RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 JPH4Q96JJ6 628 aa30.91■■■□□ 2.54
COL9A3-214ENST00000490398 PRG4Q92954 1404 aaPredicted RBP30.87■■■□□ 2.53
COL9A3-214ENST00000490398 KIAA0586Q9BVV6 1533 aa30.83■■■□□ 2.53
COL9A3-214ENST00000490398 RAPGEF2Q9Y4G8 1499 aa30.74■■■□□ 2.51
COL9A3-214ENST00000490398 PRXQ9BXM0 1461 aa30.63■■■□□ 2.49
COL9A3-214ENST00000490398 TRHP20396 242 aaPredicted RBP30.62■■■□□ 2.49
COL9A3-214ENST00000490398 IQGAP2Q13576 1575 aa30.6■■■□□ 2.49
COL9A3-214ENST00000490398 CHIC1Q5VXU3 224 aa30.6■■■□□ 2.49
COL9A3-214ENST00000490398 CSRNP3Q8WYN3 585 aa30.54■■■□□ 2.48
COL9A3-214ENST00000490398 FAM9AQ8IZU1 332 aaPredicted RBP30.5■■■□□ 2.47
COL9A3-214ENST00000490398 DISP1Q96F81 1524 aa30.5■■■□□ 2.47
COL9A3-214ENST00000490398 TTBK1Q5TCY1 1321 aaPredicted RBP30.49■■■□□ 2.47
COL9A3-214ENST00000490398 UGGT2Q9NYU1 1516 aa30.46■■■□□ 2.47
COL9A3-214ENST00000490398 CARMIL2Q6F5E8 1435 aa30.46■■■□□ 2.47
COL9A3-214ENST00000490398 PTPRGP23470 1445 aa30.45■■■□□ 2.46
COL9A3-214ENST00000490398 TNIKQ9UKE5 1360 aa30.43■■■□□ 2.46
COL9A3-214ENST00000490398 ADCY10Q96PN6 1610 aa30.43■■■□□ 2.46
COL9A3-214ENST00000490398 EEA1Q15075 1411 aa30.41■■■□□ 2.46
COL9A3-214ENST00000490398 CTTNBP2Q8WZ74 1663 aa30.39■■■□□ 2.46
COL9A3-214ENST00000490398 KIAA0556O60303 1618 aa30.35■■■□□ 2.45
COL9A3-214ENST00000490398 NPM1P06748 294 aaKnown RBP eCLIP30.28■■■□□ 2.44
COL9A3-214ENST00000490398 UACAQ9BZF9 1416 aa30.23■■■□□ 2.43
COL9A3-214ENST00000490398 MAPKBP1O60336 1514 aa30.22■■■□□ 2.43
COL9A3-214ENST00000490398 UHRF1BP1LA0JNW5 1464 aa30.19■■■□□ 2.42
COL9A3-214ENST00000490398 GOLGA3Q08378 1498 aa30.19■■■□□ 2.42
COL9A3-214ENST00000490398 ABCC2Q92887 1545 aa30.19■■■□□ 2.42
COL9A3-214ENST00000490398 P3H3Q8IVL6 736 aa30.18■■■□□ 2.42
COL9A3-214ENST00000490398 EHMT2Q96KQ7 1210 aa30.18■■■□□ 2.42
COL9A3-214ENST00000490398 KIF21BO75037 1637 aa30.17■■■□□ 2.42
COL9A3-214ENST00000490398 KIF13AQ9H1H9 1805 aa30.15■■■□□ 2.42
COL9A3-214ENST00000490398 ABCC10Q5T3U5 1492 aa30.14■■■□□ 2.42
COL9A3-214ENST00000490398 PLB1Q6P1J6 1458 aa30.14■■■□□ 2.42
COL9A3-214ENST00000490398 FAM69CQ0P6D2 419 aa30.13■■■□□ 2.41
COL9A3-214ENST00000490398 RANGAP1P46060 587 aaPredicted RBP30.12■■■□□ 2.41
COL9A3-214ENST00000490398 DIP2BQ9P265 1576 aa30.09■■■□□ 2.41
COL9A3-214ENST00000490398 SAMD9Q5K651 1589 aa30.07■■■□□ 2.4
COL9A3-214ENST00000490398 KDM5BQ9UGL1 1544 aa30.06■■■□□ 2.4
COL9A3-214ENST00000490398 ASXL2Q76L83 1435 aa30.05■■■□□ 2.4
COL9A3-214ENST00000490398 ABCA8O94911 1581 aa30.05■■■□□ 2.4
COL9A3-214ENST00000490398 ZCCHC11Q5TAX3 1644 aaKnown RBP30■■■□□ 2.39
COL9A3-214ENST00000490398 UBTFP17480 764 aaKnown RBP29.97■■■□□ 2.39
COL9A3-214ENST00000490398 FHOD3Q2V2M9 1422 aa29.96■■■□□ 2.39
COL9A3-214ENST00000490398 ARID3CA6NKF2 412 aa29.93■■■□□ 2.38
COL9A3-214ENST00000490398 EPRSP07814 1512 aaKnown RBP29.87■■■□□ 2.37
COL9A3-214ENST00000490398 GLI2P10070 1586 aa29.85■■■□□ 2.37
COL9A3-214ENST00000490398 EFCAB5A4FU69 1503 aa29.83■■■□□ 2.37
COL9A3-214ENST00000490398 ATP10BO94823 1461 aa29.83■■■□□ 2.37
COL9A3-214ENST00000490398 WDR7Q9Y4E6 1490 aa29.83■■■□□ 2.37
COL9A3-214ENST00000490398 TSPOAP1O95153 1857 aa29.82■■■□□ 2.36
COL9A3-214ENST00000490398 RAPGEF6Q8TEU7 1601 aa29.8■■■□□ 2.36
COL9A3-214ENST00000490398 ARHGAP35Q9NRY4 1499 aa29.78■■■□□ 2.36
COL9A3-214ENST00000490398 NUP153P49790 1475 aaKnown RBP29.76■■■□□ 2.35
COL9A3-214ENST00000490398 KCNH8Q96L42 1107 aa29.76■■■□□ 2.35
COL9A3-214ENST00000490398 PPRC1Q5VV67 1664 aaKnown RBP29.75■■■□□ 2.35
COL9A3-214ENST00000490398 MAP3K4Q9Y6R4 1608 aa29.71■■■□□ 2.35
COL9A3-214ENST00000490398 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.65■■■□□ 2.34
COL9A3-214ENST00000490398 HNRNPUL2Q1KMD3 747 aaKnown RBP29.65■■■□□ 2.34
COL9A3-214ENST00000490398 KDM6BO15054 1643 aa29.63■■■□□ 2.33
COL9A3-214ENST00000490398 CD109Q6YHK3 1445 aa29.59■■■□□ 2.33
COL9A3-214ENST00000490398 COL17A1Q9UMD9 1497 aaPredicted RBP29.59■■■□□ 2.33
COL9A3-214ENST00000490398 FMN1Q68DA7 1419 aa29.56■■■□□ 2.32
COL9A3-214ENST00000490398 CDK13Q14004 1512 aaKnown RBP29.55■■■□□ 2.32
COL9A3-214ENST00000490398 CFAP43Q8NDM7 1665 aa29.54■■■□□ 2.32
COL9A3-214ENST00000490398 ATP1B4Q9UN42 357 aaPredicted RBP29.54■■■□□ 2.32
COL9A3-214ENST00000490398 MAGI3Q5TCQ9 1506 aa29.53■■■□□ 2.32
COL9A3-214ENST00000490398 TEX14Q8IWB6 1497 aa29.52■■■□□ 2.32
COL9A3-214ENST00000490398 CLIP1P30622 1438 aa29.48■■■□□ 2.31
COL9A3-214ENST00000490398 PLEKHD1A6NEE1 506 aa29.48■■■□□ 2.31
COL9A3-214ENST00000490398 ABCA9Q8IUA7 1624 aa29.48■■■□□ 2.31
COL9A3-214ENST00000490398 HECW1Q76N89 1606 aa29.45■■■□□ 2.31
COL9A3-214ENST00000490398 LOC105371045A0A1W2PR82 267 aa29.42■■■□□ 2.3
COL9A3-214ENST00000490398 PCF11O94913 1555 aaKnown RBP29.39■■■□□ 2.3
COL9A3-214ENST00000490398 LRRIQ1Q96JM4 1722 aa29.38■■■□□ 2.29
COL9A3-214ENST00000490398 CASKIN1Q8WXD9 1431 aa29.37■■■□□ 2.29
COL9A3-214ENST00000490398 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.36■■■□□ 2.29
COL9A3-214ENST00000490398 TTC37Q6PGP7 1564 aa29.33■■■□□ 2.29
COL9A3-214ENST00000490398 CEP162Q5TB80 1403 aa29.31■■■□□ 2.28
COL9A3-214ENST00000490398 ARAP3Q8WWN8 1544 aa29.27■■■□□ 2.28
COL9A3-214ENST00000490398 CDK11AQ9UQ88 783 aaPredicted RBP29.25■■■□□ 2.27
COL9A3-214ENST00000490398 TROQ12816 1431 aaPredicted RBP29.25■■■□□ 2.27
COL9A3-214ENST00000490398 NEO1Q92859 1461 aa29.24■■■□□ 2.27
COL9A3-214ENST00000490398 FYCO1Q9BQS8 1478 aa29.24■■■□□ 2.27
COL9A3-214ENST00000490398 KIF14Q15058 1648 aa29.24■■■□□ 2.27
COL9A3-214ENST00000490398 RAPGEF3O95398 923 aa29.22■■■□□ 2.27
COL9A3-214ENST00000490398 KDM4FA0A1W2PPD8 638 aa29.21■■■□□ 2.27
COL9A3-214ENST00000490398 PHLDB1Q86UU1 1377 aa29.2■■■□□ 2.26
COL9A3-214ENST00000490398 CCDC18Q5T9S5 1454 aa29.2■■■□□ 2.26
COL9A3-214ENST00000490398 FANCAO15360 1455 aa29.18■■■□□ 2.26
COL9A3-214ENST00000490398 AEBP2Q6ZN18 517 aaPredicted RBP29.17■■■□□ 2.26
COL9A3-214ENST00000490398 PLCH2O75038 1416 aa29.17■■■□□ 2.26
COL9A3-214ENST00000490398 AKNAQ7Z591 1439 aa29.17■■■□□ 2.26
COL9A3-214ENST00000490398 FRMPD1Q5SYB0 1578 aa29.13■■■□□ 2.25
COL9A3-214ENST00000490398 DENND4BO75064 1496 aaPredicted RBP29.07■■■□□ 2.24
COL9A3-214ENST00000490398 MYO5CQ9NQX4 1742 aa29.06■■■□□ 2.24
COL9A3-214ENST00000490398 CFAP74Q9C0B2 1584 aa29.05■■■□□ 2.24
COL9A3-214ENST00000490398 ADGRL1O94910 1474 aa29.04■■■□□ 2.24
COL9A3-214ENST00000490398 EFCAB2Q5VUJ9 269 aa29.03■■■□□ 2.24
COL9A3-214ENST00000490398 SCAPERQ9BY12 1400 aa29.03■■■□□ 2.24
COL9A3-214ENST00000490398 RICTORQ6R327 1708 aa29.02■■■□□ 2.24
COL9A3-214ENST00000490398 ARHGAP5Q13017 1502 aa28.99■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms