RNA–Protein interactions for RNA: ENST00000498719.1

FN1-227, Transcript of fibronectin 1, humanhuman

TSL 2

Gene FN1, Length 2,433 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-227ENST00000498719 CHIC1Q5VXU3 224 aa18.62■□□□□ 0.57
FN1-227ENST00000498719 SLC24A1O60721 1099 aa18.15■□□□□ 0.5
FN1-227ENST00000498719 NISCHQ9Y2I1 1504 aa18.13■□□□□ 0.49
FN1-227ENST00000498719 AEBP2Q6ZN18 517 aaPredicted RBP17.61■□□□□ 0.41
FN1-227ENST00000498719 EHMT2Q96KQ7 1210 aa17.47■□□□□ 0.39
FN1-227ENST00000498719 PLPPR3Q6T4P5 718 aa16.91■□□□□ 0.3
FN1-227ENST00000498719 PHF23Q9BUL5 403 aaPredicted RBP16.87■□□□□ 0.29
FN1-227ENST00000498719 RTN4Q9NQC3 1192 aaKnown RBP16.69■□□□□ 0.26
FN1-227ENST00000498719 CSRNP3Q8WYN3 585 aa16.36■□□□□ 0.21
FN1-227ENST00000498719 KCNA4P22459 653 aa16.31■□□□□ 0.2
FN1-227ENST00000498719 AMER1Q5JTC6 1135 aaPredicted RBP16.22■□□□□ 0.19
FN1-227ENST00000498719 NCBP3Q53F19 620 aaKnown RBP16.2■□□□□ 0.18
FN1-227ENST00000498719 DAXXQ9UER7 740 aaPredicted RBP16.13■□□□□ 0.17
FN1-227ENST00000498719 PRKCSHP14314 528 aaPredicted RBP15.88■□□□□ 0.13
FN1-227ENST00000498719 SHROOM4Q9ULL8 1493 aa15.58■□□□□ 0.08
FN1-227ENST00000498719 SLC4A1APQ9BWU0 796 aaKnown RBP15.56■□□□□ 0.08
FN1-227ENST00000498719 TIMELESSQ9UNS1 1208 aa15.43■□□□□ 0.06
FN1-227ENST00000498719 CCDC180Q9P1Z9 1646 aa15.37■□□□□ 0.05
FN1-227ENST00000498719 ARXQ96QS3 562 aa15.35■□□□□ 0.05
FN1-227ENST00000498719 TAOK2Q9UL54 1235 aa15.34■□□□□ 0.05
FN1-227ENST00000498719 ZCCHC6Q5VYS8 1495 aaKnown RBP15.33■□□□□ 0.04
FN1-227ENST00000498719 SUPT5HO00267 1087 aaKnown RBP15.26■□□□□ 0.03
FN1-227ENST00000498719 ADRA2BP18089 450 aa15.22■□□□□ 0.03
FN1-227ENST00000498719 TULP1O00294 542 aaPredicted RBP15.18■□□□□ 0.02
FN1-227ENST00000498719 DCAF8L2P0C7V8 631 aa15.14■□□□□ 0.01
FN1-227ENST00000498719 ZBTB22O15209 634 aa15.11■□□□□ 0.01
FN1-227ENST00000498719 BCANQ96GW7 911 aa15.11■□□□□ 0.01
FN1-227ENST00000498719 TPRNQ4KMQ1 711 aa15.08■□□□□ 0.01
FN1-227ENST00000498719 PLCB2Q00722 1185 aa15□□□□□ -0.01
FN1-227ENST00000498719 APLP2Q06481 763 aa14.93□□□□□ -0.02
FN1-227ENST00000498719 HOMEZQ8IX15 550 aa14.89□□□□□ -0.03
FN1-227ENST00000498719 HAP1P54257 671 aaPredicted RBP14.83□□□□□ -0.04
FN1-227ENST00000498719 DCAF1Q9Y4B6 1507 aa14.81□□□□□ -0.04
FN1-227ENST00000498719 MYO15BQ96JP2 1530 aa14.79□□□□□ -0.04
FN1-227ENST00000498719 GTF3C3Q9Y5Q9 886 aa14.74□□□□□ -0.05
FN1-227ENST00000498719 RANGAP1P46060 587 aaPredicted RBP14.72□□□□□ -0.05
FN1-227ENST00000498719 KLHL34Q8N239 644 aa14.63□□□□□ -0.07
FN1-227ENST00000498719 PELP1Q8IZL8 1130 aaKnown RBP14.61□□□□□ -0.07
FN1-227ENST00000498719 PODXL2Q9NZ53 605 aa14.61□□□□□ -0.07
FN1-227ENST00000498719 TTBK1Q5TCY1 1321 aaPredicted RBP14.6□□□□□ -0.07
FN1-227ENST00000498719 FKBP8Q14318 412 aa14.6□□□□□ -0.07
FN1-227ENST00000498719 NPM3O75607 178 aaKnown RBP14.57□□□□□ -0.08
FN1-227ENST00000498719 ERICH6Q7L0X2 663 aa14.52□□□□□ -0.09
FN1-227ENST00000498719 SCRIBQ14160 1630 aa14.5□□□□□ -0.09
FN1-227ENST00000498719 ABCC9O60706 1549 aa14.47□□□□□ -0.09
FN1-227ENST00000498719 VSIG10Q8N0Z9 540 aa14.46□□□□□ -0.09
FN1-227ENST00000498719 KDM2AQ9Y2K7 1162 aa14.44□□□□□ -0.1
FN1-227ENST00000498719 LOC105371045A0A1W2PR82 267 aa14.42□□□□□ -0.1
FN1-227ENST00000498719 TMEM132AQ24JP5 1023 aa14.42□□□□□ -0.1
FN1-227ENST00000498719 PCGF6Q9BYE7 350 aa14.38□□□□□ -0.11
FN1-227ENST00000498719 PPP6R1Q9UPN7 881 aa14.38□□□□□ -0.11
FN1-227ENST00000498719 RSF1Q96T23 1441 aaPredicted RBP14.37□□□□□ -0.11
FN1-227ENST00000498719 HRCP23327 699 aa14.33□□□□□ -0.12
FN1-227ENST00000498719 FBLN2P98095 1184 aa14.32□□□□□ -0.12
FN1-227ENST00000498719 MYT1Q01538 1121 aa14.3□□□□□ -0.12
FN1-227ENST00000498719 PPP4R3CPQ6ZMV5 832 aa14.29□□□□□ -0.12
FN1-227ENST00000498719 C14orf37Q86TY3 774 aa14.26□□□□□ -0.13
FN1-227ENST00000498719 RB1CC1Q8TDY2 1594 aa14.26□□□□□ -0.13
FN1-227ENST00000498719 NPM2Q86SE8 214 aaKnown RBP14.23□□□□□ -0.13
FN1-227ENST00000498719 NACADO15069 1562 aa14.21□□□□□ -0.14
FN1-227ENST00000498719 CECR2Q9BXF3 1484 aa14.2□□□□□ -0.14
FN1-227ENST00000498719 SENP3Q9H4L4 574 aaPredicted RBP14.19□□□□□ -0.14
FN1-227ENST00000498719 TRIM41Q8WV44 630 aa14.16□□□□□ -0.14
FN1-227ENST00000498719 MROH2BQ7Z745 1585 aa14.14□□□□□ -0.15
FN1-227ENST00000498719 PPARGC1BQ86YN6 1023 aaKnown RBP14.13□□□□□ -0.15
FN1-227ENST00000498719 FOXD4L1Q9NU39 408 aa14.13□□□□□ -0.15
FN1-227ENST00000498719 FAM9AQ8IZU1 332 aaPredicted RBP14.12□□□□□ -0.15
FN1-227ENST00000498719 TRIM26Q12899 539 aaPredicted RBP14.1□□□□□ -0.15
FN1-227ENST00000498719 WIZO95785 1651 aa14.08□□□□□ -0.15
FN1-227ENST00000498719 EIF5BO60841 1220 aaKnown RBP13.99□□□□□ -0.17
FN1-227ENST00000498719 UBTFP17480 764 aaKnown RBP13.98□□□□□ -0.17
FN1-227ENST00000498719 FBXO3Q9UK99 471 aa13.95□□□□□ -0.18
FN1-227ENST00000498719 BAZ1AQ9NRL2 1556 aaPredicted RBP13.93□□□□□ -0.18
FN1-227ENST00000498719 UNC13AQ9UPW8 1703 aa13.89□□□□□ -0.19
FN1-227ENST00000498719 EIF4G1Q04637 1599 aaKnown RBP13.85□□□□□ -0.19
FN1-227ENST00000498719 SMARCA4P51532 1647 aa13.82□□□□□ -0.2
FN1-227ENST00000498719 TOP2AP11388 1531 aaKnown RBP13.79□□□□□ -0.2
FN1-227ENST00000498719 ABCC8Q09428 1581 aa13.79□□□□□ -0.2
FN1-227ENST00000498719 CCDC88BA6NC98 1476 aa13.77□□□□□ -0.2
FN1-227ENST00000498719 PAXIP1Q6ZW49 1069 aaPredicted RBP13.76□□□□□ -0.21
FN1-227ENST00000498719 SMARCA2P51531 1590 aa13.75□□□□□ -0.21
FN1-227ENST00000498719 PABPN1Q86U42 306 aaKnown RBP eCLIP13.74□□□□□ -0.21
FN1-227ENST00000498719 TSHZ2Q9NRE2 1034 aa13.73□□□□□ -0.21
FN1-227ENST00000498719 CFAP44Q96MT7 982 aa13.73□□□□□ -0.21
FN1-227ENST00000498719 NBR1Q14596 966 aa13.68□□□□□ -0.22
FN1-227ENST00000498719 BICRAQ9NZM4 1560 aa13.67□□□□□ -0.22
FN1-227ENST00000498719 ZEB1P37275 1124 aaPredicted RBP13.66□□□□□ -0.22
FN1-227ENST00000498719 NPM1P06748 294 aaKnown RBP eCLIP13.64□□□□□ -0.23
FN1-227ENST00000498719 SOGA1O94964 1423 aa13.64□□□□□ -0.23
FN1-227ENST00000498719 PLEKHG5O94827 1062 aa13.62□□□□□ -0.23
FN1-227ENST00000498719 PKD2Q13563 968 aa13.62□□□□□ -0.23
FN1-227ENST00000498719 RUSC2Q8N2Y8 1516 aa13.6□□□□□ -0.23
FN1-227ENST00000498719 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.59□□□□□ -0.23
FN1-227ENST00000498719 BBXQ8WY36 941 aaPredicted RBP13.57□□□□□ -0.24
FN1-227ENST00000498719 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.55□□□□□ -0.24
FN1-227ENST00000498719 CEP162Q5TB80 1403 aa13.55□□□□□ -0.24
FN1-227ENST00000498719 PEG3Q9GZU2 1588 aa13.51□□□□□ -0.25
FN1-227ENST00000498719 WRNQ14191 1432 aaPredicted RBP eCLIP13.49□□□□□ -0.25
FN1-227ENST00000498719 TNIKQ9UKE5 1360 aa13.49□□□□□ -0.25
FN1-227ENST00000498719 CCER1Q8TC90 406 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms