RNA–Protein interactions for RNA: ENST00000494187.1

MINDY4-203, Transcript of MINDY lysine 48 deubiquitinase 4, humanhuman

TSL 2

Gene MINDY4, Length 3,573 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MINDY4-203ENST00000494187 MTUS2Q5JR59 1369 aa13.34□□□□□ -0.27
MINDY4-203ENST00000494187 FHOD3Q2V2M9 1422 aa13.3□□□□□ -0.28
MINDY4-203ENST00000494187 ACIN1Q9UKV3 1341 aaKnown RBP13.3□□□□□ -0.28
MINDY4-203ENST00000494187 NCAPD3P42695 1498 aa13.29□□□□□ -0.28
MINDY4-203ENST00000494187 FOXD1Q16676 465 aa13.29□□□□□ -0.28
MINDY4-203ENST00000494187 IGF1RP08069 1367 aa13.28□□□□□ -0.28
MINDY4-203ENST00000494187 FANCD2Q9BXW9 1451 aa13.27□□□□□ -0.28
MINDY4-203ENST00000494187 SENP3Q9H4L4 574 aaPredicted RBP13.27□□□□□ -0.29
MINDY4-203ENST00000494187 FGD5Q6ZNL6 1462 aa13.26□□□□□ -0.29
MINDY4-203ENST00000494187 KCNH8Q96L42 1107 aa13.24□□□□□ -0.29
MINDY4-203ENST00000494187 CCNB3Q8WWL7 1395 aa13.24□□□□□ -0.29
MINDY4-203ENST00000494187 ERICH6Q7L0X2 663 aa13.24□□□□□ -0.29
MINDY4-203ENST00000494187 CUX1P39880 1505 aa13.23□□□□□ -0.29
MINDY4-203ENST00000494187 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.21□□□□□ -0.3
MINDY4-203ENST00000494187 ARAP1Q96P48 1450 aa13.2□□□□□ -0.3
MINDY4-203ENST00000494187 ERCC6Q03468 1493 aa13.19□□□□□ -0.3
MINDY4-203ENST00000494187 CFTRP13569 1480 aa13.18□□□□□ -0.3
MINDY4-203ENST00000494187 KDM2AQ9Y2K7 1162 aa13.18□□□□□ -0.3
MINDY4-203ENST00000494187 KIF21BO75037 1637 aa13.17□□□□□ -0.3
MINDY4-203ENST00000494187 TONSLQ96HA7 1378 aa13.16□□□□□ -0.3
MINDY4-203ENST00000494187 AQRO60306 1485 aaKnown RBP eCLIP13.15□□□□□ -0.35e-6■■■□□ 16.9
MINDY4-203ENST00000494187 RAB3GAP2Q9H2M9 1393 aa13.15□□□□□ -0.3
MINDY4-203ENST00000494187 CDK11AQ9UQ88 783 aaPredicted RBP13.11□□□□□ -0.31
MINDY4-203ENST00000494187 PDS5BQ9NTI5 1447 aa13.11□□□□□ -0.31
MINDY4-203ENST00000494187 ANP32CO43423 234 aa13.1□□□□□ -0.31
MINDY4-203ENST00000494187 SLC4A1APQ9BWU0 796 aaKnown RBP13.1□□□□□ -0.31
MINDY4-203ENST00000494187 ARHGAP35Q9NRY4 1499 aa13.09□□□□□ -0.31
MINDY4-203ENST00000494187 CFDP1Q9UEE9 299 aaPredicted RBP13.09□□□□□ -0.31
MINDY4-203ENST00000494187 RGL3Q3MIN7 710 aa13.09□□□□□ -0.31
MINDY4-203ENST00000494187 TOP2BQ02880 1626 aa13.08□□□□□ -0.31
MINDY4-203ENST00000494187 PHLDB1Q86UU1 1377 aa13.08□□□□□ -0.32
MINDY4-203ENST00000494187 NEFLP07196 543 aa13.08□□□□□ -0.32
MINDY4-203ENST00000494187 PRXQ9BXM0 1461 aa13.08□□□□□ -0.32
MINDY4-203ENST00000494187 ZNF644Q9H582 1327 aaPredicted RBP13.08□□□□□ -0.32
MINDY4-203ENST00000494187 DHX57Q6P158 1386 aaKnown RBP13.07□□□□□ -0.32
MINDY4-203ENST00000494187 HMGXB3Q12766 1538 aa13.07□□□□□ -0.32
MINDY4-203ENST00000494187 SALL2Q9Y467 1007 aaPredicted RBP13.07□□□□□ -0.32
MINDY4-203ENST00000494187 IRX6P78412 446 aaPredicted RBP13.06□□□□□ -0.32
MINDY4-203ENST00000494187 FAM9BQ8IZU0 186 aa13.05□□□□□ -0.32
MINDY4-203ENST00000494187 FHAD1B1AJZ9 1412 aa13.04□□□□□ -0.32
MINDY4-203ENST00000494187 POLA1P09884 1462 aaPredicted RBP13.04□□□□□ -0.32
MINDY4-203ENST00000494187 PLEKHD1A6NEE1 506 aa13.03□□□□□ -0.32
MINDY4-203ENST00000494187 PEG3Q9GZU2 1588 aa13.02□□□□□ -0.32
MINDY4-203ENST00000494187 SLC24A1O60721 1099 aa13.01□□□□□ -0.33
MINDY4-203ENST00000494187 GAPVD1Q14C86 1478 aa13.01□□□□□ -0.33
MINDY4-203ENST00000494187 SETD5Q9C0A6 1442 aa13.01□□□□□ -0.33
MINDY4-203ENST00000494187 TOPBP1Q92547 1522 aa13□□□□□ -0.33
MINDY4-203ENST00000494187 TSPY4P0CV99 314 aa13□□□□□ -0.33
MINDY4-203ENST00000494187 TSPY10P0CW01 314 aa13□□□□□ -0.33
MINDY4-203ENST00000494187 HNRNPUQ00839 825 aaKnown RBP eCLIP12.99□□□□□ -0.33
MINDY4-203ENST00000494187 JPH4Q96JJ6 628 aa12.99□□□□□ -0.33
MINDY4-203ENST00000494187 PLPPR3Q6T4P5 718 aa12.99□□□□□ -0.33
MINDY4-203ENST00000494187 CHGAP10645 457 aaKnown RBP12.98□□□□□ -0.33
MINDY4-203ENST00000494187 FKBP8Q14318 412 aa12.98□□□□□ -0.33
MINDY4-203ENST00000494187 HNRNPMP52272 730 aaKnown RBP eCLIP12.95□□□□□ -0.34
MINDY4-203ENST00000494187 FMN1Q68DA7 1419 aa12.92□□□□□ -0.34
MINDY4-203ENST00000494187 MPHOSPH9Q99550 1183 aa12.91□□□□□ -0.34
MINDY4-203ENST00000494187 PPP1R15AO75807 674 aaPredicted RBP12.9□□□□□ -0.34
MINDY4-203ENST00000494187 L3MBTL2Q969R5 705 aa12.9□□□□□ -0.34
MINDY4-203ENST00000494187 URB2Q14146 1524 aaKnown RBP12.9□□□□□ -0.34
MINDY4-203ENST00000494187 LRRC9Q6ZRR7 1453 aa12.9□□□□□ -0.35
MINDY4-203ENST00000494187 EIF4G2P78344 907 aaKnown RBP eCLIP12.89□□□□□ -0.35
MINDY4-203ENST00000494187 DNAJC5Q9H3Z4 198 aa12.89□□□□□ -0.35
MINDY4-203ENST00000494187 PKD2Q13563 968 aa12.89□□□□□ -0.35
MINDY4-203ENST00000494187 LAMC3Q9Y6N6 1575 aa12.88□□□□□ -0.35
MINDY4-203ENST00000494187 HSPA5P11021 654 aaKnown RBP12.87□□□□□ -0.35
MINDY4-203ENST00000494187 MRS2Q9HD23 443 aa12.87□□□□□ -0.35
MINDY4-203ENST00000494187 ZNF608Q9ULD9 1512 aaPredicted RBP12.87□□□□□ -0.35
MINDY4-203ENST00000494187 ERICH3Q5RHP9 1530 aa12.86□□□□□ -0.35
MINDY4-203ENST00000494187 DCAF11Q8TEB1 546 aa12.85□□□□□ -0.35
MINDY4-203ENST00000494187 CLSPNQ9HAW4 1339 aa12.82□□□□□ -0.36
MINDY4-203ENST00000494187 FGD6Q6ZV73 1430 aa12.81□□□□□ -0.36
MINDY4-203ENST00000494187 BIVM-ERCC5R4GMW8 1640 aa12.8□□□□□ -0.36
MINDY4-203ENST00000494187 CARD11Q9BXL7 1154 aa12.8□□□□□ -0.36
MINDY4-203ENST00000494187 DNMBPQ6XZF7 1577 aa12.79□□□□□ -0.36
MINDY4-203ENST00000494187 NPM1P06748 294 aaKnown RBP eCLIP12.79□□□□□ -0.36
MINDY4-203ENST00000494187 CDK13Q14004 1512 aaKnown RBP12.79□□□□□ -0.36
MINDY4-203ENST00000494187 RRBP1Q9P2E9 1410 aaKnown RBP12.79□□□□□ -0.36
MINDY4-203ENST00000494187 SUPT16HQ9Y5B9 1047 aaKnown RBP12.79□□□□□ -0.36
MINDY4-203ENST00000494187 ANP32EQ9BTT0 268 aa12.78□□□□□ -0.36
MINDY4-203ENST00000494187 NCOA2Q15596 1464 aa12.78□□□□□ -0.36
MINDY4-203ENST00000494187 NUP155O75694 1391 aa12.77□□□□□ -0.36
MINDY4-203ENST00000494187 ABCA10Q8WWZ4 1543 aa12.77□□□□□ -0.37
MINDY4-203ENST00000494187 PRDM2Q13029 1718 aa12.77□□□□□ -0.37
MINDY4-203ENST00000494187 PCF11O94913 1555 aaKnown RBP12.77□□□□□ -0.37
MINDY4-203ENST00000494187 CCDC18Q5T9S5 1454 aa12.77□□□□□ -0.37
MINDY4-203ENST00000494187 PRG4Q92954 1404 aaPredicted RBP12.76□□□□□ -0.37
MINDY4-203ENST00000494187 CASKIN1Q8WXD9 1431 aa12.76□□□□□ -0.37
MINDY4-203ENST00000494187 TIAM1Q13009 1591 aa12.75□□□□□ -0.37
MINDY4-203ENST00000494187 NUTM2DQ5VT03 806 aaPredicted RBP12.75□□□□□ -0.37
MINDY4-203ENST00000494187 TMC1Q8TDI8 760 aa12.75□□□□□ -0.37
MINDY4-203ENST00000494187 SNAPC4Q5SXM2 1469 aa12.74□□□□□ -0.37
MINDY4-203ENST00000494187 MRC2Q9UBG0 1479 aa12.74□□□□□ -0.37
MINDY4-203ENST00000494187 KIF21AQ7Z4S6 1674 aa12.73□□□□□ -0.37
MINDY4-203ENST00000494187 MYOM3Q5VTT5 1437 aa12.72□□□□□ -0.37
MINDY4-203ENST00000494187 CARMIL2Q6F5E8 1435 aa12.72□□□□□ -0.37
MINDY4-203ENST00000494187 CC2D1BQ5T0F9 858 aaKnown RBP12.72□□□□□ -0.37
MINDY4-203ENST00000494187 GGT6Q6P531 493 aa12.71□□□□□ -0.37
MINDY4-203ENST00000494187 GRIN2BQ13224 1484 aa12.71□□□□□ -0.37
MINDY4-203ENST00000494187 THOC2Q8NI27 1593 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms