RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 PPP1R15AO75807 674 aaPredicted RBP18.12■□□□□ 0.49
GAPVD1-220ENST00000497580 IL27Q8NEV9 243 aa18.11■□□□□ 0.49
GAPVD1-220ENST00000497580 CCER2I3L3R5 266 aa18.11■□□□□ 0.49
GAPVD1-220ENST00000497580 RAPGEF2Q9Y4G8 1499 aa18.08■□□□□ 0.48
GAPVD1-220ENST00000497580 RAB3GAP2Q9H2M9 1393 aa18.06■□□□□ 0.48
GAPVD1-220ENST00000497580 PPP4R2Q9NY27 417 aa18.06■□□□□ 0.48
GAPVD1-220ENST00000497580 FAM50AQ14320 339 aaKnown RBP18.04■□□□□ 0.48
GAPVD1-220ENST00000497580 KIF21BO75037 1637 aa18.03■□□□□ 0.48
GAPVD1-220ENST00000497580 CCNB3Q8WWL7 1395 aa18.02■□□□□ 0.47
GAPVD1-220ENST00000497580 WDR97A6NE52 1622 aa18.01■□□□□ 0.47
GAPVD1-220ENST00000497580 P3H3Q8IVL6 736 aa18.01■□□□□ 0.47
GAPVD1-220ENST00000497580 CNGB1Q14028 1251 aaPredicted RBP17.99■□□□□ 0.47
GAPVD1-220ENST00000497580 ANP32AP39687 249 aaKnown RBP17.98■□□□□ 0.47
GAPVD1-220ENST00000497580 FAM9BQ8IZU0 186 aa17.98■□□□□ 0.47
GAPVD1-220ENST00000497580 NPM2Q86SE8 214 aaKnown RBP17.97■□□□□ 0.47
GAPVD1-220ENST00000497580 EIF5BO60841 1220 aaKnown RBP17.97■□□□□ 0.47
GAPVD1-220ENST00000497580 SMARCA2P51531 1590 aa17.96■□□□□ 0.47
GAPVD1-220ENST00000497580 TOP2AP11388 1531 aaKnown RBP17.96■□□□□ 0.47
GAPVD1-220ENST00000497580 ZBTB47Q9UFB7 747 aaPredicted RBP17.96■□□□□ 0.47
GAPVD1-220ENST00000497580 BAZ1BQ9UIG0 1483 aaKnown RBP17.95■□□□□ 0.46
GAPVD1-220ENST00000497580 SENP3-EIF4A1A0A087X0R7 540 aa17.94■□□□□ 0.46
GAPVD1-220ENST00000497580 ERICH6BQ5W0A0 696 aa17.93■□□□□ 0.46
GAPVD1-220ENST00000497580 LAS1LQ9Y4W2 734 aaKnown RBP17.91■□□□□ 0.46
GAPVD1-220ENST00000497580 MAPKBP1O60336 1514 aa17.89■□□□□ 0.45
GAPVD1-220ENST00000497580 RRBP1Q9P2E9 1410 aaKnown RBP17.88■□□□□ 0.45
GAPVD1-220ENST00000497580 IPO9Q96P70 1041 aaKnown RBP17.86■□□□□ 0.45
GAPVD1-220ENST00000497580 SMARCA4P51532 1647 aa17.85■□□□□ 0.45
GAPVD1-220ENST00000497580 TONSLQ96HA7 1378 aa17.85■□□□□ 0.45
GAPVD1-220ENST00000497580 CCDC184Q52MB2 194 aa17.85■□□□□ 0.45
GAPVD1-220ENST00000497580 SETD5Q9C0A6 1442 aa17.84■□□□□ 0.45
GAPVD1-220ENST00000497580 PEG3Q9GZU2 1588 aa17.83■□□□□ 0.44
GAPVD1-220ENST00000497580 NEFMP07197 916 aa17.82■□□□□ 0.44
GAPVD1-220ENST00000497580 ARAP1Q96P48 1450 aa17.81■□□□□ 0.44
GAPVD1-220ENST00000497580 SYNJ1O43426 1573 aa17.81■□□□□ 0.44
GAPVD1-220ENST00000497580 MRS2Q9HD23 443 aa17.81■□□□□ 0.44
GAPVD1-220ENST00000497580 CUX2O14529 1486 aa17.74■□□□□ 0.43
GAPVD1-220ENST00000497580 BRPF3Q9ULD4 1205 aa17.73■□□□□ 0.43
GAPVD1-220ENST00000497580 UBE2Q2Q8WVN8 375 aa17.71■□□□□ 0.43
GAPVD1-220ENST00000497580 POLR3GLQ9BT43 218 aa17.69■□□□□ 0.42
GAPVD1-220ENST00000497580 TIMELESSQ9UNS1 1208 aa17.69■□□□□ 0.42
GAPVD1-220ENST00000497580 HSPA5P11021 654 aaKnown RBP17.67■□□□□ 0.42
GAPVD1-220ENST00000497580 ARID3CA6NKF2 412 aa17.65■□□□□ 0.42
GAPVD1-220ENST00000497580 WASHC2AQ641Q2 1341 aa17.65■□□□□ 0.42
GAPVD1-220ENST00000497580 AKNAQ7Z591 1439 aa17.65■□□□□ 0.42
GAPVD1-220ENST00000497580 CC2D2AQ9P2K1 1620 aa17.63■□□□□ 0.41
GAPVD1-220ENST00000497580 PHLDB1Q86UU1 1377 aa17.63■□□□□ 0.41
GAPVD1-220ENST00000497580 ZBED9Q6R2W3 1325 aa17.61■□□□□ 0.41
GAPVD1-220ENST00000497580 PRKRIP1Q9H875 184 aaPredicted RBP17.58■□□□□ 0.41
GAPVD1-220ENST00000497580 EIF4G2P78344 907 aaKnown RBP eCLIP17.57■□□□□ 0.4
GAPVD1-220ENST00000497580 HMGXB3Q12766 1538 aa17.55■□□□□ 0.4
GAPVD1-220ENST00000497580 ARHGAP35Q9NRY4 1499 aa17.54■□□□□ 0.4
GAPVD1-220ENST00000497580 CHIC2Q9UKJ5 165 aa17.54■□□□□ 0.4
GAPVD1-220ENST00000497580 SLC4A3P48751 1232 aa17.54■□□□□ 0.4
GAPVD1-220ENST00000497580 PPM1GO15355 546 aaPredicted RBP17.52■□□□□ 0.39
GAPVD1-220ENST00000497580 NCAPD3P42695 1498 aa17.51■□□□□ 0.39
GAPVD1-220ENST00000497580 PRXQ9BXM0 1461 aa17.51■□□□□ 0.39
GAPVD1-220ENST00000497580 DAXXQ9UER7 740 aaPredicted RBP17.51■□□□□ 0.39
GAPVD1-220ENST00000497580 ATAD2BQ9ULI0 1458 aa17.51■□□□□ 0.39
GAPVD1-220ENST00000497580 NUDCQ9Y266 331 aa17.5■□□□□ 0.39
GAPVD1-220ENST00000497580 C11orf95C9JLR9 678 aaPredicted RBP17.5■□□□□ 0.39
GAPVD1-220ENST00000497580 PDE4AP27815 886 aa17.5■□□□□ 0.39
GAPVD1-220ENST00000497580 GSE1Q14687 1217 aa17.49■□□□□ 0.39
GAPVD1-220ENST00000497580 USP35Q9P2H5 1018 aa17.49■□□□□ 0.39
GAPVD1-220ENST00000497580 SKAP1Q86WV1 359 aa17.47■□□□□ 0.39
GAPVD1-220ENST00000497580 KIF27Q86VH2 1401 aa17.47■□□□□ 0.39
GAPVD1-220ENST00000497580 FRAT1Q92837 279 aaPredicted RBP17.47■□□□□ 0.39
GAPVD1-220ENST00000497580 CNTLNQ9NXG0 1405 aa17.45■□□□□ 0.38
GAPVD1-220ENST00000497580 EXOC6Q8TAG9 804 aa17.45■□□□□ 0.38
GAPVD1-220ENST00000497580 WASHC2CQ9Y4E1 1318 aa17.44■□□□□ 0.38
GAPVD1-220ENST00000497580 ERICH3Q5RHP9 1530 aa17.43■□□□□ 0.38
GAPVD1-220ENST00000497580 RRP7BPQ9NSQ0 103 aa17.43■□□□□ 0.38
GAPVD1-220ENST00000497580 FHAD1B1AJZ9 1412 aa17.43■□□□□ 0.38
GAPVD1-220ENST00000497580 LRRC9Q6ZRR7 1453 aa17.43■□□□□ 0.38
GAPVD1-220ENST00000497580 NFKBIBQ15653 356 aa17.42■□□□□ 0.38
GAPVD1-220ENST00000497580 PKNOX2Q96KN3 472 aa17.42■□□□□ 0.38
GAPVD1-220ENST00000497580 FOXD1Q16676 465 aa17.42■□□□□ 0.38
GAPVD1-220ENST00000497580 ARXQ96QS3 562 aa17.41■□□□□ 0.38
GAPVD1-220ENST00000497580 ZNF326Q5BKZ1 582 aaKnown RBP17.4■□□□□ 0.38
GAPVD1-220ENST00000497580 TCERG1O14776 1098 aaKnown RBP17.4■□□□□ 0.38
GAPVD1-220ENST00000497580 CCDC18Q5T9S5 1454 aa17.39■□□□□ 0.38
GAPVD1-220ENST00000497580 TIAM1Q13009 1591 aa17.39■□□□□ 0.37
GAPVD1-220ENST00000497580 CCDC7Q96M83 1385 aa17.37■□□□□ 0.37
GAPVD1-220ENST00000497580 BACH2Q9BYV9 841 aa17.37■□□□□ 0.37
GAPVD1-220ENST00000497580 SMG6Q86US8 1419 aaKnown RBP17.37■□□□□ 0.37
GAPVD1-220ENST00000497580 L3MBTL2Q969R5 705 aa17.36■□□□□ 0.37
GAPVD1-220ENST00000497580 TMC1Q8TDI8 760 aa17.36■□□□□ 0.37
GAPVD1-220ENST00000497580 DNAJC5BQ9UF47 199 aa17.34■□□□□ 0.37
GAPVD1-220ENST00000497580 DDRGK1Q96HY6 314 aa17.33■□□□□ 0.36
GAPVD1-220ENST00000497580 CARMIL1Q5VZK9 1371 aa17.32■□□□□ 0.36
GAPVD1-220ENST00000497580 RSPH6AQ9H0K4 717 aa17.32■□□□□ 0.36
GAPVD1-220ENST00000497580 KIF7Q2M1P5 1343 aa17.32■□□□□ 0.36
GAPVD1-220ENST00000497580 TOP2BQ02880 1626 aa17.31■□□□□ 0.36
GAPVD1-220ENST00000497580 UACAQ9BZF9 1416 aa17.31■□□□□ 0.36
GAPVD1-220ENST00000497580 RRP1P56182 461 aaKnown RBP17.31■□□□□ 0.36
GAPVD1-220ENST00000497580 FHOD3Q2V2M9 1422 aa17.3■□□□□ 0.36
GAPVD1-220ENST00000497580 VSIG10Q8N0Z9 540 aa17.3■□□□□ 0.36
GAPVD1-220ENST00000497580 PLIN1O60240 522 aa17.3■□□□□ 0.36
GAPVD1-220ENST00000497580 FRAT2O75474 233 aaPredicted RBP17.3■□□□□ 0.36
GAPVD1-220ENST00000497580 AQRO60306 1485 aaKnown RBP eCLIP17.29■□□□□ 0.362e-6■■■■□ 19.6
GAPVD1-220ENST00000497580 MTUS2Q5JR59 1369 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms