RNA–Protein interactions for RNA: ENST00000494187.1

MINDY4-203, Transcript of MINDY lysine 48 deubiquitinase 4, humanhuman

TSL 2

Gene MINDY4, Length 3,573 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MINDY4-203ENST00000494187 NISCHQ9Y2I1 1504 aa18.14■□□□□ 0.49
MINDY4-203ENST00000494187 DCAF8L2P0C7V8 631 aa17.15■□□□□ 0.34
MINDY4-203ENST00000494187 SHROOM4Q9ULL8 1493 aa16.8■□□□□ 0.28
MINDY4-203ENST00000494187 SUPT5HO00267 1087 aaKnown RBP16.56■□□□□ 0.24
MINDY4-203ENST00000494187 EHMT2Q96KQ7 1210 aa15.9■□□□□ 0.14
MINDY4-203ENST00000494187 FAM9AQ8IZU1 332 aaPredicted RBP15.55■□□□□ 0.08
MINDY4-203ENST00000494187 ABCC9O60706 1549 aa15.36■□□□□ 0.05
MINDY4-203ENST00000494187 LOC105371045A0A1W2PR82 267 aa15.28■□□□□ 0.04
MINDY4-203ENST00000494187 CHIC1Q5VXU3 224 aa15.24■□□□□ 0.03
MINDY4-203ENST00000494187 TTBK1Q5TCY1 1321 aaPredicted RBP15.24■□□□□ 0.03
MINDY4-203ENST00000494187 PCGF6Q9BYE7 350 aa15.23■□□□□ 0.03
MINDY4-203ENST00000494187 PPARGC1BQ86YN6 1023 aaKnown RBP15.13■□□□□ 0.01
MINDY4-203ENST00000494187 TRIM41Q8WV44 630 aa15.12■□□□□ 0.01
MINDY4-203ENST00000494187 ZCCHC6Q5VYS8 1495 aaKnown RBP15.12■□□□□ 0.01
MINDY4-203ENST00000494187 PABPN1Q86U42 306 aaKnown RBP eCLIP15.11■□□□□ 0.01
MINDY4-203ENST00000494187 CCDC180Q9P1Z9 1646 aa15.06■□□□□ 0
MINDY4-203ENST00000494187 RANGAP1P46060 587 aaPredicted RBP15.06■□□□□ 0
MINDY4-203ENST00000494187 SCRIBQ14160 1630 aa14.9□□□□□ -0.02
MINDY4-203ENST00000494187 PELP1Q8IZL8 1130 aaKnown RBP14.81□□□□□ -0.04
MINDY4-203ENST00000494187 MYO15BQ96JP2 1530 aa14.77□□□□□ -0.05
MINDY4-203ENST00000494187 UBTFP17480 764 aaKnown RBP14.7□□□□□ -0.06
MINDY4-203ENST00000494187 CECR2Q9BXF3 1484 aa14.55□□□□□ -0.08
MINDY4-203ENST00000494187 MYT1Q01538 1121 aa14.53□□□□□ -0.08
MINDY4-203ENST00000494187 RSF1Q96T23 1441 aaPredicted RBP14.53□□□□□ -0.08
MINDY4-203ENST00000494187 HRCP23327 699 aa14.48□□□□□ -0.09
MINDY4-203ENST00000494187 ATP1B4Q9UN42 357 aaPredicted RBP14.46□□□□□ -0.09
MINDY4-203ENST00000494187 TRIM26Q12899 539 aaPredicted RBP14.46□□□□□ -0.09
MINDY4-203ENST00000494187 CCER1Q8TC90 406 aaPredicted RBP14.42□□□□□ -0.1
MINDY4-203ENST00000494187 APLP2Q06481 763 aa14.41□□□□□ -0.1
MINDY4-203ENST00000494187 RB1CC1Q8TDY2 1594 aa14.4□□□□□ -0.1
MINDY4-203ENST00000494187 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.4□□□□□ -0.1
MINDY4-203ENST00000494187 HNRNPUL2Q1KMD3 747 aaKnown RBP14.33□□□□□ -0.11
MINDY4-203ENST00000494187 ITGAEP38570 1179 aa14.31□□□□□ -0.12
MINDY4-203ENST00000494187 NACADO15069 1562 aa14.29□□□□□ -0.12
MINDY4-203ENST00000494187 MROH2BQ7Z745 1585 aa14.29□□□□□ -0.12
MINDY4-203ENST00000494187 DCAF1Q9Y4B6 1507 aa14.27□□□□□ -0.12
MINDY4-203ENST00000494187 CSRNP3Q8WYN3 585 aa14.17□□□□□ -0.14
MINDY4-203ENST00000494187 WIZO95785 1651 aa14.15□□□□□ -0.14
MINDY4-203ENST00000494187 P3H3Q8IVL6 736 aa14.14□□□□□ -0.15
MINDY4-203ENST00000494187 YTHDC1Q96MU7 727 aaKnown RBP14.07□□□□□ -0.16
MINDY4-203ENST00000494187 ABCC8Q09428 1581 aa14.07□□□□□ -0.16
MINDY4-203ENST00000494187 ARID3CA6NKF2 412 aa14.03□□□□□ -0.16
MINDY4-203ENST00000494187 SOGA1O94964 1423 aa14.03□□□□□ -0.16
MINDY4-203ENST00000494187 DNAJC5BQ9UF47 199 aa14.01□□□□□ -0.17
MINDY4-203ENST00000494187 ZEB1P37275 1124 aaPredicted RBP13.99□□□□□ -0.17
MINDY4-203ENST00000494187 CCDC88BA6NC98 1476 aa13.99□□□□□ -0.17
MINDY4-203ENST00000494187 BAZ1AQ9NRL2 1556 aaPredicted RBP13.96□□□□□ -0.18
MINDY4-203ENST00000494187 RUSC2Q8N2Y8 1516 aa13.91□□□□□ -0.18
MINDY4-203ENST00000494187 BAZ1BQ9UIG0 1483 aaKnown RBP13.88□□□□□ -0.19
MINDY4-203ENST00000494187 FAM50AQ14320 339 aaKnown RBP13.87□□□□□ -0.19
MINDY4-203ENST00000494187 UNC13AQ9UPW8 1703 aa13.87□□□□□ -0.19
MINDY4-203ENST00000494187 WRNQ14191 1432 aaPredicted RBP eCLIP13.87□□□□□ -0.19
MINDY4-203ENST00000494187 FBLN2P98095 1184 aa13.84□□□□□ -0.19
MINDY4-203ENST00000494187 CEP162Q5TB80 1403 aa13.83□□□□□ -0.2
MINDY4-203ENST00000494187 BICRAQ9NZM4 1560 aa13.81□□□□□ -0.2
MINDY4-203ENST00000494187 CNGB1Q14028 1251 aaPredicted RBP13.8□□□□□ -0.2
MINDY4-203ENST00000494187 NEUROD1Q13562 356 aa13.78□□□□□ -0.2
MINDY4-203ENST00000494187 DIEXFQ68CQ4 756 aaKnown RBP13.77□□□□□ -0.21
MINDY4-203ENST00000494187 SMARCA4P51532 1647 aa13.76□□□□□ -0.21
MINDY4-203ENST00000494187 CLIP1P30622 1438 aa13.72□□□□□ -0.21
MINDY4-203ENST00000494187 TOP2AP11388 1531 aaKnown RBP13.7□□□□□ -0.22
MINDY4-203ENST00000494187 ATAD2BQ9ULI0 1458 aa13.69□□□□□ -0.22
MINDY4-203ENST00000494187 PRKCSHP14314 528 aaPredicted RBP13.68□□□□□ -0.22
MINDY4-203ENST00000494187 SCAF1Q9H7N4 1312 aaKnown RBP13.68□□□□□ -0.22
MINDY4-203ENST00000494187 SMARCA2P51531 1590 aa13.64□□□□□ -0.23
MINDY4-203ENST00000494187 KANK4Q5T7N3 995 aaPredicted RBP13.64□□□□□ -0.23
MINDY4-203ENST00000494187 HIRIP3Q9BW71 556 aaPredicted RBP13.63□□□□□ -0.23
MINDY4-203ENST00000494187 TNIKQ9UKE5 1360 aa13.63□□□□□ -0.23
MINDY4-203ENST00000494187 GOLGA3Q08378 1498 aa13.62□□□□□ -0.23
MINDY4-203ENST00000494187 POLR3GLQ9BT43 218 aa13.6□□□□□ -0.23
MINDY4-203ENST00000494187 CHIC2Q9UKJ5 165 aa13.59□□□□□ -0.23
MINDY4-203ENST00000494187 CC2D2AQ9P2K1 1620 aa13.58□□□□□ -0.24
MINDY4-203ENST00000494187 RAPGEF2Q9Y4G8 1499 aa13.58□□□□□ -0.24
MINDY4-203ENST00000494187 EIF4G1Q04637 1599 aaKnown RBP13.57□□□□□ -0.24
MINDY4-203ENST00000494187 CENPBP07199 599 aaPredicted RBP13.57□□□□□ -0.24
MINDY4-203ENST00000494187 TRIM52Q96A61 297 aa13.56□□□□□ -0.24
MINDY4-203ENST00000494187 ZNF316A6NFI3 1004 aaPredicted RBP13.53□□□□□ -0.24
MINDY4-203ENST00000494187 CUX2O14529 1486 aa13.53□□□□□ -0.24
MINDY4-203ENST00000494187 ZNF777Q9ULD5 760 aaPredicted RBP13.52□□□□□ -0.25
MINDY4-203ENST00000494187 TDRD9Q8NDG6 1382 aaKnown RBP13.52□□□□□ -0.25
MINDY4-203ENST00000494187 CEP164Q9UPV0 1460 aa13.52□□□□□ -0.25
MINDY4-203ENST00000494187 KIF27Q86VH2 1401 aa13.49□□□□□ -0.25
MINDY4-203ENST00000494187 EEA1Q15075 1411 aa13.47□□□□□ -0.25
MINDY4-203ENST00000494187 ZNF326Q5BKZ1 582 aaKnown RBP13.47□□□□□ -0.25
MINDY4-203ENST00000494187 GTF3C3Q9Y5Q9 886 aa13.46□□□□□ -0.25
MINDY4-203ENST00000494187 MIER1Q8N108 512 aa13.45□□□□□ -0.26
MINDY4-203ENST00000494187 MYT1LQ9UL68 1186 aa13.45□□□□□ -0.26
MINDY4-203ENST00000494187 CARMIL1Q5VZK9 1371 aa13.44□□□□□ -0.26
MINDY4-203ENST00000494187 SYNJ1O43426 1573 aa13.44□□□□□ -0.26
MINDY4-203ENST00000494187 SIN3AQ96ST3 1273 aa13.44□□□□□ -0.26
MINDY4-203ENST00000494187 RRP7BPQ9NSQ0 103 aa13.43□□□□□ -0.26
MINDY4-203ENST00000494187 NESP48681 1621 aa13.41□□□□□ -0.26
MINDY4-203ENST00000494187 CADPSQ9ULU8 1353 aa13.4□□□□□ -0.26
MINDY4-203ENST00000494187 DDX10Q13206 875 aaKnown RBP13.37□□□□□ -0.27
MINDY4-203ENST00000494187 RAD54L2Q9Y4B4 1467 aa13.37□□□□□ -0.27
MINDY4-203ENST00000494187 VPS8Q8N3P4 1428 aa13.36□□□□□ -0.27
MINDY4-203ENST00000494187 BCL11AQ9H165 835 aa13.36□□□□□ -0.27
MINDY4-203ENST00000494187 SENP3-EIF4A1A0A087X0R7 540 aa13.36□□□□□ -0.27
MINDY4-203ENST00000494187 CHMP7Q8WUX9 453 aaPredicted RBP13.36□□□□□ -0.27
MINDY4-203ENST00000494187 BCANQ96GW7 911 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms