ -0.35
FN1-227ENST00000498719 PUS7Q96PZ0 661 aaKnown RBP12.84□□□□□ -0.35
FN1-227ENST00000498719 CLSPNQ9HAW4 1339 aa12.83□□□□□ -0.36
FN1-227ENST00000498719 KCTD17Q8N5Z5 321 aa12.83□□□□□ -0.36
FN1-227ENST00000498719 FANCD2Q9BXW9 1451 aa12.83□□□□□ -0.36
FN1-227ENST00000498719 TIAM1Q13009 1591 aa12.82□□□□□ -0.36
FN1-227ENST00000498719 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.81□□□□□ -0.36
FN1-227ENST00000498719 RAD54L2Q9Y4B4 1467 aa12.81□□□□□ -0.36
FN1-227ENST00000498719 RAD21O60216 631 aa12.81□□□□□ -0.36
FN1-227ENST00000498719 RGS22Q8NE09 1264 aa12.8□□□□□ -0.36
FN1-227ENST00000498719 NESP48681 1621 aa12.8□□□□□ -0.36
FN1-227ENST00000498719 ATP1B4Q9UN42 357 aaPredicted RBP12.79□□□□□ -0.36
FN1-227ENST00000498719 UBE2Q2Q8WVN8 375 aa12.78□□□□□ -0.36
FN1-227ENST00000498719 PROM2Q8N271 834 aa12.77□□□□□ -0.37
FN1-227ENST00000498719 LRRC9Q6ZRR7 1453 aa12.77□□□□□ -0.37
FN1-227ENST00000498719 PHLDB1Q86UU1 1377 aa12.77□□□□□ -0.37
FN1-227ENST00000498719 RAB3GAP2Q9H2M9 1393 aa12.77□□□□□ -0.37
FN1-227ENST00000498719 MTMR7Q9Y216 660 aa12.77□□□□□ -0.37
FN1-227ENST00000498719 APBB1O00213 710 aa12.76□□□□□ -0.37
FN1-227ENST00000498719 PCF11O94913 1555 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms