RNA–Protein interactions for RNA: ENST00000495010.5

VARS-228, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 1,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-228ENST00000495010 KIF13AQ9H1H9 1805 aa25.21■■□□□ 1.63
VARS-228ENST00000495010 RUSC2Q8N2Y8 1516 aa25.19■■□□□ 1.62
VARS-228ENST00000495010 FAM69CQ0P6D2 419 aa25.18■■□□□ 1.62
VARS-228ENST00000495010 ABCC10Q5T3U5 1492 aa25.12■■□□□ 1.61
VARS-228ENST00000495010 MAPKBP1O60336 1514 aa25.07■■□□□ 1.6
VARS-228ENST00000495010 KIAA0586Q9BVV6 1533 aa25.07■■□□□ 1.6
VARS-228ENST00000495010 KIF27Q86VH2 1401 aa25.07■■□□□ 1.6
VARS-228ENST00000495010 IGF1RP08069 1367 aa25.05■■□□□ 1.6
VARS-228ENST00000495010 ADCY10Q96PN6 1610 aa25.04■■□□□ 1.6
VARS-228ENST00000495010 DIP2BQ9P265 1576 aa25.02■■□□□ 1.6
VARS-228ENST00000495010 CUL7Q14999 1698 aa25.02■■□□□ 1.6
VARS-228ENST00000495010 TTBK1Q5TCY1 1321 aaPredicted RBP24.96■■□□□ 1.59
VARS-228ENST00000495010 PTPRGP23470 1445 aa24.94■■□□□ 1.58
VARS-228ENST00000495010 KDM6BO15054 1643 aa24.92■■□□□ 1.58
VARS-228ENST00000495010 CARMIL1Q5VZK9 1371 aa24.92■■□□□ 1.58
VARS-228ENST00000495010 TSPOAP1O95153 1857 aa24.9■■□□□ 1.58
VARS-228ENST00000495010 CARMIL2Q6F5E8 1435 aa24.9■■□□□ 1.58
VARS-228ENST00000495010 TNIKQ9UKE5 1360 aa24.86■■□□□ 1.57
VARS-228ENST00000495010 ABCC2Q92887 1545 aa24.81■■□□□ 1.56
VARS-228ENST00000495010 IQGAP2Q13576 1575 aa24.8■■□□□ 1.56
VARS-228ENST00000495010 KDM4FA0A1W2PPD8 638 aa24.78■■□□□ 1.56
VARS-228ENST00000495010 PLB1Q6P1J6 1458 aa24.77■■□□□ 1.56
VARS-228ENST00000495010 ASXL2Q76L83 1435 aa24.76■■□□□ 1.55
VARS-228ENST00000495010 UACAQ9BZF9 1416 aa24.72■■□□□ 1.55
VARS-228ENST00000495010 UHRF1BP1LA0JNW5 1464 aa24.71■■□□□ 1.55
VARS-228ENST00000495010 GLI2P10070 1586 aa24.7■■□□□ 1.54
VARS-228ENST00000495010 DISP1Q96F81 1524 aa24.66■■□□□ 1.54
VARS-228ENST00000495010 RAPGEF2Q9Y4G8 1499 aa24.64■■□□□ 1.54
VARS-228ENST00000495010 PPRC1Q5VV67 1664 aaKnown RBP24.62■■□□□ 1.53
VARS-228ENST00000495010 EPRSP07814 1512 aaKnown RBP24.6■■□□□ 1.53
VARS-228ENST00000495010 UGGT2Q9NYU1 1516 aa24.6■■□□□ 1.53
VARS-228ENST00000495010 KDM5BQ9UGL1 1544 aa24.6■■□□□ 1.53
VARS-228ENST00000495010 TEX14Q8IWB6 1497 aa24.57■■□□□ 1.52
VARS-228ENST00000495010 KIAA0556O60303 1618 aa24.56■■□□□ 1.52
VARS-228ENST00000495010 ZCCHC11Q5TAX3 1644 aaKnown RBP24.55■■□□□ 1.52
VARS-228ENST00000495010 MAP3K4Q9Y6R4 1608 aa24.53■■□□□ 1.52
VARS-228ENST00000495010 ADGRL1O94910 1474 aa24.53■■□□□ 1.52
VARS-228ENST00000495010 COL17A1Q9UMD9 1497 aaPredicted RBP24.5■■□□□ 1.51
VARS-228ENST00000495010 WDR7Q9Y4E6 1490 aa24.47■■□□□ 1.51
VARS-228ENST00000495010 GOLGA3Q08378 1498 aa24.45■■□□□ 1.5
VARS-228ENST00000495010 CTTNBP2Q8WZ74 1663 aa24.43■■□□□ 1.5
VARS-228ENST00000495010 KCNH8Q96L42 1107 aa24.42■■□□□ 1.5
VARS-228ENST00000495010 FAM9AQ8IZU1 332 aaPredicted RBP24.4■■□□□ 1.5
VARS-228ENST00000495010 CD109Q6YHK3 1445 aa24.38■■□□□ 1.49
VARS-228ENST00000495010 ILDR1Q86SU0 546 aaPredicted RBP24.35■■□□□ 1.49
VARS-228ENST00000495010 CFAP43Q8NDM7 1665 aa24.34■■□□□ 1.49
VARS-228ENST00000495010 ABCA8O94911 1581 aa24.33■■□□□ 1.49
VARS-228ENST00000495010 MAGI3Q5TCQ9 1506 aa24.33■■□□□ 1.49
VARS-228ENST00000495010 PRXQ9BXM0 1461 aa24.27■■□□□ 1.48
VARS-228ENST00000495010 HECW2Q9P2P5 1572 aa24.26■■□□□ 1.47
VARS-228ENST00000495010 ARID3CA6NKF2 412 aa24.24■■□□□ 1.47
VARS-228ENST00000495010 P3H3Q8IVL6 736 aa24.24■■□□□ 1.47
VARS-228ENST00000495010 ATP10BO94823 1461 aa24.15■■□□□ 1.46
VARS-228ENST00000495010 ARAP3Q8WWN8 1544 aa24.15■■□□□ 1.46
VARS-228ENST00000495010 KIF21BO75037 1637 aa24.14■■□□□ 1.46
VARS-228ENST00000495010 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.14■■□□□ 1.45
VARS-228ENST00000495010 HNRNPUL2Q1KMD3 747 aaKnown RBP24.14■■□□□ 1.45
VARS-228ENST00000495010 PHLDB1Q86UU1 1377 aa24.12■■□□□ 1.45
VARS-228ENST00000495010 CSRNP3Q8WYN3 585 aa24.09■■□□□ 1.45
VARS-228ENST00000495010 ABCA9Q8IUA7 1624 aa24.08■■□□□ 1.45
VARS-228ENST00000495010 RAPGEF6Q8TEU7 1601 aa24.05■■□□□ 1.44
VARS-228ENST00000495010 SAMD9Q5K651 1589 aa24.04■■□□□ 1.44
VARS-228ENST00000495010 RAPGEF3O95398 923 aa24.04■■□□□ 1.44
VARS-228ENST00000495010 RANGAP1P46060 587 aaPredicted RBP24.03■■□□□ 1.44
VARS-228ENST00000495010 NEO1Q92859 1461 aa24.02■■□□□ 1.44
VARS-228ENST00000495010 ARID4BQ4LE39 1312 aaPredicted RBP24■■□□□ 1.43
VARS-228ENST00000495010 PTPRMP28827 1452 aa23.97■■□□□ 1.43
VARS-228ENST00000495010 PLEKHD1A6NEE1 506 aa23.95■■□□□ 1.42
VARS-228ENST00000495010 ADAMTSL3P82987 1691 aa23.94■■□□□ 1.42
VARS-228ENST00000495010 NUP153P49790 1475 aaKnown RBP23.94■■□□□ 1.42
VARS-228ENST00000495010 EEA1Q15075 1411 aa23.92■■□□□ 1.42
VARS-228ENST00000495010 FHOD3Q2V2M9 1422 aa23.92■■□□□ 1.42
VARS-228ENST00000495010 BCORL1Q5H9F3 1711 aa23.88■■□□□ 1.41
VARS-228ENST00000495010 FRMPD1Q5SYB0 1578 aa23.88■■□□□ 1.41
VARS-228ENST00000495010 DENND4BO75064 1496 aaPredicted RBP23.87■■□□□ 1.41
VARS-228ENST00000495010 FBXO41Q8TF61 875 aa23.87■■□□□ 1.41
VARS-228ENST00000495010 AKNAQ7Z591 1439 aa23.84■■□□□ 1.41
VARS-228ENST00000495010 MADDQ8WXG6 1647 aa23.84■■□□□ 1.41
VARS-228ENST00000495010 CFAP74Q9C0B2 1584 aa23.82■■□□□ 1.4
VARS-228ENST00000495010 FANCAO15360 1455 aa23.82■■□□□ 1.4
VARS-228ENST00000495010 ARHGEF40Q8TER5 1519 aa23.81■■□□□ 1.4
VARS-228ENST00000495010 PCF11O94913 1555 aaKnown RBP23.79■■□□□ 1.4
VARS-228ENST00000495010 POGZQ7Z3K3 1410 aa23.79■■□□□ 1.4
VARS-228ENST00000495010 EFCAB5A4FU69 1503 aa23.79■■□□□ 1.4
VARS-228ENST00000495010 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.79■■□□□ 1.4
VARS-228ENST00000495010 RICTORQ6R327 1708 aa23.79■■□□□ 1.4
VARS-228ENST00000495010 PLPPR3Q6T4P5 718 aa23.78■■□□□ 1.4
VARS-228ENST00000495010 RIMS1Q86UR5 1692 aaKnown RBP23.77■■□□□ 1.4
VARS-228ENST00000495010 LMTK3Q96Q04 1460 aa23.74■■□□□ 1.39
VARS-228ENST00000495010 TTC37Q6PGP7 1564 aa23.74■■□□□ 1.39
VARS-228ENST00000495010 ZFYVE16Q7Z3T8 1539 aa23.73■■□□□ 1.39
VARS-228ENST00000495010 ATP1B4Q9UN42 357 aaPredicted RBP23.72■■□□□ 1.39
VARS-228ENST00000495010 ZMYM4Q5VZL5 1548 aa23.7■■□□□ 1.38
VARS-228ENST00000495010 MLECQ14165 292 aa23.7■■□□□ 1.38
VARS-228ENST00000495010 CDK13Q14004 1512 aaKnown RBP23.69■■□□□ 1.38
VARS-228ENST00000495010 MAGI2Q86UL8 1455 aa23.69■■□□□ 1.38
VARS-228ENST00000495010 YEATS2Q9ULM3 1422 aa23.68■■□□□ 1.38
VARS-228ENST00000495010 SCAPERQ9BY12 1400 aa23.67■■□□□ 1.38
VARS-228ENST00000495010 UBTFP17480 764 aaKnown RBP23.67■■□□□ 1.38
VARS-228ENST00000495010 HSPA2P54652 639 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms