RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 NISCHQ9Y2I1 1504 aa23.64■■□□□ 1.38
GAPVD1-220ENST00000497580 HRCP23327 699 aa22.1■■□□□ 1.13
GAPVD1-220ENST00000497580 PPARGC1BQ86YN6 1023 aaKnown RBP21.94■■□□□ 1.1
GAPVD1-220ENST00000497580 PCGF6Q9BYE7 350 aa21.84■■□□□ 1.09
GAPVD1-220ENST00000497580 SHROOM4Q9ULL8 1493 aa21.84■■□□□ 1.09
GAPVD1-220ENST00000497580 SUPT5HO00267 1087 aaKnown RBP21.81■■□□□ 1.08
GAPVD1-220ENST00000497580 PELP1Q8IZL8 1130 aaKnown RBP21.51■■□□□ 1.03
GAPVD1-220ENST00000497580 DCAF8L2P0C7V8 631 aa21.3■■□□□ 1
GAPVD1-220ENST00000497580 MYO15BQ96JP2 1530 aa21.25■□□□□ 0.99
GAPVD1-220ENST00000497580 CHIC1Q5VXU3 224 aa21.17■□□□□ 0.98
GAPVD1-220ENST00000497580 SCAF1Q9H7N4 1312 aaKnown RBP21.11■□□□□ 0.97
GAPVD1-220ENST00000497580 LOC105371045A0A1W2PR82 267 aa20.95■□□□□ 0.94
GAPVD1-220ENST00000497580 TRIM26Q12899 539 aaPredicted RBP20.81■□□□□ 0.92
GAPVD1-220ENST00000497580 MYT1Q01538 1121 aa20.66■□□□□ 0.9
GAPVD1-220ENST00000497580 DCAF1Q9Y4B6 1507 aa20.64■□□□□ 0.89
GAPVD1-220ENST00000497580 ZEB1P37275 1124 aaPredicted RBP20.64■□□□□ 0.89
GAPVD1-220ENST00000497580 EHMT2Q96KQ7 1210 aa20.56■□□□□ 0.88
GAPVD1-220ENST00000497580 CCDC180Q9P1Z9 1646 aa20.52■□□□□ 0.88
GAPVD1-220ENST00000497580 NEUROD1Q13562 356 aa20.51■□□□□ 0.87
GAPVD1-220ENST00000497580 ACIN1Q9UKV3 1341 aaKnown RBP20.49■□□□□ 0.87
GAPVD1-220ENST00000497580 GTF3C3Q9Y5Q9 886 aa20.49■□□□□ 0.87
GAPVD1-220ENST00000497580 CENPBP07199 599 aaPredicted RBP20.3■□□□□ 0.84
GAPVD1-220ENST00000497580 FAM9AQ8IZU1 332 aaPredicted RBP20.29■□□□□ 0.84
GAPVD1-220ENST00000497580 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.18■□□□□ 0.82
GAPVD1-220ENST00000497580 YTHDC1Q96MU7 727 aaKnown RBP20.16■□□□□ 0.82
GAPVD1-220ENST00000497580 CCER1Q8TC90 406 aaPredicted RBP20.15■□□□□ 0.82
GAPVD1-220ENST00000497580 DIEXFQ68CQ4 756 aaKnown RBP20.14■□□□□ 0.81
GAPVD1-220ENST00000497580 ZCCHC6Q5VYS8 1495 aaKnown RBP20■□□□□ 0.79
GAPVD1-220ENST00000497580 TTBK1Q5TCY1 1321 aaPredicted RBP19.98■□□□□ 0.79
GAPVD1-220ENST00000497580 TRIM41Q8WV44 630 aa19.97■□□□□ 0.79
GAPVD1-220ENST00000497580 ZNF316A6NFI3 1004 aaPredicted RBP19.61■□□□□ 0.73
GAPVD1-220ENST00000497580 MIER1Q8N108 512 aa19.6■□□□□ 0.73
GAPVD1-220ENST00000497580 BCL11AQ9H165 835 aa19.59■□□□□ 0.73
GAPVD1-220ENST00000497580 ANP32EQ9BTT0 268 aa19.41■□□□□ 0.7
GAPVD1-220ENST00000497580 SUPT16HQ9Y5B9 1047 aaKnown RBP19.33■□□□□ 0.68
GAPVD1-220ENST00000497580 CSRNP3Q8WYN3 585 aa19.32■□□□□ 0.68
GAPVD1-220ENST00000497580 TSHZ2Q9NRE2 1034 aa19.29■□□□□ 0.68
GAPVD1-220ENST00000497580 HNRNPUL2Q1KMD3 747 aaKnown RBP19.28■□□□□ 0.68
GAPVD1-220ENST00000497580 BCANQ96GW7 911 aa19.27■□□□□ 0.67
GAPVD1-220ENST00000497580 RANGAP1P46060 587 aaPredicted RBP19.19■□□□□ 0.66
GAPVD1-220ENST00000497580 RSF1Q96T23 1441 aaPredicted RBP19.17■□□□□ 0.66
GAPVD1-220ENST00000497580 ABCC9O60706 1549 aa19.16■□□□□ 0.66
GAPVD1-220ENST00000497580 RB1CC1Q8TDY2 1594 aa19.14■□□□□ 0.65
GAPVD1-220ENST00000497580 SCRIBQ14160 1630 aa19.14■□□□□ 0.65
GAPVD1-220ENST00000497580 UBTFP17480 764 aaKnown RBP19.05■□□□□ 0.64
GAPVD1-220ENST00000497580 NACADO15069 1562 aa19.03■□□□□ 0.64
GAPVD1-220ENST00000497580 CLSPNQ9HAW4 1339 aa18.98■□□□□ 0.63
GAPVD1-220ENST00000497580 FKBP8Q14318 412 aa18.94■□□□□ 0.62
GAPVD1-220ENST00000497580 CEP162Q5TB80 1403 aa18.93■□□□□ 0.62
GAPVD1-220ENST00000497580 ITGAEP38570 1179 aa18.89■□□□□ 0.61
GAPVD1-220ENST00000497580 KCNH8Q96L42 1107 aa18.87■□□□□ 0.61
GAPVD1-220ENST00000497580 RBM19Q9Y4C8 960 aaKnown RBP18.86■□□□□ 0.61
GAPVD1-220ENST00000497580 CECR2Q9BXF3 1484 aa18.85■□□□□ 0.61
GAPVD1-220ENST00000497580 PRKCSHP14314 528 aaPredicted RBP18.85■□□□□ 0.61
GAPVD1-220ENST00000497580 ERICH6Q7L0X2 663 aa18.84■□□□□ 0.61
GAPVD1-220ENST00000497580 NEFLP07196 543 aa18.8■□□□□ 0.6
GAPVD1-220ENST00000497580 WRNQ14191 1432 aaPredicted RBP eCLIP18.8■□□□□ 0.67e-6■■■■■ 39.7
GAPVD1-220ENST00000497580 APLP2Q06481 763 aa18.79■□□□□ 0.6
GAPVD1-220ENST00000497580 UNC13AQ9UPW8 1703 aa18.79■□□□□ 0.6
GAPVD1-220ENST00000497580 SOGA1O94964 1423 aa18.66■□□□□ 0.58
GAPVD1-220ENST00000497580 TNIKQ9UKE5 1360 aa18.66■□□□□ 0.58
GAPVD1-220ENST00000497580 MSH5O43196 834 aa18.66■□□□□ 0.58
GAPVD1-220ENST00000497580 TRIM52Q96A61 297 aa18.65■□□□□ 0.58
GAPVD1-220ENST00000497580 CCDC88BA6NC98 1476 aa18.64■□□□□ 0.57
GAPVD1-220ENST00000497580 MROH2BQ7Z745 1585 aa18.64■□□□□ 0.57
GAPVD1-220ENST00000497580 ABCC8Q09428 1581 aa18.6■□□□□ 0.57
GAPVD1-220ENST00000497580 PABPN1Q86U42 306 aaKnown RBP eCLIP18.59■□□□□ 0.57
GAPVD1-220ENST00000497580 DDX10Q13206 875 aaKnown RBP18.58■□□□□ 0.56
GAPVD1-220ENST00000497580 IRX6P78412 446 aaPredicted RBP18.56■□□□□ 0.56
GAPVD1-220ENST00000497580 WIZO95785 1651 aa18.53■□□□□ 0.56
GAPVD1-220ENST00000497580 RUSC2Q8N2Y8 1516 aa18.53■□□□□ 0.56
GAPVD1-220ENST00000497580 BICRAQ9NZM4 1560 aa18.5■□□□□ 0.55
GAPVD1-220ENST00000497580 DEKP35659 375 aaKnown RBP18.49■□□□□ 0.55
GAPVD1-220ENST00000497580 HIRIP3Q9BW71 556 aaPredicted RBP18.48■□□□□ 0.55
GAPVD1-220ENST00000497580 DHX57Q6P158 1386 aaKnown RBP18.48■□□□□ 0.55
GAPVD1-220ENST00000497580 CDK11AQ9UQ88 783 aaPredicted RBP18.47■□□□□ 0.55
GAPVD1-220ENST00000497580 NBR1Q14596 966 aa18.46■□□□□ 0.55
GAPVD1-220ENST00000497580 ANO8Q9HCE9 1232 aaPredicted RBP18.45■□□□□ 0.54
GAPVD1-220ENST00000497580 CLIP1P30622 1438 aa18.42■□□□□ 0.54
GAPVD1-220ENST00000497580 GOLGA3Q08378 1498 aa18.42■□□□□ 0.54
GAPVD1-220ENST00000497580 FANCIQ9NVI1 1328 aa18.32■□□□□ 0.52
GAPVD1-220ENST00000497580 ANP32CO43423 234 aa18.32■□□□□ 0.52
GAPVD1-220ENST00000497580 CCDC136Q96JN2 1154 aa18.31■□□□□ 0.52
GAPVD1-220ENST00000497580 VPS8Q8N3P4 1428 aa18.29■□□□□ 0.52
GAPVD1-220ENST00000497580 RTN4Q9NQC3 1192 aaKnown RBP18.29■□□□□ 0.52
GAPVD1-220ENST00000497580 ATP1B4Q9UN42 357 aaPredicted RBP18.27■□□□□ 0.52
GAPVD1-220ENST00000497580 HNRNPUQ00839 825 aaKnown RBP eCLIP18.27■□□□□ 0.51
GAPVD1-220ENST00000497580 EEA1Q15075 1411 aa18.26■□□□□ 0.51
GAPVD1-220ENST00000497580 SALL2Q9Y467 1007 aaPredicted RBP18.26■□□□□ 0.51
GAPVD1-220ENST00000497580 KANK4Q5T7N3 995 aaPredicted RBP18.25■□□□□ 0.51
GAPVD1-220ENST00000497580 SIN3AQ96ST3 1273 aa18.24■□□□□ 0.51
GAPVD1-220ENST00000497580 MYT1LQ9UL68 1186 aa18.23■□□□□ 0.51
GAPVD1-220ENST00000497580 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.19■□□□□ 0.5
GAPVD1-220ENST00000497580 EIF4G1Q04637 1599 aaKnown RBP18.19■□□□□ 0.5
GAPVD1-220ENST00000497580 B4GALNT3Q6L9W6 998 aa18.18■□□□□ 0.5
GAPVD1-220ENST00000497580 RTL5Q5HYW3 569 aaPredicted RBP18.17■□□□□ 0.5
GAPVD1-220ENST00000497580 CEP164Q9UPV0 1460 aa18.17■□□□□ 0.5
GAPVD1-220ENST00000497580 NOP58Q9Y2X3 529 aaKnown RBP18.15■□□□□ 0.5
GAPVD1-220ENST00000497580 BAZ1AQ9NRL2 1556 aaPredicted RBP18.15■□□□□ 0.5
GAPVD1-220ENST00000497580 PAK3O75914 559 aaPredicted RBP18.14■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms